Wall clock time and date at job start Mon Mar 30 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47163 * 2 1 4 4 C 1.52992 * 109.47323 * 120.00275 * 2 1 3 5 5 N 1.46905 * 109.47019 * 295.00097 * 4 2 1 6 6 C 1.53005 * 109.47303 * 240.00378 * 2 1 3 7 7 C 1.50698 * 109.47344 * 64.99719 * 6 2 1 8 8 O 1.21288 * 119.99951 * 359.97438 * 7 6 2 9 9 N 1.34774 * 120.00423 * 180.02562 * 7 6 2 10 10 C 1.39932 * 120.00588 * 174.86946 * 9 7 6 11 11 C 1.39289 * 119.95092 * 146.37266 * 10 9 7 12 12 C 1.38486 * 120.43338 * 179.97438 * 11 10 9 13 13 C 1.37686 * 120.31668 * 0.02562 * 12 11 10 14 14 C 1.40736 * 119.88715 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.21162 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00221 * 151.73803 * 15 14 13 17 17 C 1.39940 * 119.99462 * 331.74090 * 15 14 13 18 18 N 1.30824 * 120.00180 * 349.00204 * 17 15 14 19 19 Si 1.86803 * 119.99597 * 169.00856 * 17 15 14 20 20 H 1.48500 * 109.47193 * 94.99138 * 19 17 15 21 21 H 1.48499 * 109.46705 * 214.98880 * 19 17 15 22 22 H 1.48495 * 109.47303 * 334.98639 * 19 17 15 23 23 C 1.38248 * 119.94689 * 326.11050 * 10 9 7 24 24 H 1.09000 * 109.47099 * 299.99912 * 1 2 3 25 25 H 1.09009 * 109.47029 * 59.99759 * 1 2 3 26 26 H 1.08998 * 109.46598 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47377 * 174.99964 * 4 2 1 28 28 H 1.09004 * 109.47284 * 54.99628 * 4 2 1 29 29 H 1.00900 * 110.99566 * 56.04351 * 5 4 2 30 30 H 1.00896 * 111.00259 * 179.97438 * 5 4 2 31 31 H 1.08995 * 109.47569 * 185.00059 * 6 2 1 32 32 H 1.08998 * 109.46743 * 305.00241 * 6 2 1 33 33 H 0.96997 * 119.99643 * 354.87405 * 9 7 6 34 34 H 1.07998 * 119.78502 * 0.02562 * 11 10 9 35 35 H 1.07993 * 119.84577 * 180.02562 * 12 11 10 36 36 H 1.08006 * 120.05239 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99981 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.15839 * 359.96502 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6514 0.0374 2.4456 6 6 2.0401 -0.7212 -1.2493 7 6 1.6414 0.0571 -2.4766 8 8 1.0109 1.0870 -2.3633 9 7 1.9845 -0.3917 -3.7002 10 6 1.5239 0.2711 -4.8433 11 6 2.3233 0.3303 -5.9824 12 6 1.8772 0.9832 -7.1193 13 6 0.6375 1.5819 -7.1356 14 6 -0.1809 1.5312 -5.9918 15 6 -1.4552 2.1442 -6.0008 16 1 -2.2443 1.7588 -5.3722 17 6 -1.6937 3.2503 -6.8243 18 7 -0.6949 3.8501 -7.4195 19 14 -3.4381 3.8703 -7.0734 20 1 -3.7138 4.9709 -6.1153 21 1 -3.5909 4.3733 -8.4622 22 1 -4.3961 2.7598 -6.8409 23 6 0.2738 0.8615 -4.8421 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1263 -0.7995 1.2055 28 1 1.6054 -1.7198 1.2951 29 1 0.6528 0.1792 2.4752 30 1 1.9765 -0.4191 3.2846 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2953 33 1 2.5507 -1.1743 -3.7885 34 1 3.2971 -0.1367 -5.9793 35 1 2.5047 1.0229 -7.9974 36 1 0.2940 2.0903 -8.0245 37 1 -0.8603 4.6165 -7.9906 38 1 -0.3487 0.8120 -3.9610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313441758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:30 Heat of formation + Delta-G solvation = -30.784842 kcal Electronic energy + Delta-G solvation = -19234.365214 eV Core-core repulsion = 16268.668223 eV Total energy + Delta-G solvation = -2965.696991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82671 -37.51173 -36.36516 -34.37911 -32.98162 -32.19099 -29.78290 -28.80376 -27.02105 -25.32688 -25.15362 -21.71656 -20.84569 -20.01188 -19.40576 -17.66764 -16.76486 -16.07428 -15.67116 -15.34732 -15.12925 -14.71921 -14.46907 -13.83401 -13.67827 -13.06363 -12.96884 -12.83759 -12.49971 -12.15572 -11.97071 -11.59094 -11.26486 -11.08100 -11.06976 -10.82880 -10.76427 -10.59090 -10.45879 -10.07170 -9.70002 -9.36555 -9.07418 -8.87027 -8.81248 -7.38662 -6.85347 -6.63131 -4.31585 2.65115 2.87116 3.12148 3.17096 3.22253 3.41929 3.66268 4.00873 4.43205 4.70743 4.83622 4.86858 4.97858 5.33236 5.38560 5.50639 5.55473 5.71350 5.74883 5.91313 6.06988 6.26706 6.39083 6.41022 6.55430 6.83906 6.95852 7.05292 7.09042 7.11075 7.23468 7.30632 7.60138 7.76469 8.00983 8.12437 8.22526 8.31529 8.68163 8.80222 8.98405 9.02152 10.30222 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.004748 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.330189 B = 5895.861623 C = 6933.737369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 H 0.088 0.912 4 C 0.066 3.934 5 N -0.852 5.852 6 C -0.135 4.135 7 C 0.502 3.498 8 O -0.510 6.510 9 N -0.672 5.672 10 C 0.150 3.850 11 C -0.260 4.260 12 C -0.095 4.095 13 C -0.168 4.168 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.801 5.801 19 Si 0.910 3.090 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.208 4.208 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.025 0.975 29 H 0.342 0.658 30 H 0.338 0.662 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.278 0.722 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -9.489 10.836 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.095 4.095 3 H 0.106 0.894 4 C -0.065 4.065 5 N -0.382 5.382 6 C -0.176 4.176 7 C 0.288 3.712 8 O -0.384 6.384 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.281 4.281 12 C -0.114 4.114 13 C -0.188 4.188 14 C 0.116 3.884 15 C -0.488 4.488 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.428 5.428 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.229 4.229 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.104 -7.968 10.509 13.812 hybrid contribution -0.804 -0.910 0.055 1.215 sum 3.300 -8.877 10.564 14.187 Atomic orbital electron populations 1.21985 0.94737 1.01040 1.03571 1.20882 0.96668 1.00680 0.91233 0.89357 1.21845 1.00178 0.94126 0.90305 1.58707 1.20261 1.54731 1.04488 1.21693 1.02606 1.00086 0.93187 1.20605 0.80295 0.85918 0.84362 1.90743 1.38301 1.23332 1.86055 1.43529 1.51753 1.31153 1.05153 1.17452 0.93637 0.97915 0.85208 1.20065 0.99512 1.13188 0.95344 1.20483 0.96531 0.98311 0.96036 1.21406 0.94890 1.03245 0.99270 1.17507 0.92794 0.88676 0.89456 1.19546 0.97199 1.11155 1.20940 0.90608 1.25875 0.98755 0.95932 0.93708 1.69804 1.32190 1.17027 1.23735 0.86266 0.82493 0.79526 0.78208 1.19605 1.20138 1.18552 1.20971 0.94650 1.08736 0.98553 0.92931 0.89878 0.93776 0.91158 0.95655 0.84426 0.84989 0.89184 0.89212 0.76946 0.89356 0.89067 0.86099 0.91063 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.71 37.16 0.32 -1.72 16 2 C -0.08 -0.93 2.24 -90.62 -0.20 -1.13 16 3 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 4 C 0.07 0.63 6.24 -3.83 -0.02 0.61 16 5 N -0.85 -7.95 9.62 -10.37 -0.10 -8.05 16 6 C -0.13 -1.59 5.18 -27.88 -0.14 -1.74 16 7 C 0.50 8.77 7.28 -10.99 -0.08 8.69 16 8 O -0.51 -11.30 11.68 5.55 0.06 -11.24 16 9 N -0.67 -11.88 5.34 -9.91 -0.05 -11.93 16 10 C 0.15 3.41 6.26 -83.77 -0.52 2.89 16 11 C -0.26 -5.79 9.97 -39.10 -0.39 -6.18 16 12 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 13 C -0.17 -4.48 8.66 -38.84 -0.34 -4.82 16 14 C 0.12 3.30 5.55 -106.85 -0.59 2.71 16 15 C -0.46 -12.74 9.06 -37.74 -0.34 -13.09 16 16 H 0.08 2.05 7.87 -52.49 -0.41 1.63 16 17 C 0.07 1.92 5.25 -17.34 -0.09 1.83 16 18 N -0.80 -21.50 10.82 55.55 0.60 -20.90 16 19 Si 0.91 19.45 29.57 -169.99 -5.03 14.42 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.21 -5.42 8.39 -38.68 -0.32 -5.75 16 24 H 0.05 0.62 6.68 -51.93 -0.35 0.27 16 25 H 0.08 1.40 5.95 -51.92 -0.31 1.09 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.34 3.04 7.25 -39.29 -0.28 2.75 16 30 H 0.34 2.41 9.08 -39.29 -0.36 2.05 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.40 5.32 8.82 -40.82 -0.36 4.96 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 36 H 0.12 3.30 6.18 -52.48 -0.32 2.98 16 37 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 38 H 0.11 2.83 6.44 -52.49 -0.34 2.49 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -31.59 312.50 -8.17 -39.76 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -5.24 Total: 13.55 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.13 Total: -20.33 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.45 Total: -40.88 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.06 Total: -11.24 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.59 -8.17 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.976 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds