Wall clock time and date at job start Mon Mar 30 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 N 1.46504 * 109.46925 * 120.00084 * 2 1 3 5 5 C 1.34768 * 119.99903 * 155.00460 * 4 2 1 6 6 O 1.21280 * 120.00195 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00094 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.47451 * 179.97438 * 7 5 4 9 9 C 1.39683 * 120.00098 * 179.97438 * 8 7 5 10 10 C 1.39338 * 119.95130 * 359.97438 * 9 8 7 11 11 C 1.38476 * 120.42164 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32780 * 359.97438 * 11 10 9 13 13 C 1.40755 * 119.89513 * 0.04526 * 12 11 10 14 14 C 1.41405 * 120.20845 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00205 * 24.35712 * 14 13 12 16 16 C 1.39933 * 119.99735 * 204.35760 * 14 13 12 17 17 N 1.30828 * 119.99831 * 17.84092 * 16 14 13 18 18 Si 1.86796 * 119.99788 * 197.83818 * 16 14 13 19 19 H 1.48501 * 109.47082 * 94.69103 * 18 16 14 20 20 H 1.48503 * 109.47332 * 214.69030 * 18 16 14 21 21 H 1.48501 * 109.47492 * 334.69201 * 18 16 14 22 22 C 1.38280 * 119.95111 * 180.02562 * 9 8 7 23 23 H 1.08994 * 109.47102 * 299.99772 * 1 2 3 24 24 H 1.08997 * 109.47237 * 60.00498 * 1 2 3 25 25 H 1.09002 * 109.46761 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47143 * 239.99353 * 2 1 3 27 27 H 1.09002 * 109.46952 * 59.99793 * 3 2 1 28 28 H 1.08996 * 109.47157 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46707 * 299.99826 * 3 2 1 30 30 H 0.97004 * 119.99881 * 334.99898 * 4 2 1 31 31 H 1.09007 * 109.46908 * 59.99980 * 7 5 4 32 32 H 1.09005 * 109.47330 * 300.00092 * 7 5 4 33 33 H 0.96998 * 119.99975 * 0.02562 * 8 7 5 34 34 H 1.07995 * 119.78931 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.83527 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.05686 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99342 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.16172 * 359.70339 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 3.2403 -1.2591 1.1945 6 8 3.9355 -1.1993 0.2025 7 6 3.7428 -1.9691 2.4251 8 7 5.0856 -2.4967 2.1705 9 6 5.7618 -3.1982 3.1714 10 6 5.1585 -3.3951 4.4118 11 6 5.8202 -4.0886 5.4112 12 6 7.0823 -4.5920 5.1895 13 6 7.7047 -4.4007 3.9417 14 6 9.0010 -4.9144 3.7069 15 1 9.3611 -5.7549 4.2818 16 6 9.8174 -4.3338 2.7299 17 7 9.5497 -3.1338 2.2826 18 14 11.2892 -5.2720 2.0645 19 1 10.9010 -5.9842 0.8205 20 1 12.3897 -4.3203 1.7671 21 1 11.7469 -6.2575 3.0766 22 6 7.0294 -3.6954 2.9301 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.4622 -0.7387 1.9895 31 1 3.0703 -2.7911 2.6704 32 1 3.7796 -1.2684 3.2593 33 1 5.5054 -2.3583 1.3071 34 1 4.1685 -3.0043 4.5950 35 1 5.3434 -4.2360 6.3691 36 1 7.5945 -5.1319 5.9722 37 1 10.1155 -2.7316 1.6050 38 1 7.4964 -3.5468 1.9677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313431970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:58 Heat of formation + Delta-G solvation = -26.311761 kcal Electronic energy + Delta-G solvation = -18885.674281 eV Core-core repulsion = 15920.171257 eV Total energy + Delta-G solvation = -2965.503024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88817 -37.68738 -36.17470 -34.56224 -33.14936 -31.80580 -29.39531 -28.90612 -27.48658 -25.60111 -25.11697 -21.79761 -21.02988 -20.49676 -19.74838 -17.42864 -17.04550 -16.36918 -15.47156 -15.39470 -14.81244 -14.65805 -14.45234 -14.08847 -13.46541 -13.29195 -12.81821 -12.68852 -12.54813 -12.54362 -12.36383 -12.06376 -11.64606 -11.51836 -11.21306 -11.10833 -10.99081 -10.57516 -10.37134 -9.80906 -9.60135 -9.42168 -9.27485 -9.19908 -8.75805 -7.28107 -6.67978 -6.15298 -4.26780 2.64144 2.90876 3.00276 3.14653 3.18325 3.26438 3.37520 4.02433 4.41634 4.55340 4.76584 4.78103 4.86430 4.98525 5.29387 5.42457 5.50691 5.57592 5.61897 5.66059 5.84957 5.89512 6.03344 6.27757 6.36912 6.56879 6.89073 7.11225 7.18461 7.35392 7.43740 7.48363 7.83817 7.98828 8.13250 8.18385 8.22017 8.52647 8.76286 8.87734 9.05718 9.15552 10.30797 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.004030 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.454740 B = 6946.666111 C = 7784.170544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.730 5.730 5 C 0.510 3.490 6 O -0.533 6.533 7 C 0.120 3.880 8 N -0.750 5.750 9 C 0.216 3.784 10 C -0.304 4.304 11 C -0.065 4.065 12 C -0.257 4.257 13 C 0.139 3.861 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.789 5.789 18 Si 0.905 3.095 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.228 4.228 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.401 0.599 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.402 0.598 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.278 0.722 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.051 6.455 -3.279 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.383 5.383 5 C 0.297 3.703 6 O -0.408 6.408 7 C -0.009 4.009 8 N -0.387 5.387 9 C 0.118 3.882 10 C -0.327 4.327 11 C -0.084 4.084 12 C -0.278 4.278 13 C 0.136 3.864 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.415 5.415 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.252 4.252 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.235 0.765 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.239 0.761 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.610 6.730 -4.079 16.594 hybrid contribution 0.492 -0.168 -0.201 0.557 sum -14.118 6.563 -4.279 16.146 Atomic orbital electron populations 1.22072 0.94172 1.02638 1.02848 1.20922 0.93848 0.93076 0.89052 1.22193 1.02406 0.95757 1.01913 1.46061 1.18019 1.57401 1.16853 1.20944 0.81147 0.78153 0.90096 1.90688 1.55887 1.59217 1.35035 1.20778 0.88042 0.97924 0.94195 1.44171 1.15029 1.63166 1.16365 1.17623 0.91532 0.91639 0.87403 1.19854 1.01035 1.16696 0.95067 1.20262 0.94791 0.97150 0.96214 1.20864 0.97334 1.11987 0.97593 1.17323 0.91782 0.87949 0.89345 1.19570 0.98465 1.14529 1.16860 0.90516 1.25894 0.99037 0.94041 0.95103 1.69869 1.36432 1.12017 1.23153 0.86359 0.80431 0.80277 0.79947 1.19451 1.20424 1.18655 1.20726 0.93005 1.10352 1.01105 0.92039 0.91015 0.91935 0.89483 0.92492 0.91913 0.91750 0.76528 0.90372 0.90351 0.76149 0.89736 0.89606 0.89354 0.91111 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.38 37.16 0.35 -0.65 16 2 C 0.14 1.27 3.18 -67.92 -0.22 1.06 16 3 C -0.16 -1.52 9.48 37.16 0.35 -1.16 16 4 N -0.73 -7.49 5.08 -53.80 -0.27 -7.76 16 5 C 0.51 7.45 7.86 -10.99 -0.09 7.36 16 6 O -0.53 -9.88 15.33 5.56 0.09 -9.80 16 7 C 0.12 1.85 5.39 -5.19 -0.03 1.82 16 8 N -0.75 -15.41 5.70 -59.85 -0.34 -15.76 16 9 C 0.22 5.19 6.64 -83.86 -0.56 4.63 16 10 C -0.30 -6.86 9.32 -39.08 -0.36 -7.22 16 11 C -0.07 -1.51 10.01 -39.70 -0.40 -1.90 16 12 C -0.26 -6.56 9.79 -38.83 -0.38 -6.94 16 13 C 0.14 3.86 5.57 -106.85 -0.60 3.26 16 14 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 16 15 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 16 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 17 N -0.79 -21.26 10.95 55.55 0.61 -20.65 16 18 Si 0.91 19.37 29.59 -169.99 -5.03 14.34 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.23 -6.16 8.53 -38.68 -0.33 -6.49 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.40 2.91 8.60 -40.82 -0.35 2.56 16 31 H 0.08 1.09 7.94 -51.92 -0.41 0.68 16 32 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.40 8.68 7.44 -40.82 -0.30 8.38 16 34 H 0.08 1.65 6.70 -52.49 -0.35 1.29 16 35 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 37 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 38 H 0.12 3.32 6.16 -52.49 -0.32 3.00 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -31.19 320.88 -8.28 -39.47 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.48 Total: 12.73 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.68 Total: -17.42 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.01 Total: -44.16 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.19 -8.28 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.160 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds