Wall clock time and date at job start Mon Mar 30 2020 04:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47299 * 2 1 4 4 C 1.53006 * 109.46624 * 239.99956 * 2 1 3 5 5 N 1.46900 * 109.47013 * 60.00627 * 4 2 1 6 6 C 1.50694 * 109.47047 * 120.00378 * 2 1 3 7 7 O 1.21294 * 120.00246 * 119.99768 * 6 2 1 8 8 N 1.34778 * 119.99983 * 299.99293 * 6 2 1 9 9 C 1.39938 * 120.00022 * 174.40296 * 8 6 2 10 10 C 1.39293 * 119.95012 * 145.35712 * 9 8 6 11 11 C 1.38481 * 120.43331 * 179.97438 * 10 9 8 12 12 C 1.37681 * 120.32226 * 0.27585 * 11 10 9 13 13 C 1.40743 * 119.88203 * 359.45377 * 12 11 10 14 14 C 1.41409 * 120.21195 * 180.27061 * 13 12 11 15 15 H 1.07994 * 120.00901 * 214.59288 * 14 13 12 16 16 C 1.39932 * 119.99628 * 34.59343 * 14 13 12 17 17 N 1.30835 * 120.00303 * 5.45214 * 16 14 13 18 18 Si 1.86805 * 120.00027 * 185.45234 * 16 14 13 19 19 H 1.48493 * 109.47058 * 90.00378 * 18 16 14 20 20 H 1.48503 * 109.46984 * 209.99794 * 18 16 14 21 21 H 1.48500 * 109.46976 * 329.99869 * 18 16 14 22 22 C 1.38248 * 119.95014 * 325.33799 * 9 8 6 23 23 H 1.09003 * 109.46962 * 300.00113 * 1 2 3 24 24 H 1.08999 * 109.47440 * 59.99861 * 1 2 3 25 25 H 1.08997 * 109.47463 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47300 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47400 * 300.00072 * 3 2 1 28 28 H 1.08998 * 109.46922 * 60.00402 * 3 2 1 29 29 H 1.09004 * 109.46763 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.46955 * 300.00010 * 4 2 1 31 31 H 1.00898 * 110.99810 * 180.02562 * 5 4 2 32 32 H 1.00896 * 110.99349 * 303.94651 * 5 4 2 33 33 H 0.96995 * 120.00055 * 354.41017 * 8 6 2 34 34 H 1.08006 * 119.77967 * 0.02562 * 10 9 8 35 35 H 1.08003 * 119.83887 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.05851 * 179.70078 * 12 11 10 37 37 H 0.96992 * 120.00185 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.15542 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7213 -1.2493 5 7 1.5502 -0.0287 -2.4487 6 6 2.0322 -0.7105 1.2304 7 8 2.7295 -1.6967 1.1191 8 7 1.7067 -0.2500 2.4545 9 6 2.0736 -0.9737 3.5947 10 6 2.4214 -0.3006 4.7635 11 6 2.7856 -1.0067 5.8977 12 6 2.8133 -2.3832 5.8806 13 6 2.4589 -3.0771 4.7085 14 6 2.4794 -4.4908 4.6848 15 1 2.7629 -5.0119 3.7824 16 6 2.1323 -5.2148 5.8309 17 7 1.6868 -4.5891 6.8901 18 14 2.3051 -7.0747 5.8487 19 1 3.6612 -7.4413 6.3301 20 1 1.2837 -7.6581 6.7552 21 1 2.1076 -7.6034 4.4751 22 6 2.0900 -2.3556 3.5594 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1299 -0.7209 -1.2496 30 1 1.6765 -1.7489 -1.2493 31 1 1.8733 -0.4865 -3.2878 32 1 0.5437 0.0414 -2.4401 33 1 1.2181 0.5830 2.5452 34 1 2.4061 0.7791 4.7856 35 1 3.0530 -0.4751 6.7990 36 1 3.1026 -2.9295 6.7661 37 1 1.4466 -5.0909 7.6846 38 1 1.8206 -2.8784 2.6535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313438656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:22 Heat of formation + Delta-G solvation = -49.589209 kcal Electronic energy + Delta-G solvation = -19606.568141 eV Core-core repulsion = 16640.055731 eV Total energy + Delta-G solvation = -2966.512410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.63954 -39.30933 -37.44442 -36.21377 -34.87273 -32.95217 -31.75598 -29.82225 -28.27375 -27.25903 -26.42145 -24.31906 -22.84538 -22.05341 -20.13248 -19.50309 -18.17412 -17.42384 -17.14915 -16.58955 -16.51442 -16.20094 -15.61536 -15.20723 -14.90252 -14.71234 -14.43170 -14.16491 -13.97136 -13.58607 -13.21785 -13.05966 -12.95686 -12.90311 -12.85361 -12.77257 -12.20544 -12.08257 -11.94801 -11.82806 -11.49191 -11.19277 -10.87897 -10.54761 -9.65894 -9.34490 -8.76497 -8.54598 -6.42409 0.83282 0.96840 1.34958 1.44452 1.49182 1.77633 2.16901 2.22159 2.77010 3.53349 3.57891 3.67582 3.81800 3.96129 4.18187 4.44115 4.58120 4.60275 4.66727 4.76184 4.88113 4.94115 5.01669 5.03094 5.06449 5.11650 5.18999 5.27020 5.31648 5.37673 5.75025 5.82111 6.03306 6.10038 6.13118 6.33641 6.57253 6.62629 6.67101 6.93023 6.98548 7.29501 8.40200 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.004992 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.997198 B = 5607.531485 C = 6364.313442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.126 4.126 4 C 0.089 3.911 5 N -0.837 5.837 6 C 0.508 3.492 7 O -0.571 6.571 8 N -0.654 5.654 9 C 0.151 3.849 10 C -0.238 4.238 11 C -0.095 4.095 12 C -0.182 4.182 13 C 0.089 3.911 14 C -0.509 4.509 15 H 0.060 0.940 16 C 0.035 3.965 17 N -0.838 5.838 18 Si 0.984 3.016 19 H -0.260 1.260 20 H -0.262 1.262 21 H -0.267 1.267 22 C -0.226 4.226 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.352 0.648 32 H 0.349 0.651 33 H 0.419 0.581 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.286 0.714 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 10.920 -11.243 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.042 4.042 5 N -0.369 5.369 6 C 0.297 3.703 7 O -0.449 6.449 8 N -0.299 5.299 9 C 0.058 3.942 10 C -0.259 4.259 11 C -0.114 4.114 12 C -0.202 4.202 13 C 0.086 3.914 14 C -0.540 4.540 15 H 0.078 0.922 16 C -0.177 4.177 17 N -0.465 5.465 18 Si 0.805 3.195 19 H -0.184 1.184 20 H -0.186 1.186 21 H -0.191 1.191 22 C -0.248 4.248 23 H 0.094 0.906 24 H 0.120 0.880 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.258 0.742 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.475 10.827 -10.877 15.736 hybrid contribution -0.478 -1.834 0.127 1.899 sum -3.953 8.993 -10.750 14.563 Atomic orbital electron populations 1.21922 0.90602 1.02398 1.04970 1.20758 0.98537 0.97781 0.90147 1.21752 1.00707 0.91529 1.04300 1.21349 0.99595 0.93849 0.89446 1.58729 1.17114 1.57627 1.03471 1.21538 0.79031 0.84204 0.85569 1.90730 1.38568 1.28464 1.87157 1.43352 1.56680 1.26023 1.03884 1.17574 0.99153 0.90364 0.87096 1.20566 1.13256 0.99111 0.92993 1.20883 0.99107 0.93679 0.97690 1.21308 1.06137 0.93726 0.99041 1.17832 0.88160 0.93957 0.91432 1.19672 1.43968 0.92059 0.98323 0.92214 1.26633 0.91677 1.05733 0.93706 1.69823 1.33047 1.39765 1.03876 0.85189 0.79350 0.75947 0.79054 1.18447 1.18636 1.19125 1.21020 1.11908 0.92857 0.98996 0.90599 0.88014 0.93677 0.93651 0.88416 0.91065 0.92192 0.96594 0.83386 0.83612 0.74233 0.84718 0.85614 0.88043 0.90306 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.05 71.98 0.58 -2.02 16 2 C -0.07 -1.64 0.70 -52.93 -0.04 -1.67 16 3 C -0.13 -2.36 8.21 71.98 0.59 -1.77 16 4 C 0.09 2.19 5.04 86.31 0.43 2.63 16 5 N -0.84 -13.59 8.84 -186.71 -1.65 -15.24 16 6 C 0.51 18.15 6.20 87.65 0.54 18.70 16 7 O -0.57 -26.83 13.77 -3.07 -0.04 -26.87 16 8 N -0.65 -22.63 5.11 -303.64 -1.55 -24.18 16 9 C 0.15 6.86 6.25 38.10 0.24 7.10 16 10 C -0.24 -9.98 9.97 22.58 0.23 -9.76 16 11 C -0.09 -4.34 10.01 22.20 0.22 -4.12 16 12 C -0.18 -9.92 8.62 22.75 0.20 -9.72 16 13 C 0.09 5.19 5.50 -21.31 -0.12 5.07 16 14 C -0.51 -30.19 9.04 23.46 0.21 -29.98 16 15 H 0.06 3.57 7.85 -2.91 -0.02 3.54 16 16 C 0.04 1.89 5.31 85.25 0.45 2.35 16 17 N -0.84 -45.78 10.98 21.82 0.24 -45.54 16 18 Si 0.98 41.20 29.56 68.60 2.03 43.22 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 C -0.23 -12.40 8.39 22.85 0.19 -12.21 16 23 H 0.08 1.24 7.70 -2.39 -0.02 1.22 16 24 H 0.10 1.24 6.57 -2.39 -0.02 1.22 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.10 1.50 7.60 -2.39 -0.02 1.48 16 28 H 0.07 1.10 7.45 -2.39 -0.02 1.08 16 29 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16 30 H 0.02 0.45 8.10 -2.39 -0.02 0.43 16 31 H 0.35 4.80 9.08 -89.70 -0.81 3.99 16 32 H 0.35 4.38 7.03 -89.70 -0.63 3.75 16 33 H 0.42 10.62 7.69 -92.71 -0.71 9.91 16 34 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.10 5.75 6.49 -2.91 -0.02 5.73 16 37 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 38 H 0.08 4.75 6.51 -2.91 -0.02 4.73 16 Total: -1.00 -72.10 311.72 1.69 -70.41 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -1.06 Total: 33.60 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 3.73 Total: -35.40 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -2.96 Total: -84.96 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.04 Total: -26.87 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -72.10 1.69 -70.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313438656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.820 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds