Wall clock time and date at job start Mon Mar 30 2020 04:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47299 * 2 1 4 4 C 1.53006 * 109.46624 * 239.99956 * 2 1 3 5 5 N 1.46900 * 109.47013 * 60.00627 * 4 2 1 6 6 C 1.50694 * 109.47047 * 120.00378 * 2 1 3 7 7 O 1.21294 * 120.00246 * 119.99768 * 6 2 1 8 8 N 1.34778 * 119.99983 * 299.99293 * 6 2 1 9 9 C 1.39938 * 120.00022 * 174.40296 * 8 6 2 10 10 C 1.39293 * 119.95012 * 145.35712 * 9 8 6 11 11 C 1.38481 * 120.43331 * 179.97438 * 10 9 8 12 12 C 1.37681 * 120.32226 * 0.27585 * 11 10 9 13 13 C 1.40743 * 119.88203 * 359.45377 * 12 11 10 14 14 C 1.41409 * 120.21195 * 180.27061 * 13 12 11 15 15 H 1.07994 * 120.00901 * 214.59288 * 14 13 12 16 16 C 1.39932 * 119.99628 * 34.59343 * 14 13 12 17 17 N 1.30835 * 120.00303 * 5.45214 * 16 14 13 18 18 Si 1.86805 * 120.00027 * 185.45234 * 16 14 13 19 19 H 1.48493 * 109.47058 * 90.00378 * 18 16 14 20 20 H 1.48503 * 109.46984 * 209.99794 * 18 16 14 21 21 H 1.48500 * 109.46976 * 329.99869 * 18 16 14 22 22 C 1.38248 * 119.95014 * 325.33799 * 9 8 6 23 23 H 1.09003 * 109.46962 * 300.00113 * 1 2 3 24 24 H 1.08999 * 109.47440 * 59.99861 * 1 2 3 25 25 H 1.08997 * 109.47463 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47300 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47400 * 300.00072 * 3 2 1 28 28 H 1.08998 * 109.46922 * 60.00402 * 3 2 1 29 29 H 1.09004 * 109.46763 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46955 * 300.00010 * 4 2 1 31 31 H 1.00898 * 110.99810 * 180.02562 * 5 4 2 32 32 H 1.00896 * 110.99349 * 303.94651 * 5 4 2 33 33 H 0.96995 * 120.00055 * 354.41017 * 8 6 2 34 34 H 1.08006 * 119.77967 * 0.02562 * 10 9 8 35 35 H 1.08003 * 119.83887 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.05851 * 179.70078 * 12 11 10 37 37 H 0.96992 * 120.00185 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.15542 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7213 -1.2493 5 7 1.5502 -0.0287 -2.4487 6 6 2.0322 -0.7105 1.2304 7 8 2.7295 -1.6967 1.1191 8 7 1.7067 -0.2500 2.4545 9 6 2.0736 -0.9737 3.5947 10 6 2.4214 -0.3006 4.7635 11 6 2.7856 -1.0067 5.8977 12 6 2.8133 -2.3832 5.8806 13 6 2.4589 -3.0771 4.7085 14 6 2.4794 -4.4908 4.6848 15 1 2.7629 -5.0119 3.7824 16 6 2.1323 -5.2148 5.8309 17 7 1.6868 -4.5891 6.8901 18 14 2.3051 -7.0747 5.8487 19 1 3.6612 -7.4413 6.3301 20 1 1.2837 -7.6581 6.7552 21 1 2.1076 -7.6034 4.4751 22 6 2.0900 -2.3556 3.5594 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1299 -0.7209 -1.2496 30 1 1.6765 -1.7489 -1.2493 31 1 1.8733 -0.4865 -3.2878 32 1 0.5437 0.0414 -2.4401 33 1 1.2181 0.5830 2.5452 34 1 2.4061 0.7791 4.7856 35 1 3.0530 -0.4751 6.7990 36 1 3.1026 -2.9295 6.7661 37 1 1.4466 -5.0909 7.6846 38 1 1.8206 -2.8784 2.6535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313438656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:22 Heat of formation + Delta-G solvation = -27.879564 kcal Electronic energy + Delta-G solvation = -19605.626740 eV Core-core repulsion = 16640.055731 eV Total energy + Delta-G solvation = -2965.571009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18015 -37.59770 -36.16188 -34.44455 -33.08228 -31.92382 -29.78979 -28.03402 -27.41254 -25.45058 -25.26000 -22.80539 -20.96554 -20.36970 -18.73119 -17.76507 -16.88201 -15.90099 -15.49700 -15.22337 -14.79805 -14.54046 -14.36933 -13.90367 -13.58315 -13.35536 -12.88877 -12.83117 -12.32670 -12.16821 -11.98737 -11.84148 -11.64595 -11.22362 -11.13429 -11.03794 -10.91409 -10.85474 -10.43401 -10.10368 -9.57736 -9.34998 -9.10746 -8.88070 -8.81098 -7.36643 -6.89411 -6.59942 -4.34116 2.60198 2.85766 3.12425 3.16185 3.21040 3.37327 3.59322 4.02086 4.51133 4.65268 4.72589 4.82025 4.89617 5.21941 5.51067 5.60033 5.66059 5.69437 5.74964 5.84078 5.94715 6.15862 6.22424 6.24034 6.36769 6.78093 6.94455 7.01340 7.04633 7.08935 7.26252 7.30115 7.57088 7.73655 7.96010 8.13038 8.17839 8.28116 8.66734 8.75360 8.97745 9.00289 10.34316 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.004992 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.997198 B = 5607.531485 C = 6364.313442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.130 4.130 4 C 0.084 3.916 5 N -0.849 5.849 6 C 0.514 3.486 7 O -0.519 6.519 8 N -0.665 5.665 9 C 0.146 3.854 10 C -0.250 4.250 11 C -0.097 4.097 12 C -0.157 4.157 13 C 0.120 3.880 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.812 5.812 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.200 4.200 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.342 0.658 32 H 0.337 0.663 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.278 0.722 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 8.700 -10.756 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.188 4.188 4 C -0.047 4.047 5 N -0.380 5.380 6 C 0.300 3.700 7 O -0.394 6.394 8 N -0.309 5.309 9 C 0.054 3.946 10 C -0.272 4.272 11 C -0.116 4.116 12 C -0.177 4.177 13 C 0.118 3.882 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.439 5.439 18 Si 0.737 3.263 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.222 4.222 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.464 8.544 -10.372 13.662 hybrid contribution -0.784 -1.292 0.047 1.512 sum -3.248 7.252 -10.324 13.028 Atomic orbital electron populations 1.21878 0.92839 1.02652 1.02751 1.20762 0.97004 0.97332 0.93260 1.21738 1.01506 0.93120 1.02430 1.21533 1.00758 0.94482 0.87910 1.58785 1.16233 1.58546 1.04388 1.20455 0.80308 0.84887 0.84367 1.90744 1.36246 1.25987 1.86416 1.43439 1.56765 1.25642 1.05046 1.17474 1.00787 0.91164 0.85169 1.20113 1.15839 0.96960 0.94265 1.20501 1.00518 0.94752 0.95857 1.21365 1.04203 0.92197 0.99946 1.17507 0.87150 0.93388 0.90197 1.19518 1.41179 0.91215 0.97698 0.90568 1.25834 0.92763 1.00921 0.94664 1.69777 1.32961 1.37799 1.03332 0.86257 0.78705 0.82256 0.79109 1.19439 1.20385 1.18769 1.21076 1.09938 0.91013 1.00136 0.91763 0.91248 0.92139 0.92319 0.90405 0.92828 0.90161 0.94482 0.84554 0.84946 0.76863 0.89195 0.88927 0.86420 0.91172 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.05 37.15 0.30 -1.21 16 2 C -0.08 -1.02 0.70 -155.67 -0.11 -1.12 16 3 C -0.13 -1.43 8.21 37.15 0.31 -1.13 16 4 C 0.08 1.05 5.04 -3.82 -0.02 1.03 16 5 N -0.85 -7.84 8.84 -10.37 -0.09 -7.93 16 6 C 0.51 9.21 6.20 -10.99 -0.07 9.14 16 7 O -0.52 -11.66 13.77 5.54 0.08 -11.59 16 8 N -0.67 -11.97 5.11 -9.91 -0.05 -12.02 16 9 C 0.15 3.33 6.25 -83.76 -0.52 2.81 16 10 C -0.25 -5.54 9.97 -39.10 -0.39 -5.93 16 11 C -0.10 -2.28 10.01 -39.70 -0.40 -2.68 16 12 C -0.16 -4.17 8.62 -38.84 -0.33 -4.51 16 13 C 0.12 3.35 5.50 -106.85 -0.59 2.76 16 14 C -0.47 -12.99 9.04 -37.74 -0.34 -13.33 16 15 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 16 C 0.07 1.91 5.31 -17.34 -0.09 1.82 16 17 N -0.81 -21.60 10.98 55.55 0.61 -20.99 16 18 Si 0.91 19.58 29.56 -169.99 -5.03 14.55 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 22 C -0.20 -5.25 8.39 -38.68 -0.32 -5.57 16 23 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16 24 H 0.07 0.57 6.57 -51.93 -0.34 0.23 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.76 7.60 -51.93 -0.39 0.37 16 28 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 29 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 30 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.34 2.66 9.08 -39.29 -0.36 2.30 16 32 H 0.34 2.65 7.03 -39.29 -0.28 2.37 16 33 H 0.40 5.67 7.69 -40.82 -0.31 5.36 16 34 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.12 3.21 6.49 -52.49 -0.34 2.87 16 37 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 38 H 0.10 2.83 6.51 -52.49 -0.34 2.49 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -30.95 311.72 -7.60 -38.55 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.23 Total: 12.66 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.58 Total: -17.92 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.47 Total: -40.95 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.95 -7.60 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313438656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.670 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds