Wall clock time and date at job start Mon Mar 30 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47163 * 2 1 4 4 C 1.52992 * 109.47323 * 120.00275 * 2 1 3 5 5 N 1.46905 * 109.47019 * 295.00097 * 4 2 1 6 6 C 1.53005 * 109.47303 * 240.00378 * 2 1 3 7 7 C 1.50698 * 109.47344 * 64.99719 * 6 2 1 8 8 O 1.21288 * 119.99951 * 359.97438 * 7 6 2 9 9 N 1.34774 * 120.00423 * 180.02562 * 7 6 2 10 10 C 1.39932 * 120.00588 * 174.86946 * 9 7 6 11 11 C 1.39289 * 119.95092 * 146.37266 * 10 9 7 12 12 C 1.38486 * 120.43338 * 179.97438 * 11 10 9 13 13 C 1.37686 * 120.31668 * 0.02562 * 12 11 10 14 14 C 1.40736 * 119.88715 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.21162 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00221 * 151.73803 * 15 14 13 17 17 C 1.39940 * 119.99462 * 331.74090 * 15 14 13 18 18 N 1.30824 * 120.00180 * 349.00204 * 17 15 14 19 19 Si 1.86803 * 119.99597 * 169.00856 * 17 15 14 20 20 H 1.48500 * 109.47193 * 94.99138 * 19 17 15 21 21 H 1.48499 * 109.46705 * 214.98880 * 19 17 15 22 22 H 1.48495 * 109.47303 * 334.98639 * 19 17 15 23 23 C 1.38248 * 119.94689 * 326.11050 * 10 9 7 24 24 H 1.09000 * 109.47099 * 299.99912 * 1 2 3 25 25 H 1.09009 * 109.47029 * 59.99759 * 1 2 3 26 26 H 1.08998 * 109.46598 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47377 * 174.99964 * 4 2 1 28 28 H 1.09004 * 109.47284 * 54.99628 * 4 2 1 29 29 H 1.00900 * 110.99566 * 56.04351 * 5 4 2 30 30 H 1.00896 * 111.00259 * 179.97438 * 5 4 2 31 31 H 1.08995 * 109.47569 * 185.00059 * 6 2 1 32 32 H 1.08998 * 109.46743 * 305.00241 * 6 2 1 33 33 H 0.96997 * 119.99643 * 354.87405 * 9 7 6 34 34 H 1.07998 * 119.78502 * 0.02562 * 11 10 9 35 35 H 1.07993 * 119.84577 * 180.02562 * 12 11 10 36 36 H 1.08006 * 120.05239 * 179.97438 * 13 12 11 37 37 H 0.97001 * 119.99981 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.15839 * 359.96502 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6514 0.0374 2.4456 6 6 2.0401 -0.7212 -1.2493 7 6 1.6414 0.0571 -2.4766 8 8 1.0109 1.0870 -2.3633 9 7 1.9845 -0.3917 -3.7002 10 6 1.5239 0.2711 -4.8433 11 6 2.3233 0.3303 -5.9824 12 6 1.8772 0.9832 -7.1193 13 6 0.6375 1.5819 -7.1356 14 6 -0.1809 1.5312 -5.9918 15 6 -1.4552 2.1442 -6.0008 16 1 -2.2443 1.7588 -5.3722 17 6 -1.6937 3.2503 -6.8243 18 7 -0.6949 3.8501 -7.4195 19 14 -3.4381 3.8703 -7.0734 20 1 -3.7138 4.9709 -6.1153 21 1 -3.5909 4.3733 -8.4622 22 1 -4.3961 2.7598 -6.8409 23 6 0.2738 0.8615 -4.8421 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1263 -0.7995 1.2055 28 1 1.6054 -1.7198 1.2951 29 1 0.6528 0.1792 2.4752 30 1 1.9765 -0.4191 3.2846 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2953 33 1 2.5507 -1.1743 -3.7885 34 1 3.2971 -0.1367 -5.9793 35 1 2.5047 1.0229 -7.9974 36 1 0.2940 2.0903 -8.0245 37 1 -0.8603 4.6165 -7.9906 38 1 -0.3487 0.8120 -3.9610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313441758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:30 Heat of formation + Delta-G solvation = -53.302483 kcal Electronic energy + Delta-G solvation = -19235.341653 eV Core-core repulsion = 16268.668223 eV Total energy + Delta-G solvation = -2966.673430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30971 -39.17933 -37.49631 -36.12440 -34.79834 -33.10787 -31.74746 -30.38269 -28.32306 -27.24893 -26.15261 -23.34511 -22.70882 -21.33274 -20.71440 -19.48581 -18.11817 -17.45038 -16.90833 -16.78484 -16.59333 -16.42867 -15.92288 -15.07054 -15.01409 -14.64742 -14.57882 -14.05613 -13.83912 -13.63180 -13.42625 -13.11469 -12.96089 -12.82018 -12.53659 -12.21816 -12.08130 -11.98402 -11.77785 -11.70418 -11.55800 -11.19118 -10.80366 -10.51273 -9.54967 -9.36324 -8.70077 -8.57634 -6.39317 0.88845 0.99714 1.34993 1.46404 1.50641 1.86938 2.20279 2.31164 2.75608 3.65787 3.72357 3.75007 3.97835 4.11058 4.32538 4.46611 4.57038 4.62358 4.64537 4.70687 4.77103 4.99947 5.03509 5.08009 5.10944 5.14440 5.27365 5.33683 5.41021 5.49776 5.78361 5.86616 6.07657 6.12281 6.28692 6.36409 6.63758 6.68948 6.71828 6.94234 7.01244 7.42875 8.36921 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.004748 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.330189 B = 5895.861623 C = 6933.737369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.074 3.926 5 N -0.866 5.866 6 C -0.121 4.121 7 C 0.494 3.506 8 O -0.563 6.563 9 N -0.661 5.661 10 C 0.156 3.844 11 C -0.249 4.249 12 C -0.094 4.094 13 C -0.195 4.195 14 C 0.087 3.913 15 C -0.503 4.503 16 H 0.065 0.935 17 C 0.032 3.968 18 N -0.833 5.833 19 Si 0.985 3.015 20 H -0.267 1.267 21 H -0.259 1.259 22 H -0.259 1.259 23 C -0.234 4.234 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.343 0.657 30 H 0.352 0.648 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.422 0.578 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.287 0.713 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.656 -11.381 11.734 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.056 4.056 5 N -0.398 5.398 6 C -0.161 4.161 7 C 0.284 3.716 8 O -0.441 6.441 9 N -0.308 5.308 10 C 0.063 3.937 11 C -0.270 4.270 12 C -0.113 4.113 13 C -0.215 4.215 14 C 0.084 3.916 15 C -0.533 4.533 16 H 0.083 0.917 17 C -0.181 4.181 18 N -0.460 5.460 19 Si 0.805 3.195 20 H -0.192 1.192 21 H -0.183 1.183 22 H -0.183 1.183 23 C -0.256 4.256 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.260 0.740 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.729 -9.915 11.429 16.178 hybrid contribution -1.167 -0.385 -0.143 1.237 sum 4.562 -10.300 11.285 15.945 Atomic orbital electron populations 1.21921 0.95848 1.01617 1.01685 1.20842 0.95741 0.99473 0.93259 0.92759 1.21756 1.00901 0.94352 0.88630 1.58686 1.20498 1.55365 1.05226 1.21737 1.04924 1.00100 0.89292 1.21756 0.78748 0.85532 0.85577 1.90746 1.40461 1.26080 1.86805 1.43472 1.51820 1.31595 1.03888 1.17551 0.92335 0.96662 0.87193 1.20516 1.00753 1.11600 0.94110 1.20863 0.95587 0.97055 0.97800 1.21365 0.96550 1.05084 0.98544 1.17854 0.93530 0.89628 0.90564 1.19768 0.97630 1.13032 1.22892 0.91706 1.26735 1.03257 0.95373 0.92740 1.69858 1.34285 1.17576 1.24240 0.85163 0.76701 0.78780 0.78828 1.19160 1.18322 1.18308 1.20944 0.96382 1.10689 0.97539 0.92237 0.94371 0.91865 0.89883 0.93652 0.84361 0.83443 0.85588 0.85953 0.73991 0.84949 0.85959 0.87692 0.90243 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 8.71 71.98 0.63 -3.36 16 2 C -0.07 -1.70 2.24 -10.79 -0.02 -1.72 16 3 H 0.05 1.63 7.96 -2.38 -0.02 1.61 16 4 C 0.07 1.17 6.24 86.30 0.54 1.71 16 5 N -0.87 -14.29 9.62 -186.72 -1.80 -16.08 16 6 C -0.12 -2.47 5.18 29.85 0.15 -2.31 16 7 C 0.49 16.86 7.28 87.66 0.64 17.50 16 8 O -0.56 -25.98 11.68 -3.06 -0.04 -26.02 16 9 N -0.66 -22.11 5.34 -303.65 -1.62 -23.73 16 10 C 0.16 7.04 6.26 38.10 0.24 7.28 16 11 C -0.25 -10.52 9.97 22.58 0.23 -10.29 16 12 C -0.09 -4.38 10.02 22.20 0.22 -4.16 16 13 C -0.20 -10.75 8.66 22.75 0.20 -10.55 16 14 C 0.09 5.10 5.55 -21.31 -0.12 4.98 16 15 C -0.50 -29.75 9.06 23.47 0.21 -29.54 16 16 H 0.06 3.78 7.87 -2.91 -0.02 3.76 16 17 C 0.03 1.75 5.25 85.26 0.45 2.19 16 18 N -0.83 -46.33 10.82 21.83 0.24 -46.09 16 19 Si 0.98 41.15 29.57 68.60 2.03 43.18 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 C -0.23 -12.77 8.39 22.85 0.19 -12.58 16 24 H 0.06 1.41 6.68 -2.39 -0.02 1.39 16 25 H 0.04 1.35 5.95 -2.38 -0.01 1.33 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.34 5.55 7.25 -89.69 -0.65 4.90 16 30 H 0.35 4.11 9.08 -89.70 -0.81 3.30 16 31 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.42 9.70 8.82 -92.71 -0.82 8.89 16 34 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 36 H 0.11 6.00 6.18 -2.91 -0.02 5.98 16 37 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 38 H 0.09 4.90 6.44 -2.91 -0.02 4.88 16 Total: -1.00 -74.77 312.50 1.18 -73.59 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -1.18 Total: 36.01 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 3.55 Total: -40.85 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.18 Total: -85.91 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.04 Total: -26.02 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -74.77 1.18 -73.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.287 kcal (2) G-P(sol) polarization free energy of solvation -74.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds