Wall clock time and date at job start Mon Mar 30 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47446 * 2 1 4 4 C 1.53005 * 109.47130 * 300.00094 * 3 2 1 5 5 N 1.46903 * 109.47490 * 59.99902 * 3 2 1 6 6 C 1.50694 * 109.47328 * 180.02562 * 3 2 1 7 7 O 1.21287 * 120.00257 * 24.99782 * 6 3 2 8 8 N 1.34779 * 120.00050 * 204.99423 * 6 3 2 9 9 C 1.39937 * 119.99894 * 174.88012 * 8 6 3 10 10 C 1.39291 * 119.95219 * 325.55888 * 9 8 6 11 11 C 1.38485 * 120.43163 * 179.75690 * 10 9 8 12 12 C 1.37683 * 120.31763 * 0.51976 * 11 10 9 13 13 C 1.40734 * 119.89090 * 359.74199 * 12 11 10 14 14 C 1.41406 * 120.21770 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99215 * 25.12699 * 14 13 12 16 16 C 1.39924 * 120.00526 * 205.12039 * 14 13 12 17 17 N 1.30829 * 119.99875 * 16.80227 * 16 14 13 18 18 Si 1.86798 * 120.00265 * 196.79821 * 16 14 13 19 19 H 1.48503 * 109.47099 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47207 * 120.00217 * 18 16 14 21 21 H 1.48502 * 109.47394 * 240.00397 * 18 16 14 22 22 C 1.38246 * 119.94530 * 145.83194 * 9 8 6 23 23 H 1.09001 * 109.47040 * 59.99879 * 1 2 3 24 24 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47005 * 299.99945 * 1 2 3 26 26 H 1.09001 * 109.47040 * 120.00121 * 2 1 3 27 27 H 1.08999 * 109.47302 * 239.99443 * 2 1 3 28 28 H 1.08999 * 109.46996 * 59.99908 * 4 3 2 29 29 H 1.08997 * 109.47597 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.46675 * 300.00063 * 4 3 2 31 31 H 1.00895 * 110.99715 * 59.99855 * 5 3 2 32 32 H 1.00893 * 111.00403 * 183.95837 * 5 3 2 33 33 H 0.97005 * 120.00166 * 354.89282 * 8 6 3 34 34 H 1.08006 * 119.78057 * 0.02562 * 10 9 8 35 35 H 1.07993 * 119.84108 * 180.23668 * 11 10 9 36 36 H 1.08006 * 120.05607 * 179.76377 * 12 11 10 37 37 H 0.96998 * 120.00147 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.15767 * 359.96438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 -1.2493 5 7 1.5504 2.1350 1.1994 6 6 3.5470 1.4424 -0.0006 7 8 4.1533 0.4905 -0.4449 8 7 4.2211 2.5002 0.4924 9 6 5.6164 2.4566 0.5909 10 6 6.2553 1.2553 0.8888 11 6 7.6358 1.1998 0.9836 12 6 8.3917 2.3350 0.7948 13 6 7.7597 3.5571 0.4985 14 6 8.5293 4.7271 0.3027 15 1 9.5564 4.6497 -0.0221 16 6 7.9602 5.9851 0.5295 17 7 6.8555 6.0879 1.2228 18 14 8.7776 7.5178 -0.1576 19 1 10.0053 7.1336 -0.8996 20 1 7.8394 8.2089 -1.0780 21 1 9.1379 8.4292 0.9581 22 6 6.3581 3.6072 0.3978 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 0.4401 2.1638 -1.2492 29 1 1.8930 3.1915 -1.2491 30 1 1.8934 1.6498 -2.1393 31 1 1.8739 1.6775 2.0385 32 1 1.8198 3.1073 1.1909 33 1 3.7392 3.2917 0.7792 34 1 5.6705 0.3604 1.0425 35 1 8.1215 0.2625 1.2113 36 1 9.4678 2.2877 0.8735 37 1 6.4611 6.9600 1.3804 38 1 5.8633 4.5400 0.1705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313431469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:50 Heat of formation + Delta-G solvation = -46.383263 kcal Electronic energy + Delta-G solvation = -19689.492539 eV Core-core repulsion = 16723.119150 eV Total energy + Delta-G solvation = -2966.373390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67661 -39.33544 -37.43874 -36.11148 -35.14700 -32.22633 -31.50233 -30.19929 -29.61660 -27.22809 -26.07938 -23.75635 -23.12263 -21.75429 -20.32542 -19.29869 -18.69630 -17.56178 -16.96221 -16.83025 -16.52306 -16.00343 -15.79881 -15.70403 -14.89398 -14.64732 -14.25137 -14.09927 -13.69346 -13.44700 -13.17195 -13.10593 -12.84978 -12.82695 -12.63291 -12.54735 -12.37300 -12.03938 -11.83938 -11.65632 -11.61611 -11.32589 -11.12119 -10.83472 -9.74006 -9.37669 -8.90821 -8.59028 -6.39196 0.75711 0.99352 1.39490 1.46233 1.53757 1.68016 2.10404 2.20963 2.71830 3.40351 3.54805 3.68129 3.76626 3.94924 4.40720 4.48863 4.61646 4.65747 4.67521 4.78531 4.81961 4.96394 5.04394 5.06623 5.10255 5.14861 5.19544 5.31693 5.35055 5.55340 5.72149 5.77913 5.88940 5.98593 6.04324 6.28919 6.33416 6.51713 6.67989 6.90327 6.93381 7.18166 8.31420 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.005095 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.342296 B = 5494.033103 C = 6211.714754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C 0.120 3.880 4 C -0.138 4.138 5 N -0.814 5.814 6 C 0.472 3.528 7 O -0.563 6.563 8 N -0.660 5.660 9 C 0.149 3.851 10 C -0.242 4.242 11 C -0.084 4.084 12 C -0.249 4.249 13 C 0.093 3.907 14 C -0.498 4.498 15 H 0.076 0.924 16 C 0.040 3.960 17 N -0.820 5.820 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.263 1.263 21 H -0.264 1.264 22 C -0.203 4.203 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.350 0.650 32 H 0.349 0.651 33 H 0.411 0.589 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.290 0.710 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.354 -2.118 -0.848 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C 0.023 3.977 4 C -0.196 4.196 5 N -0.347 5.347 6 C 0.259 3.741 7 O -0.440 6.440 8 N -0.305 5.305 9 C 0.056 3.944 10 C -0.263 4.263 11 C -0.103 4.103 12 C -0.269 4.269 13 C 0.090 3.910 14 C -0.527 4.527 15 H 0.094 0.906 16 C -0.176 4.176 17 N -0.446 5.446 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.189 1.189 22 C -0.225 4.225 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.248 0.752 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.877 -2.830 -1.318 13.250 hybrid contribution 1.631 1.077 0.251 1.971 sum -11.246 -1.752 -1.066 11.431 Atomic orbital electron populations 1.21671 0.92400 1.01852 1.03234 1.21347 0.98233 0.91888 1.02047 1.21113 0.83940 0.98166 0.94476 1.21889 1.03905 0.99688 0.94095 1.58961 1.65616 1.06979 1.03116 1.22969 0.93266 0.81641 0.76219 1.90665 1.71522 1.35850 1.45919 1.43550 1.05154 1.19021 1.62771 1.17697 0.82497 0.94696 0.99530 1.20433 0.94599 0.96427 1.14873 1.20728 0.93345 0.97494 0.98732 1.21220 0.98559 0.94064 1.13029 1.17775 0.92220 0.92981 0.88021 1.19827 0.99453 0.91144 1.42317 0.90621 1.26687 0.95136 1.03544 0.92209 1.69839 1.18792 1.27873 1.28111 0.85171 0.79225 0.76434 0.78966 1.18544 1.18770 1.18902 1.21031 0.94304 0.96488 1.10635 0.91732 0.92281 0.91167 0.92843 0.91984 0.87900 0.92019 0.92233 0.83652 0.83584 0.75183 0.88231 0.86323 0.88033 0.89967 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.40 71.98 0.68 -1.65 16 2 C -0.10 -2.27 4.68 30.59 0.14 -2.12 16 3 C 0.12 2.91 0.85 2.78 0.00 2.91 16 4 C -0.14 -2.92 8.36 71.98 0.60 -2.32 16 5 N -0.81 -15.80 7.95 -154.52 -1.23 -17.03 16 6 C 0.47 16.57 6.40 87.65 0.56 17.13 16 7 O -0.56 -24.62 13.84 -3.05 -0.04 -24.66 16 8 N -0.66 -24.39 5.19 -303.65 -1.58 -25.97 16 9 C 0.15 7.06 6.25 38.10 0.24 7.30 16 10 C -0.24 -11.74 8.66 22.58 0.20 -11.55 16 11 C -0.08 -4.01 10.02 22.20 0.22 -3.79 16 12 C -0.25 -12.70 9.79 22.75 0.22 -12.47 16 13 C 0.09 5.08 5.57 -21.31 -0.12 4.96 16 14 C -0.50 -26.73 9.05 23.46 0.21 -26.52 16 15 H 0.08 3.95 7.90 -2.91 -0.02 3.93 16 16 C 0.04 1.94 5.16 85.25 0.44 2.38 16 17 N -0.82 -40.75 10.94 21.82 0.24 -40.52 16 18 Si 0.98 37.17 29.59 68.60 2.03 39.20 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 C -0.20 -10.55 8.60 22.85 0.20 -10.35 16 23 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.20 7.60 -2.38 -0.02 1.18 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.63 7.87 -2.39 -0.02 1.61 16 28 H 0.10 1.70 6.43 -2.39 -0.02 1.69 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.35 6.84 8.99 -89.70 -0.81 6.03 16 32 H 0.35 6.19 7.62 -89.70 -0.68 5.51 16 33 H 0.41 12.67 7.39 -92.70 -0.68 11.98 16 34 H 0.10 4.77 6.48 -2.91 -0.02 4.76 16 35 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 36 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 38 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 Total: -1.00 -63.65 311.46 1.94 -61.71 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -1.07 Total: 43.35 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.59 Total: -36.09 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.57 Total: -83.51 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -63.65 1.94 -61.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.329 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds