Wall clock time and date at job start Mon Mar 30 2020 04:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00318 * 2 1 4 4 C 1.53001 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47210 * 55.00121 * 4 3 2 6 6 C 1.53002 * 109.46922 * 294.99841 * 4 3 2 7 7 C 1.50696 * 109.46957 * 175.00403 * 4 3 2 8 8 O 1.21296 * 120.00151 * 359.97438 * 7 4 3 9 9 N 1.34783 * 120.00211 * 180.02562 * 7 4 3 10 10 C 1.39933 * 120.00097 * 174.89452 * 9 7 4 11 11 C 1.39286 * 119.94887 * 325.51865 * 10 9 7 12 12 C 1.38492 * 120.43110 * 179.76480 * 11 10 9 13 13 C 1.37684 * 120.31747 * 0.51242 * 12 11 10 14 14 C 1.40740 * 119.88583 * 359.74795 * 13 12 11 15 15 C 1.41407 * 120.20885 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99810 * 205.16046 * 15 14 13 17 17 C 1.39932 * 120.00254 * 25.16906 * 15 14 13 18 18 N 1.30828 * 119.99981 * 16.80193 * 17 15 14 19 19 Si 1.86799 * 120.00005 * 196.81054 * 17 15 14 20 20 H 1.48498 * 109.47373 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47115 * 119.99719 * 19 17 15 22 22 H 1.48503 * 109.46804 * 239.99247 * 19 17 15 23 23 C 1.38245 * 119.94457 * 145.79920 * 10 9 7 24 24 H 1.08999 * 109.46936 * 59.99215 * 1 2 3 25 25 H 1.08997 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47117 * 299.99997 * 1 2 3 27 27 H 1.00903 * 110.99720 * 123.95665 * 2 1 3 28 28 H 1.08994 * 109.47128 * 300.00327 * 3 2 1 29 29 H 1.09003 * 109.47052 * 60.00111 * 3 2 1 30 30 H 1.09001 * 109.46600 * 180.02562 * 6 4 3 31 31 H 1.08998 * 109.47116 * 300.00002 * 6 4 3 32 32 H 1.09001 * 109.47270 * 60.00475 * 6 4 3 33 33 H 0.96997 * 119.99308 * 354.88958 * 9 7 4 34 34 H 1.08009 * 119.78684 * 0.02570 * 11 10 9 35 35 H 1.07997 * 119.84420 * 180.26330 * 12 11 10 36 36 H 1.07998 * 120.05663 * 179.76440 * 13 12 11 37 37 H 0.97002 * 120.00390 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.15832 * 359.95309 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3304 -0.0006 5 1 3.8720 0.7317 -0.8426 6 6 4.0190 0.7072 1.3064 7 6 4.0649 2.7319 -0.1244 8 8 3.3015 3.6711 -0.2047 9 7 5.3961 2.9418 -0.1469 10 6 5.8978 4.2291 -0.3688 11 6 5.2259 5.0994 -1.2238 12 6 5.7109 6.3773 -1.4468 13 6 6.8695 6.7979 -0.8333 14 6 7.5622 5.9276 0.0290 15 6 8.7524 6.3526 0.6632 16 1 9.4866 5.6252 0.9769 17 6 8.9791 7.7156 0.8844 18 7 7.9851 8.5635 0.8168 19 14 10.7011 8.3246 1.2760 20 1 11.6406 7.1747 1.2942 21 1 11.1295 9.2980 0.2396 22 1 10.7019 8.9852 2.6060 23 6 7.0628 4.6329 0.2564 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8306 -0.5262 0.7814 28 1 1.6460 1.8947 -0.8899 29 1 1.6460 1.8947 0.8900 30 1 5.1086 0.6785 1.3061 31 1 3.6719 1.3060 2.1485 32 1 3.6285 -0.3065 1.3960 33 1 6.0062 2.2004 -0.0092 34 1 4.3184 4.7771 -1.7128 35 1 5.1800 7.0458 -2.1083 36 1 7.2460 7.7940 -1.0132 37 1 8.1422 9.5084 0.9698 38 1 7.5865 3.9575 0.9165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313433917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:26 Heat of formation + Delta-G solvation = -45.650967 kcal Electronic energy + Delta-G solvation = -19062.331188 eV Core-core repulsion = 16095.989553 eV Total energy + Delta-G solvation = -2966.341635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42998 -39.21129 -37.53318 -36.14850 -34.96871 -33.65906 -31.78170 -29.94588 -27.77561 -27.19752 -25.77442 -23.92029 -22.86403 -22.21951 -20.76494 -19.43614 -18.25412 -17.55003 -17.23277 -16.76378 -16.52845 -16.08446 -15.76410 -15.10696 -14.98114 -14.73677 -14.40526 -14.15275 -14.07813 -13.55931 -13.36277 -13.23708 -12.97608 -12.89911 -12.74494 -12.51269 -12.23581 -12.15058 -11.98234 -11.91245 -11.46842 -11.11971 -10.95161 -10.57052 -9.48899 -9.43048 -8.77914 -8.60566 -6.36440 0.85210 0.95921 1.40214 1.49515 1.55914 1.78372 2.15556 2.23887 2.75203 3.29881 3.63176 3.71526 3.89418 3.97482 4.32943 4.41338 4.53153 4.55576 4.65119 4.72523 4.76172 4.89662 5.00201 5.01796 5.03118 5.03453 5.12181 5.22039 5.25614 5.33939 5.74168 5.83452 5.89295 6.07635 6.10343 6.28407 6.44799 6.61328 6.71152 6.92310 6.98105 7.29279 8.34585 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.045666 B = 0.003735 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.998618 B = 7495.819335 C = 7853.365948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.693 5.693 3 C 0.082 3.918 4 C -0.094 4.094 5 H 0.127 0.873 6 C -0.144 4.144 7 C 0.508 3.492 8 O -0.570 6.570 9 N -0.657 5.657 10 C 0.162 3.838 11 C -0.240 4.240 12 C -0.099 4.099 13 C -0.196 4.196 14 C 0.095 3.905 15 C -0.495 4.495 16 H 0.082 0.918 17 C 0.033 3.967 18 N -0.828 5.828 19 Si 0.986 3.014 20 H -0.254 1.254 21 H -0.266 1.266 22 H -0.268 1.268 23 C -0.254 4.254 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.022 0.978 27 H 0.351 0.649 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.420 0.580 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.288 0.712 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 -15.290 0.840 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.326 5.326 3 C -0.048 4.048 4 C -0.115 4.115 5 H 0.145 0.855 6 C -0.202 4.202 7 C 0.296 3.704 8 O -0.448 6.448 9 N -0.302 5.302 10 C 0.069 3.931 11 C -0.261 4.261 12 C -0.118 4.118 13 C -0.216 4.216 14 C 0.092 3.908 15 C -0.524 4.524 16 H 0.100 0.900 17 C -0.182 4.182 18 N -0.454 5.454 19 Si 0.806 3.194 20 H -0.177 1.177 21 H -0.190 1.190 22 H -0.193 1.193 23 C -0.275 4.275 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.041 0.959 27 H 0.171 0.829 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.258 0.742 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.405 -14.522 0.135 15.872 hybrid contribution 0.514 0.896 1.055 1.477 sum -5.891 -13.626 1.190 14.893 Atomic orbital electron populations 1.22247 0.86800 1.02979 1.00409 1.60419 1.08756 1.12809 1.50569 1.21578 0.92583 0.90015 1.00585 1.21249 0.96269 0.90755 1.03269 0.85491 1.21857 1.02695 1.01960 0.93681 1.21501 0.81647 0.92544 0.74682 1.90704 1.58007 1.46198 1.49897 1.43436 1.07563 1.08650 1.70593 1.17483 0.94394 0.85545 0.95684 1.20434 1.03259 0.95853 1.06593 1.20805 0.96186 0.95390 0.99378 1.21311 0.98153 1.00855 1.01250 1.17769 0.92479 0.91061 0.89522 1.19842 1.03746 0.93219 1.35620 0.90000 1.26828 1.02583 0.96520 0.92269 1.69908 1.34205 1.04980 1.36289 0.85105 0.76847 0.78865 0.78540 1.17743 1.19028 1.19262 1.20885 1.00015 0.99000 1.07641 0.92290 0.89321 0.95902 0.82899 0.92125 0.95749 0.90473 0.93272 0.88388 0.74237 0.88151 0.87453 0.87821 0.90168 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 127.69 1.37 1.75 16 2 N -0.69 -12.09 6.85 -537.16 -3.68 -15.77 16 3 C 0.08 1.92 4.49 86.30 0.39 2.31 16 4 C -0.09 -2.07 2.94 -11.54 -0.03 -2.10 16 5 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 6 C -0.14 -2.33 8.86 71.98 0.64 -1.69 16 7 C 0.51 17.09 6.88 87.65 0.60 17.70 16 8 O -0.57 -24.80 13.66 -3.08 -0.04 -24.84 16 9 N -0.66 -22.57 5.26 -303.64 -1.60 -24.17 16 10 C 0.16 7.40 6.25 38.10 0.24 7.64 16 11 C -0.24 -11.80 8.66 22.58 0.20 -11.60 16 12 C -0.10 -5.02 10.02 22.20 0.22 -4.79 16 13 C -0.20 -10.77 8.69 22.75 0.20 -10.57 16 14 C 0.09 5.19 5.57 -21.31 -0.12 5.07 16 15 C -0.49 -26.56 9.05 23.46 0.21 -26.34 16 16 H 0.08 4.16 7.90 -2.91 -0.02 4.13 16 17 C 0.03 1.65 5.16 85.25 0.44 2.09 16 18 N -0.83 -44.19 10.94 21.82 0.24 -43.95 16 19 Si 0.99 38.04 29.59 68.60 2.03 40.07 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 23 C -0.25 -12.39 9.70 22.85 0.22 -12.17 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.35 4.63 7.07 -89.69 -0.63 4.00 16 28 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.08 1.09 7.46 -2.39 -0.02 1.07 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.03 6.68 -2.39 -0.02 1.01 16 33 H 0.42 10.85 8.10 -92.71 -0.75 10.10 16 34 H 0.10 4.88 6.48 -2.91 -0.02 4.86 16 35 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 36 H 0.10 5.91 6.17 -2.91 -0.02 5.89 16 37 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 38 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -68.01 315.65 1.21 -66.81 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.31 Total: 34.58 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 4.57 Total: -32.72 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -5.04 Total: -83.89 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.04 Total: -24.84 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -68.01 1.21 -66.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313433917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.154 kcal (2) G-P(sol) polarization free energy of solvation -68.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds