Wall clock time and date at job start Mon Mar 30 2020 04:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00318 * 2 1 4 4 C 1.53001 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47210 * 55.00121 * 4 3 2 6 6 C 1.53002 * 109.46922 * 294.99841 * 4 3 2 7 7 C 1.50696 * 109.46957 * 175.00403 * 4 3 2 8 8 O 1.21296 * 120.00151 * 359.97438 * 7 4 3 9 9 N 1.34783 * 120.00211 * 180.02562 * 7 4 3 10 10 C 1.39933 * 120.00097 * 174.89452 * 9 7 4 11 11 C 1.39286 * 119.94887 * 325.51865 * 10 9 7 12 12 C 1.38492 * 120.43110 * 179.76480 * 11 10 9 13 13 C 1.37684 * 120.31747 * 0.51242 * 12 11 10 14 14 C 1.40740 * 119.88583 * 359.74795 * 13 12 11 15 15 C 1.41407 * 120.20885 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99810 * 205.16046 * 15 14 13 17 17 C 1.39932 * 120.00254 * 25.16906 * 15 14 13 18 18 N 1.30828 * 119.99981 * 16.80193 * 17 15 14 19 19 Si 1.86799 * 120.00005 * 196.81054 * 17 15 14 20 20 H 1.48498 * 109.47373 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47115 * 119.99719 * 19 17 15 22 22 H 1.48503 * 109.46804 * 239.99247 * 19 17 15 23 23 C 1.38245 * 119.94457 * 145.79920 * 10 9 7 24 24 H 1.08999 * 109.46936 * 59.99215 * 1 2 3 25 25 H 1.08997 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47117 * 299.99997 * 1 2 3 27 27 H 1.00903 * 110.99720 * 123.95665 * 2 1 3 28 28 H 1.08994 * 109.47128 * 300.00327 * 3 2 1 29 29 H 1.09003 * 109.47052 * 60.00111 * 3 2 1 30 30 H 1.09001 * 109.46600 * 180.02562 * 6 4 3 31 31 H 1.08998 * 109.47116 * 300.00002 * 6 4 3 32 32 H 1.09001 * 109.47270 * 60.00475 * 6 4 3 33 33 H 0.96997 * 119.99308 * 354.88958 * 9 7 4 34 34 H 1.08009 * 119.78684 * 0.02570 * 11 10 9 35 35 H 1.07997 * 119.84420 * 180.26330 * 12 11 10 36 36 H 1.07998 * 120.05663 * 179.76440 * 13 12 11 37 37 H 0.97002 * 120.00390 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.15832 * 359.95309 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3304 -0.0006 5 1 3.8720 0.7317 -0.8426 6 6 4.0190 0.7072 1.3064 7 6 4.0649 2.7319 -0.1244 8 8 3.3015 3.6711 -0.2047 9 7 5.3961 2.9418 -0.1469 10 6 5.8978 4.2291 -0.3688 11 6 5.2259 5.0994 -1.2238 12 6 5.7109 6.3773 -1.4468 13 6 6.8695 6.7979 -0.8333 14 6 7.5622 5.9276 0.0290 15 6 8.7524 6.3526 0.6632 16 1 9.4866 5.6252 0.9769 17 6 8.9791 7.7156 0.8844 18 7 7.9851 8.5635 0.8168 19 14 10.7011 8.3246 1.2760 20 1 11.6406 7.1747 1.2942 21 1 11.1295 9.2980 0.2396 22 1 10.7019 8.9852 2.6060 23 6 7.0628 4.6329 0.2564 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8306 -0.5262 0.7814 28 1 1.6460 1.8947 -0.8899 29 1 1.6460 1.8947 0.8900 30 1 5.1086 0.6785 1.3061 31 1 3.6719 1.3060 2.1485 32 1 3.6285 -0.3065 1.3960 33 1 6.0062 2.2004 -0.0092 34 1 4.3184 4.7771 -1.7128 35 1 5.1800 7.0458 -2.1083 36 1 7.2460 7.7940 -1.0132 37 1 8.1422 9.5084 0.9698 38 1 7.5865 3.9575 0.9165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313433917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:26 Heat of formation + Delta-G solvation = -24.982436 kcal Electronic energy + Delta-G solvation = -19061.434934 eV Core-core repulsion = 16095.989553 eV Total energy + Delta-G solvation = -2965.445380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95273 -37.51758 -36.42310 -34.42087 -33.31614 -32.52885 -29.82433 -28.19228 -26.93526 -25.25158 -24.78784 -22.64532 -21.01424 -20.62647 -19.34104 -17.64086 -16.92208 -16.40456 -15.56298 -15.17160 -14.85517 -14.68766 -14.37092 -14.13958 -13.55735 -13.32476 -12.96223 -12.83846 -12.53836 -12.40638 -12.20570 -11.77145 -11.60525 -11.27699 -11.18712 -11.10278 -11.05571 -10.89869 -10.45809 -10.15821 -9.60397 -9.35409 -9.18201 -8.89475 -8.66808 -7.45818 -6.91866 -6.71691 -4.35660 2.59713 2.81041 3.08112 3.13197 3.17977 3.36006 3.53857 3.94385 4.20897 4.65094 4.68800 4.85465 4.93668 5.16606 5.26566 5.36815 5.54952 5.59879 5.68048 5.69832 5.75616 5.94402 6.04608 6.30715 6.55787 6.73974 6.77468 6.93434 7.02954 7.06043 7.13868 7.26434 7.61381 7.68684 7.99350 8.04481 8.15378 8.32832 8.59688 8.72219 8.90204 8.98238 10.21550 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045666 B = 0.003735 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.998618 B = 7495.819335 C = 7853.365948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.697 5.697 3 C 0.076 3.924 4 C -0.109 4.109 5 H 0.105 0.895 6 C -0.147 4.147 7 C 0.511 3.489 8 O -0.524 6.524 9 N -0.666 5.666 10 C 0.152 3.848 11 C -0.226 4.226 12 C -0.095 4.095 13 C -0.168 4.168 14 C 0.122 3.878 15 C -0.465 4.465 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.794 5.794 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.244 4.244 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.339 0.661 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.280 0.720 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -13.187 0.163 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.328 5.328 3 C -0.053 4.053 4 C -0.131 4.131 5 H 0.124 0.876 6 C -0.205 4.205 7 C 0.297 3.703 8 O -0.399 6.399 9 N -0.309 5.309 10 C 0.061 3.939 11 C -0.247 4.247 12 C -0.115 4.115 13 C -0.187 4.187 14 C 0.119 3.881 15 C -0.495 4.495 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.420 5.420 19 Si 0.732 3.268 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.266 4.266 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.157 0.843 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.014 -12.359 -0.548 14.221 hybrid contribution 0.829 0.303 1.276 1.552 sum -6.185 -12.055 0.728 13.569 Atomic orbital electron populations 1.22174 0.87630 1.01669 1.00714 1.60444 1.07933 1.14513 1.49891 1.21744 0.92423 0.88846 1.02285 1.21278 0.96655 0.94306 1.00877 0.87650 1.21818 1.01838 1.00848 0.95998 1.20494 0.82497 0.90780 0.76579 1.90722 1.57035 1.44096 1.48084 1.43489 1.06670 1.09895 1.70884 1.17444 0.95331 0.83775 0.97372 1.20296 1.03012 0.95609 1.05811 1.20588 0.96635 0.94696 0.99532 1.21372 0.96811 1.01073 0.99493 1.17377 0.91793 0.89825 0.89126 1.19537 1.03325 0.92033 1.34558 0.90468 1.25893 0.98369 0.96877 0.93035 1.69843 1.31885 1.04295 1.35951 0.86276 0.82552 0.79398 0.78549 1.18455 1.19728 1.20068 1.20704 0.99329 0.99376 1.07150 0.91560 0.91477 0.95936 0.84319 0.89918 0.94272 0.91671 0.92106 0.91424 0.76642 0.88228 0.89062 0.86315 0.90955 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.07 0.64 0.88 16 2 N -0.70 -6.93 6.85 -121.14 -0.83 -7.76 16 3 C 0.08 0.94 4.49 -3.83 -0.02 0.92 16 4 C -0.11 -1.33 2.94 -91.77 -0.27 -1.60 16 5 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 6 C -0.15 -1.42 8.86 37.16 0.33 -1.10 16 7 C 0.51 8.84 6.88 -10.98 -0.08 8.77 16 8 O -0.52 -11.31 13.66 5.54 0.08 -11.24 16 9 N -0.67 -11.88 5.26 -9.91 -0.05 -11.93 16 10 C 0.15 3.49 6.25 -83.77 -0.52 2.96 16 11 C -0.23 -5.48 8.66 -39.10 -0.34 -5.82 16 12 C -0.10 -2.36 10.02 -39.69 -0.40 -2.76 16 13 C -0.17 -4.46 8.69 -38.84 -0.34 -4.80 16 14 C 0.12 3.26 5.57 -106.85 -0.59 2.67 16 15 C -0.46 -12.30 9.05 -37.74 -0.34 -12.64 16 16 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 17 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 18 N -0.79 -20.80 10.94 55.55 0.61 -20.19 16 19 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.24 -5.94 9.70 -38.68 -0.38 -6.31 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.34 2.81 7.07 -39.29 -0.28 2.53 16 28 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.58 7.46 -51.93 -0.39 0.19 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.50 6.68 -51.93 -0.35 0.16 16 33 H 0.40 5.64 8.10 -40.82 -0.33 5.31 16 34 H 0.10 2.38 6.48 -52.48 -0.34 2.04 16 35 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 37 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -30.61 315.65 -8.21 -38.82 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.35 Total: 10.91 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -2.39 Total: -17.00 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.27 Total: -39.88 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.61 -8.21 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313433917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds