Wall clock time and date at job start Mon Mar 30 2020 04:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47446 * 2 1 4 4 C 1.53005 * 109.47130 * 300.00094 * 3 2 1 5 5 N 1.46903 * 109.47490 * 59.99902 * 3 2 1 6 6 C 1.50694 * 109.47328 * 180.02562 * 3 2 1 7 7 O 1.21287 * 120.00257 * 24.99782 * 6 3 2 8 8 N 1.34779 * 120.00050 * 204.99423 * 6 3 2 9 9 C 1.39937 * 119.99894 * 174.88012 * 8 6 3 10 10 C 1.39291 * 119.95219 * 325.55888 * 9 8 6 11 11 C 1.38485 * 120.43163 * 179.75690 * 10 9 8 12 12 C 1.37683 * 120.31763 * 0.51976 * 11 10 9 13 13 C 1.40734 * 119.89090 * 359.74199 * 12 11 10 14 14 C 1.41406 * 120.21770 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99215 * 25.12699 * 14 13 12 16 16 C 1.39924 * 120.00526 * 205.12039 * 14 13 12 17 17 N 1.30829 * 119.99875 * 16.80227 * 16 14 13 18 18 Si 1.86798 * 120.00265 * 196.79821 * 16 14 13 19 19 H 1.48503 * 109.47099 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47207 * 120.00217 * 18 16 14 21 21 H 1.48502 * 109.47394 * 240.00397 * 18 16 14 22 22 C 1.38246 * 119.94530 * 145.83194 * 9 8 6 23 23 H 1.09001 * 109.47040 * 59.99879 * 1 2 3 24 24 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47005 * 299.99945 * 1 2 3 26 26 H 1.09001 * 109.47040 * 120.00121 * 2 1 3 27 27 H 1.08999 * 109.47302 * 239.99443 * 2 1 3 28 28 H 1.08999 * 109.46996 * 59.99908 * 4 3 2 29 29 H 1.08997 * 109.47597 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.46675 * 300.00063 * 4 3 2 31 31 H 1.00895 * 110.99715 * 59.99855 * 5 3 2 32 32 H 1.00893 * 111.00403 * 183.95837 * 5 3 2 33 33 H 0.97005 * 120.00166 * 354.89282 * 8 6 3 34 34 H 1.08006 * 119.78057 * 0.02562 * 10 9 8 35 35 H 1.07993 * 119.84108 * 180.23668 * 11 10 9 36 36 H 1.08006 * 120.05607 * 179.76377 * 12 11 10 37 37 H 0.96998 * 120.00147 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.15767 * 359.96438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 -1.2493 5 7 1.5504 2.1350 1.1994 6 6 3.5470 1.4424 -0.0006 7 8 4.1533 0.4905 -0.4449 8 7 4.2211 2.5002 0.4924 9 6 5.6164 2.4566 0.5909 10 6 6.2553 1.2553 0.8888 11 6 7.6358 1.1998 0.9836 12 6 8.3917 2.3350 0.7948 13 6 7.7597 3.5571 0.4985 14 6 8.5293 4.7271 0.3027 15 1 9.5564 4.6497 -0.0221 16 6 7.9602 5.9851 0.5295 17 7 6.8555 6.0879 1.2228 18 14 8.7776 7.5178 -0.1576 19 1 10.0053 7.1336 -0.8996 20 1 7.8394 8.2089 -1.0780 21 1 9.1379 8.4292 0.9581 22 6 6.3581 3.6072 0.3978 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 0.4401 2.1638 -1.2492 29 1 1.8930 3.1915 -1.2491 30 1 1.8934 1.6498 -2.1393 31 1 1.8739 1.6775 2.0385 32 1 1.8198 3.1073 1.1909 33 1 3.7392 3.2917 0.7792 34 1 5.6705 0.3604 1.0425 35 1 8.1215 0.2625 1.2113 36 1 9.4678 2.2877 0.8735 37 1 6.4611 6.9600 1.3804 38 1 5.8633 4.5400 0.1705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313431469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:51 Heat of formation + Delta-G solvation = -27.356557 kcal Electronic energy + Delta-G solvation = -19688.667479 eV Core-core repulsion = 16723.119150 eV Total energy + Delta-G solvation = -2965.548330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22345 -37.62718 -36.14509 -34.40358 -33.34766 -31.22024 -29.59494 -28.86935 -28.25167 -25.31687 -24.99671 -22.33769 -21.25353 -20.13575 -19.01282 -17.51394 -17.31187 -16.04539 -15.70191 -15.22246 -14.79981 -14.70271 -14.42014 -14.20053 -13.33690 -13.03036 -12.94707 -12.48382 -12.40884 -12.17358 -11.92291 -11.67786 -11.61991 -11.30003 -11.16059 -11.00571 -10.82887 -10.73220 -10.60734 -10.23473 -9.83544 -9.75034 -9.34937 -9.09114 -8.51577 -7.42931 -7.06943 -6.74428 -4.41683 2.50720 2.79806 3.04521 3.09966 3.14351 3.27754 3.54380 3.90047 4.38783 4.59022 4.73090 4.82163 5.03051 5.39705 5.52390 5.57541 5.62774 5.70970 5.90220 5.94497 6.04750 6.22046 6.24014 6.38058 6.57575 6.62900 6.76484 6.90114 7.00776 7.02885 7.20781 7.22475 7.56780 7.63472 7.87727 7.98278 8.09887 8.27120 8.50379 8.68937 8.84469 8.90949 10.14448 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.005095 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.342296 B = 5494.033103 C = 6211.714754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C 0.106 3.894 4 C -0.139 4.139 5 N -0.828 5.828 6 C 0.475 3.525 7 O -0.522 6.522 8 N -0.665 5.665 9 C 0.143 3.857 10 C -0.227 4.227 11 C -0.086 4.086 12 C -0.228 4.228 13 C 0.120 3.880 14 C -0.463 4.463 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.800 5.800 18 Si 0.907 3.093 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.182 4.182 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.347 0.653 32 H 0.342 0.658 33 H 0.397 0.603 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.278 0.722 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -3.036 -0.770 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C 0.010 3.990 4 C -0.197 4.197 5 N -0.361 5.361 6 C 0.259 3.741 7 O -0.396 6.396 8 N -0.310 5.310 9 C 0.052 3.948 10 C -0.248 4.248 11 C -0.104 4.104 12 C -0.247 4.247 13 C 0.117 3.883 14 C -0.493 4.493 15 H 0.097 0.903 16 C -0.140 4.140 17 N -0.426 5.426 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.204 4.204 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.232 0.768 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.367 -3.753 -1.261 12.037 hybrid contribution 1.213 1.417 0.186 1.874 sum -10.154 -2.336 -1.075 10.475 Atomic orbital electron populations 1.21723 0.94762 1.00877 1.02662 1.21332 0.96346 0.92719 1.03108 1.21122 0.87974 0.97086 0.92865 1.21853 1.02447 0.99998 0.95395 1.58941 1.66622 1.06682 1.03819 1.21851 0.91219 0.83031 0.77966 1.90690 1.70192 1.34447 1.44306 1.43569 1.06848 1.17851 1.62701 1.17623 0.80281 0.95536 1.01377 1.20265 0.94207 0.96178 1.14187 1.20419 0.93290 0.96747 0.99992 1.21047 0.97935 0.93867 1.11896 1.17371 0.91277 0.92073 0.87541 1.19580 0.99176 0.89919 1.40592 0.90285 1.25875 0.94552 1.00991 0.92586 1.69817 1.18041 1.26357 1.28359 0.86277 0.80363 0.80637 0.79548 1.18390 1.19770 1.19992 1.21076 0.94358 0.96115 1.08810 0.92717 0.93330 0.91469 0.91935 0.90588 0.90331 0.92252 0.91443 0.83954 0.84371 0.76819 0.88298 0.89010 0.88805 0.91082 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.40 37.16 0.35 -1.08 16 2 C -0.10 -1.20 4.68 -26.73 -0.13 -1.32 16 3 C 0.11 1.37 0.85 -132.75 -0.11 1.25 16 4 C -0.14 -1.62 8.36 37.16 0.31 -1.31 16 5 N -0.83 -8.94 7.95 -0.19 0.00 -8.94 16 6 C 0.48 8.43 6.40 -10.99 -0.07 8.35 16 7 O -0.52 -11.32 13.84 5.55 0.08 -11.25 16 8 N -0.67 -12.38 5.19 -9.91 -0.05 -12.43 16 9 C 0.14 3.36 6.25 -83.76 -0.52 2.84 16 10 C -0.23 -5.46 8.66 -39.10 -0.34 -5.80 16 11 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 12 C -0.23 -5.69 9.79 -38.84 -0.38 -6.07 16 13 C 0.12 3.20 5.57 -106.85 -0.59 2.61 16 14 C -0.46 -12.17 9.05 -37.75 -0.34 -12.51 16 15 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 16 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 17 N -0.80 -19.90 10.94 55.55 0.61 -19.29 16 18 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.18 -4.63 8.60 -38.68 -0.33 -4.97 16 23 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.67 7.60 -51.93 -0.39 0.28 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 28 H 0.08 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.35 3.73 8.99 -39.29 -0.35 3.38 16 32 H 0.34 3.43 7.62 -39.30 -0.30 3.13 16 33 H 0.40 6.27 7.39 -40.82 -0.30 5.96 16 34 H 0.10 2.35 6.48 -52.48 -0.34 2.01 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 36 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 37 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 38 H 0.12 3.13 6.17 -52.48 -0.32 2.80 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -29.27 311.46 -7.53 -36.79 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -5.17 Total: 15.71 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -2.65 Total: -18.62 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.55 Total: -40.66 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.27 -7.53 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.437 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds