Wall clock time and date at job start Mon Mar 30 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46923 * 2 1 4 4 C 1.34780 * 119.99565 * 179.97438 * 3 2 1 5 5 O 1.21272 * 120.00086 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99581 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46939 * 180.02562 * 6 4 3 8 8 N 1.46502 * 109.47312 * 179.97438 * 7 6 4 9 9 C 1.39683 * 120.00098 * 179.97438 * 8 7 6 10 10 C 1.39338 * 119.95130 * 359.97438 * 9 8 7 11 11 C 1.38476 * 120.42164 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32780 * 359.97438 * 11 10 9 13 13 C 1.40755 * 119.89513 * 0.04526 * 12 11 10 14 14 C 1.41405 * 120.20845 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00205 * 24.35712 * 14 13 12 16 16 C 1.39933 * 119.99735 * 204.35760 * 14 13 12 17 17 N 1.30828 * 119.99831 * 17.84092 * 16 14 13 18 18 Si 1.86796 * 119.99788 * 197.83818 * 16 14 13 19 19 H 1.48501 * 109.47082 * 94.69103 * 18 16 14 20 20 H 1.48503 * 109.47332 * 214.69030 * 18 16 14 21 21 H 1.48501 * 109.47492 * 334.69201 * 18 16 14 22 22 C 1.38280 * 119.95111 * 180.02562 * 9 8 7 23 23 H 1.08999 * 109.47231 * 299.99736 * 1 2 3 24 24 H 1.09005 * 109.47375 * 59.99505 * 1 2 3 25 25 H 1.09002 * 109.47568 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46794 * 240.00371 * 2 1 3 27 27 H 1.09001 * 109.46911 * 120.00337 * 2 1 3 28 28 H 0.96998 * 120.00364 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47221 * 60.00704 * 6 4 3 30 30 H 1.09001 * 109.47449 * 300.00080 * 6 4 3 31 31 H 1.09007 * 109.47002 * 60.00289 * 7 6 4 32 32 H 1.09005 * 109.47375 * 300.00316 * 7 6 4 33 33 H 0.96998 * 119.99975 * 0.02562 * 8 7 6 34 34 H 1.07995 * 119.78931 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.83527 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.05686 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99342 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.16172 * 359.70339 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3757 3.0483 0.0010 8 7 5.8641 4.4295 0.0009 9 6 7.2374 4.6847 0.0014 10 6 8.1419 3.6249 0.0024 11 6 9.5054 3.8667 0.0033 12 6 9.9824 5.1583 0.0028 13 6 9.0808 6.2391 0.0022 14 6 9.5634 7.5682 0.0021 15 1 10.5488 7.7850 -0.3832 16 6 8.7643 8.6028 0.5014 17 7 7.7445 8.3272 1.2733 18 14 9.1536 10.3770 0.0658 19 1 8.3437 10.7874 -1.1093 20 1 8.8296 11.2528 1.2205 21 1 10.5971 10.5015 -0.2601 22 6 7.6972 5.9889 0.0018 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3880 2.1185 0.0004 29 1 3.4822 3.5618 0.8911 30 1 3.4827 3.5624 -0.8888 31 1 5.7390 2.5349 -0.8893 32 1 5.7392 2.5340 0.8907 33 1 5.2338 5.1668 0.0014 34 1 7.7773 2.6083 0.0024 35 1 10.1981 3.0381 0.0037 36 1 11.0467 5.3418 0.0039 37 1 7.1903 9.0444 1.6190 38 1 6.9971 6.8111 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313442284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:17 Heat of formation + Delta-G solvation = -30.178573 kcal Electronic energy + Delta-G solvation = -18549.388789 eV Core-core repulsion = 15583.718087 eV Total energy + Delta-G solvation = -2965.670702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84554 -37.74913 -35.65570 -35.03184 -33.33618 -31.61776 -30.24233 -29.36754 -27.16488 -25.16355 -23.90749 -22.47622 -21.04282 -20.30718 -19.80474 -17.44895 -16.77610 -16.31442 -16.08020 -15.56452 -14.92657 -14.71108 -14.66371 -14.16487 -13.53447 -13.52396 -12.89266 -12.77491 -12.41106 -12.19125 -12.16945 -12.02115 -11.72466 -11.57491 -11.35629 -11.04370 -10.89743 -10.49413 -10.34124 -9.97721 -9.55882 -9.37964 -9.30884 -9.18758 -8.69962 -7.24691 -6.68347 -6.11216 -4.25712 2.54802 2.90570 2.95730 3.12406 3.16837 3.29180 3.39367 4.01340 4.29959 4.62560 4.73737 4.77466 4.81855 4.97656 5.12575 5.12831 5.44781 5.52424 5.56355 5.69637 5.87686 6.17693 6.21060 6.30166 6.35807 6.70209 6.94130 7.17126 7.19556 7.27346 7.43120 7.49802 7.86427 8.02907 8.09018 8.17365 8.23026 8.54216 8.76020 8.88917 9.06665 9.17913 10.30555 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.003460 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.508788 B = 8089.781947 C = 8882.860760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.737 5.737 4 C 0.518 3.482 5 O -0.534 6.534 6 C -0.152 4.152 7 C 0.153 3.847 8 N -0.764 5.764 9 C 0.215 3.785 10 C -0.296 4.296 11 C -0.067 4.067 12 C -0.257 4.257 13 C 0.137 3.863 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.794 5.794 18 Si 0.904 3.096 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.230 4.230 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.401 0.599 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.388 0.612 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.276 0.724 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 -8.249 -1.755 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.391 5.391 4 C 0.304 3.696 5 O -0.410 6.410 6 C -0.192 4.192 7 C 0.027 3.973 8 N -0.398 5.398 9 C 0.116 3.884 10 C -0.319 4.319 11 C -0.085 4.085 12 C -0.277 4.277 13 C 0.134 3.866 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.420 5.420 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.254 4.254 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.235 0.765 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.923 -9.037 -1.608 17.520 hybrid contribution -0.556 1.429 -0.047 1.534 sum -15.479 -7.609 -1.655 17.328 Atomic orbital electron populations 1.22006 0.94500 1.03202 1.02522 1.21285 0.94133 0.83227 1.02449 1.46092 1.07295 1.08862 1.76821 1.20617 0.81968 0.91617 0.75399 1.90731 1.55194 1.46572 1.48524 1.21825 0.98758 0.93818 1.04814 1.20702 0.89554 0.85235 1.01795 1.44364 1.04481 1.04837 1.86106 1.17621 0.81734 0.94041 0.94960 1.19955 0.92906 0.95611 1.23436 1.20299 0.94014 0.95592 0.98639 1.20866 0.97557 0.92464 1.16852 1.17327 0.90843 0.92376 0.86058 1.19558 1.01883 0.91439 1.36605 0.90595 1.25870 0.94113 1.01339 0.92639 1.69882 1.14631 1.34623 1.22848 0.86372 0.80021 0.81876 0.78805 1.19525 1.20479 1.18662 1.20712 0.96308 0.92625 1.15767 0.91955 0.91972 0.90832 0.91539 0.91530 0.76543 0.88380 0.88451 0.92540 0.92517 0.77881 0.89405 0.89587 0.89391 0.91313 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.03 37.16 0.37 -0.44 16 2 C 0.11 0.91 6.39 -4.04 -0.03 0.88 16 3 N -0.74 -6.48 5.56 -60.30 -0.33 -6.81 16 4 C 0.52 6.50 7.83 -10.98 -0.09 6.41 16 5 O -0.53 -9.05 15.98 5.56 0.09 -8.96 16 6 C -0.15 -1.76 5.81 -27.88 -0.16 -1.93 16 7 C 0.15 2.54 4.20 -4.04 -0.02 2.52 16 8 N -0.76 -14.71 5.73 -58.68 -0.34 -15.05 16 9 C 0.21 5.17 6.64 -83.86 -0.56 4.61 16 10 C -0.30 -7.12 9.32 -39.08 -0.36 -7.49 16 11 C -0.07 -1.61 10.01 -39.70 -0.40 -2.01 16 12 C -0.26 -6.69 9.79 -38.83 -0.38 -7.07 16 13 C 0.14 3.81 5.57 -106.85 -0.60 3.21 16 14 C -0.46 -12.74 9.05 -37.74 -0.34 -13.08 16 15 H 0.08 2.01 7.91 -52.48 -0.41 1.60 16 16 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 17 N -0.79 -20.83 10.95 55.55 0.61 -20.22 16 18 Si 0.90 19.04 29.59 -169.99 -5.03 14.01 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 22 C -0.23 -6.12 8.53 -38.68 -0.33 -6.45 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.40 2.32 8.47 -40.82 -0.35 1.98 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.01 7.90 -51.92 -0.41 0.60 16 32 H 0.06 1.04 7.90 -51.93 -0.41 0.63 16 33 H 0.39 6.77 8.48 -40.82 -0.35 6.43 16 34 H 0.09 1.97 6.70 -52.49 -0.35 1.62 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 38 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -31.97 322.38 -8.66 -40.63 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.54 Total: 10.46 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -2.97 Total: -18.92 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.06 Total: -42.08 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.97 -8.66 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.455 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds