Wall clock time and date at job start Mon Mar 30 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 N 1.46504 * 109.46925 * 120.00084 * 2 1 3 5 5 C 1.34768 * 119.99903 * 155.00460 * 4 2 1 6 6 O 1.21280 * 120.00195 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00094 * 179.97438 * 5 4 2 8 8 N 1.46502 * 109.47451 * 179.97438 * 7 5 4 9 9 C 1.39683 * 120.00098 * 179.97438 * 8 7 5 10 10 C 1.39338 * 119.95130 * 359.97438 * 9 8 7 11 11 C 1.38476 * 120.42164 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32780 * 359.97438 * 11 10 9 13 13 C 1.40755 * 119.89513 * 0.04526 * 12 11 10 14 14 C 1.41405 * 120.20845 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00205 * 24.35712 * 14 13 12 16 16 C 1.39933 * 119.99735 * 204.35760 * 14 13 12 17 17 N 1.30828 * 119.99831 * 17.84092 * 16 14 13 18 18 Si 1.86796 * 119.99788 * 197.83818 * 16 14 13 19 19 H 1.48501 * 109.47082 * 94.69103 * 18 16 14 20 20 H 1.48503 * 109.47332 * 214.69030 * 18 16 14 21 21 H 1.48501 * 109.47492 * 334.69201 * 18 16 14 22 22 C 1.38280 * 119.95111 * 180.02562 * 9 8 7 23 23 H 1.08994 * 109.47102 * 299.99772 * 1 2 3 24 24 H 1.08997 * 109.47237 * 60.00498 * 1 2 3 25 25 H 1.09002 * 109.46761 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47143 * 239.99353 * 2 1 3 27 27 H 1.09002 * 109.46952 * 59.99793 * 3 2 1 28 28 H 1.08996 * 109.47157 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46707 * 299.99826 * 3 2 1 30 30 H 0.97004 * 119.99881 * 334.99898 * 4 2 1 31 31 H 1.09007 * 109.46908 * 59.99980 * 7 5 4 32 32 H 1.09005 * 109.47330 * 300.00092 * 7 5 4 33 33 H 0.96998 * 119.99975 * 0.02562 * 8 7 5 34 34 H 1.07995 * 119.78931 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.83527 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.05686 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99342 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.16172 * 359.70339 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 3.2403 -1.2591 1.1945 6 8 3.9355 -1.1993 0.2025 7 6 3.7428 -1.9691 2.4251 8 7 5.0856 -2.4967 2.1705 9 6 5.7618 -3.1982 3.1714 10 6 5.1585 -3.3951 4.4118 11 6 5.8202 -4.0886 5.4112 12 6 7.0823 -4.5920 5.1895 13 6 7.7047 -4.4007 3.9417 14 6 9.0010 -4.9144 3.7069 15 1 9.3611 -5.7549 4.2818 16 6 9.8174 -4.3338 2.7299 17 7 9.5497 -3.1338 2.2826 18 14 11.2892 -5.2720 2.0645 19 1 10.9010 -5.9842 0.8205 20 1 12.3897 -4.3203 1.7671 21 1 11.7469 -6.2575 3.0766 22 6 7.0294 -3.6954 2.9301 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.4622 -0.7387 1.9895 31 1 3.0703 -2.7911 2.6704 32 1 3.7796 -1.2684 3.2593 33 1 5.5054 -2.3583 1.3071 34 1 4.1685 -3.0043 4.5950 35 1 5.3434 -4.2360 6.3691 36 1 7.5945 -5.1319 5.9722 37 1 10.1155 -2.7316 1.6050 38 1 7.4964 -3.5468 1.9677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313431970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:58 Heat of formation + Delta-G solvation = -47.211655 kcal Electronic energy + Delta-G solvation = -18886.580568 eV Core-core repulsion = 15920.171257 eV Total energy + Delta-G solvation = -2966.409312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04512 -39.48083 -37.19623 -36.25335 -34.99161 -32.79904 -31.33351 -30.48501 -28.11254 -27.17712 -27.00088 -23.13990 -22.50603 -21.69923 -21.40381 -19.10401 -18.59339 -17.43548 -17.10927 -16.64813 -16.45726 -16.22228 -15.83651 -15.23154 -14.81704 -14.49876 -14.46054 -14.20989 -13.84330 -13.80006 -13.34837 -13.20561 -13.06624 -12.88969 -12.74277 -12.47079 -12.31949 -12.09307 -11.93887 -11.54615 -11.30630 -11.10572 -11.01706 -10.56513 -10.18436 -9.24420 -8.62031 -7.94813 -6.31722 1.08897 1.33330 1.37627 1.50422 1.51602 1.58484 1.98603 2.22626 2.81183 2.89494 3.70124 3.87076 3.96507 4.12371 4.30423 4.34904 4.47040 4.54866 4.71475 4.74205 4.80805 4.92061 4.99367 5.01736 5.19917 5.24811 5.30255 5.31290 5.43636 5.48934 5.58230 5.94010 6.10936 6.21808 6.25494 6.46000 6.58693 6.92159 6.99939 7.06879 7.16271 7.21861 8.38367 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.004030 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.454740 B = 6946.666111 C = 7784.170544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 C -0.161 4.161 4 N -0.707 5.707 5 C 0.511 3.489 6 O -0.581 6.581 7 C 0.115 3.885 8 N -0.753 5.753 9 C 0.218 3.782 10 C -0.298 4.298 11 C -0.060 4.060 12 C -0.284 4.284 13 C 0.108 3.892 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.824 5.824 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.256 1.256 22 C -0.262 4.262 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.419 0.581 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.393 0.607 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.283 0.717 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.475 7.004 -2.532 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 C -0.219 4.219 4 N -0.361 5.361 5 C 0.297 3.703 6 O -0.460 6.460 7 C -0.012 4.012 8 N -0.388 5.388 9 C 0.118 3.882 10 C -0.320 4.320 11 C -0.078 4.078 12 C -0.304 4.304 13 C 0.105 3.895 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.450 5.450 18 Si 0.802 3.198 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.179 1.179 22 C -0.286 4.286 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.257 0.743 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.227 0.773 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.120 7.309 -3.302 18.906 hybrid contribution 1.045 -0.242 -0.409 1.148 sum -16.076 7.067 -3.711 17.948 Atomic orbital electron populations 1.22016 0.91051 1.03299 1.04385 1.21072 0.96136 0.92617 0.87563 1.22163 1.00182 0.95968 1.03583 1.45921 1.16549 1.55651 1.17966 1.20853 0.82045 0.78221 0.89144 1.90682 1.57533 1.61272 1.36542 1.21066 0.85759 0.99168 0.95223 1.44297 1.16808 1.62475 1.15196 1.17761 0.90810 0.90895 0.88767 1.20287 1.02459 1.15479 0.93819 1.20692 0.93728 0.95470 0.97936 1.21055 0.98894 1.13383 0.97090 1.17707 0.92479 0.88760 0.90554 1.19833 0.99413 1.15375 1.18708 0.90789 1.26765 1.01950 0.94618 0.94736 1.69947 1.37885 1.13426 1.23753 0.85224 0.76633 0.78873 0.79115 1.19051 1.19305 1.17945 1.20646 0.94867 1.12766 1.00323 0.90246 0.89747 0.91717 0.92000 0.90906 0.95271 0.90062 0.74333 0.87862 0.88298 0.77253 0.85609 0.85679 0.88999 0.90621 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.38 71.98 0.68 -0.72 16 2 C 0.13 2.22 3.18 44.99 0.14 2.37 16 3 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 4 N -0.71 -12.90 5.08 -442.52 -2.25 -15.15 16 5 C 0.51 14.34 7.86 87.66 0.69 15.03 16 6 O -0.58 -21.95 15.33 -3.03 -0.05 -22.00 16 7 C 0.12 3.29 5.39 85.63 0.46 3.75 16 8 N -0.75 -30.77 5.70 -343.27 -1.96 -32.73 16 9 C 0.22 10.43 6.64 38.17 0.25 10.68 16 10 C -0.30 -12.67 9.32 22.59 0.21 -12.46 16 11 C -0.06 -2.63 10.01 22.19 0.22 -2.40 16 12 C -0.28 -14.57 9.79 22.75 0.22 -14.34 16 13 C 0.11 6.20 5.57 -21.31 -0.12 6.08 16 14 C -0.50 -28.89 9.05 23.46 0.21 -28.68 16 15 H 0.07 4.09 7.91 -2.91 -0.02 4.07 16 16 C 0.03 1.82 5.14 85.25 0.44 2.26 16 17 N -0.82 -46.32 10.95 21.82 0.24 -46.09 16 18 Si 0.98 40.84 29.59 68.60 2.03 42.87 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 C -0.26 -14.70 8.53 22.86 0.19 -14.50 16 23 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 1.40 7.58 -2.39 -0.02 1.38 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.42 4.55 8.60 -92.71 -0.80 3.76 16 31 H 0.10 2.48 7.94 -2.38 -0.02 2.47 16 32 H 0.10 2.47 7.94 -2.38 -0.02 2.45 16 33 H 0.39 17.53 7.44 -92.71 -0.69 16.84 16 34 H 0.13 4.27 6.70 -2.91 -0.02 4.25 16 35 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.28 14.54 8.30 -92.70 -0.77 13.77 16 38 H 0.09 5.52 6.16 -2.91 -0.02 5.51 16 Total: -1.00 -71.73 320.88 1.89 -69.84 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -0.42 Total: 38.23 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 4.29 Total: -34.98 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -3.97 Total: -93.96 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -71.73 1.89 -69.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.628 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds