Wall clock time and date at job start Mon Mar 30 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46923 * 2 1 4 4 C 1.34780 * 119.99565 * 179.97438 * 3 2 1 5 5 O 1.21272 * 120.00086 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99581 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46939 * 180.02562 * 6 4 3 8 8 N 1.46502 * 109.47312 * 179.97438 * 7 6 4 9 9 C 1.39683 * 120.00098 * 179.97438 * 8 7 6 10 10 C 1.39338 * 119.95130 * 359.97438 * 9 8 7 11 11 C 1.38476 * 120.42164 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32780 * 359.97438 * 11 10 9 13 13 C 1.40755 * 119.89513 * 0.04526 * 12 11 10 14 14 C 1.41405 * 120.20845 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00205 * 24.35712 * 14 13 12 16 16 C 1.39933 * 119.99735 * 204.35760 * 14 13 12 17 17 N 1.30828 * 119.99831 * 17.84092 * 16 14 13 18 18 Si 1.86796 * 119.99788 * 197.83818 * 16 14 13 19 19 H 1.48501 * 109.47082 * 94.69103 * 18 16 14 20 20 H 1.48503 * 109.47332 * 214.69030 * 18 16 14 21 21 H 1.48501 * 109.47492 * 334.69201 * 18 16 14 22 22 C 1.38280 * 119.95111 * 180.02562 * 9 8 7 23 23 H 1.08999 * 109.47231 * 299.99736 * 1 2 3 24 24 H 1.09005 * 109.47375 * 59.99505 * 1 2 3 25 25 H 1.09002 * 109.47568 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46794 * 240.00371 * 2 1 3 27 27 H 1.09001 * 109.46911 * 120.00337 * 2 1 3 28 28 H 0.96998 * 120.00364 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47221 * 60.00704 * 6 4 3 30 30 H 1.09001 * 109.47449 * 300.00080 * 6 4 3 31 31 H 1.09007 * 109.47002 * 60.00289 * 7 6 4 32 32 H 1.09005 * 109.47375 * 300.00316 * 7 6 4 33 33 H 0.96998 * 119.99975 * 0.02562 * 8 7 6 34 34 H 1.07995 * 119.78931 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.83527 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.05686 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99342 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.16172 * 359.70339 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3757 3.0483 0.0010 8 7 5.8641 4.4295 0.0009 9 6 7.2374 4.6847 0.0014 10 6 8.1419 3.6249 0.0024 11 6 9.5054 3.8667 0.0033 12 6 9.9824 5.1583 0.0028 13 6 9.0808 6.2391 0.0022 14 6 9.5634 7.5682 0.0021 15 1 10.5488 7.7850 -0.3832 16 6 8.7643 8.6028 0.5014 17 7 7.7445 8.3272 1.2733 18 14 9.1536 10.3770 0.0658 19 1 8.3437 10.7874 -1.1093 20 1 8.8296 11.2528 1.2205 21 1 10.5971 10.5015 -0.2601 22 6 7.6972 5.9889 0.0018 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3880 2.1185 0.0004 29 1 3.4822 3.5618 0.8911 30 1 3.4827 3.5624 -0.8888 31 1 5.7390 2.5349 -0.8893 32 1 5.7392 2.5340 0.8907 33 1 5.2338 5.1668 0.0014 34 1 7.7773 2.6083 0.0024 35 1 10.1981 3.0381 0.0037 36 1 11.0467 5.3418 0.0039 37 1 7.1903 9.0444 1.6190 38 1 6.9971 6.8111 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313442284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:16 Heat of formation + Delta-G solvation = -51.682590 kcal Electronic energy + Delta-G solvation = -18550.321273 eV Core-core repulsion = 15583.718087 eV Total energy + Delta-G solvation = -2966.603186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85597 -39.58878 -36.91636 -36.25954 -35.20738 -32.82047 -31.34617 -31.21114 -28.75127 -27.13355 -25.03949 -23.46103 -22.73395 -21.68970 -21.38523 -19.15795 -18.06505 -17.63540 -17.02863 -16.90499 -16.50088 -16.33915 -15.81354 -15.78636 -14.82589 -14.63592 -14.54122 -14.14792 -14.03524 -13.53046 -13.36985 -13.12129 -12.79356 -12.73229 -12.69419 -12.55232 -12.38377 -12.27514 -12.05758 -11.54721 -11.31235 -11.06466 -10.99317 -10.51511 -10.12431 -9.25787 -8.60663 -7.93383 -6.30681 1.08475 1.32605 1.40965 1.54235 1.57548 1.59639 2.08246 2.25328 2.81388 2.92882 3.71705 3.85888 4.00631 4.11559 4.18983 4.22492 4.49872 4.51586 4.54076 4.78044 4.91289 4.91696 4.95450 4.99032 5.05389 5.21975 5.26063 5.29737 5.44490 5.45527 5.60640 5.96054 6.09880 6.21821 6.24114 6.50977 6.57647 6.93273 7.04132 7.07059 7.21825 7.27173 8.40191 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.003460 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.508788 B = 8089.781947 C = 8882.860760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.108 3.892 3 N -0.718 5.718 4 C 0.516 3.484 5 O -0.587 6.587 6 C -0.139 4.139 7 C 0.154 3.846 8 N -0.752 5.752 9 C 0.219 3.781 10 C -0.307 4.307 11 C -0.064 4.064 12 C -0.284 4.284 13 C 0.107 3.893 14 C -0.502 4.502 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.820 5.820 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.255 4.255 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.418 0.582 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.398 0.602 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.286 0.714 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.409 -7.636 -1.911 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 N -0.371 5.371 4 C 0.303 3.697 5 O -0.467 6.467 6 C -0.178 4.178 7 C 0.029 3.971 8 N -0.385 5.385 9 C 0.117 3.883 10 C -0.330 4.330 11 C -0.083 4.083 12 C -0.304 4.304 13 C 0.104 3.896 14 C -0.532 4.532 15 H 0.090 0.910 16 C -0.178 4.178 17 N -0.446 5.446 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.186 1.186 22 C -0.279 4.279 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.256 0.744 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.233 0.767 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.086 -8.429 -1.759 19.133 hybrid contribution 0.015 1.123 0.026 1.124 sum -17.071 -7.305 -1.733 18.649 Atomic orbital electron populations 1.21952 0.91646 1.04210 1.03409 1.21395 0.96380 0.82444 1.01357 1.45973 1.06357 1.10027 1.74775 1.20751 0.82795 0.91287 0.74892 1.90718 1.56712 1.47949 1.51316 1.21704 0.94876 0.93931 1.07332 1.20699 0.93128 0.83083 1.00195 1.44370 1.02929 1.06514 1.84708 1.17729 0.83962 0.93249 0.93313 1.20218 0.93071 0.96318 1.23371 1.20631 0.94800 0.95813 0.97054 1.21026 0.97717 0.93111 1.18586 1.17747 0.91907 0.93279 0.86675 1.19800 1.02537 0.92457 1.38374 0.91039 1.26721 0.93643 1.05619 0.91788 1.69922 1.15236 1.36527 1.22892 0.85209 0.79759 0.75859 0.78907 1.18638 1.19174 1.18560 1.20654 0.95874 0.93361 1.17999 0.91056 0.91004 0.89835 0.92674 0.92755 0.74432 0.85968 0.85715 0.93970 0.94347 0.76686 0.87979 0.86682 0.89055 0.90322 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.03 71.98 0.72 -0.40 16 2 C 0.11 1.59 6.39 86.38 0.55 2.14 16 3 N -0.72 -11.05 5.56 -463.07 -2.57 -13.62 16 4 C 0.52 12.21 7.83 87.66 0.69 12.90 16 5 O -0.59 -19.90 15.98 -3.01 -0.05 -19.95 16 6 C -0.14 -2.90 5.81 29.85 0.17 -2.72 16 7 C 0.15 4.99 4.20 86.38 0.36 5.35 16 8 N -0.75 -28.36 5.73 -339.56 -1.95 -30.31 16 9 C 0.22 10.56 6.64 38.17 0.25 10.81 16 10 C -0.31 -14.74 9.32 22.59 0.21 -14.52 16 11 C -0.06 -3.12 10.01 22.19 0.22 -2.89 16 12 C -0.28 -15.13 9.79 22.75 0.22 -14.91 16 13 C 0.11 6.12 5.57 -21.31 -0.12 6.00 16 14 C -0.50 -28.26 9.05 23.46 0.21 -28.05 16 15 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 16 C 0.04 1.92 5.14 85.25 0.44 2.36 16 17 N -0.82 -43.28 10.95 21.82 0.24 -43.04 16 18 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 C -0.25 -13.83 8.53 22.86 0.19 -13.63 16 23 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.07 0.41 8.14 -2.38 -0.02 0.40 16 25 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.42 3.47 8.47 -92.71 -0.79 2.68 16 29 H 0.12 2.02 8.14 -2.39 -0.02 2.01 16 30 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.50 7.90 -2.38 -0.02 1.48 16 32 H 0.04 1.40 7.90 -2.38 -0.02 1.38 16 33 H 0.40 13.36 8.48 -92.71 -0.79 12.58 16 34 H 0.10 4.55 6.70 -2.91 -0.02 4.53 16 35 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 36 H 0.09 4.64 8.06 -2.91 -0.02 4.61 16 37 H 0.29 13.52 8.30 -92.70 -0.77 12.75 16 38 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 Total: -1.00 -71.35 322.38 1.33 -70.01 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.50 Total: 33.55 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 4.13 Total: -37.58 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -4.28 Total: -86.97 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -71.35 1.33 -70.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.329 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds