Wall clock time and date at job start Mon Mar 30 2020 04:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.50699 * 109.46965 * 240.00165 * 2 1 3 5 5 H 1.08004 * 120.00196 * 239.99956 * 4 2 1 6 6 C 1.37879 * 120.00050 * 59.99574 * 4 2 1 7 7 N 1.31510 * 119.99861 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47129 * 60.00118 * 8 6 4 10 10 H 1.48495 * 109.47211 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47386 * 300.00539 * 8 6 4 12 12 C 1.53001 * 109.47547 * 120.00266 * 2 1 3 13 13 N 1.46503 * 109.46732 * 299.99837 * 12 2 1 14 14 C 1.34778 * 119.99606 * 179.97438 * 13 12 2 15 15 O 1.21599 * 120.00402 * 0.02562 * 14 13 12 16 16 C 1.47435 * 119.99637 * 179.97438 * 14 13 12 17 17 C 1.39738 * 120.20860 * 5.95453 * 16 14 13 18 18 C 1.37745 * 119.92544 * 180.02562 * 17 16 14 19 19 C 1.38618 * 120.35390 * 359.74766 * 18 17 16 20 20 C 1.37956 * 120.42037 * 0.50909 * 19 18 17 21 21 C 1.38958 * 120.06235 * 359.48779 * 20 19 18 22 22 N 1.38874 * 120.17678 * 180.27443 * 21 20 19 23 23 H 1.09004 * 109.47008 * 299.99636 * 1 2 3 24 24 H 1.08994 * 109.47353 * 59.99680 * 1 2 3 25 25 H 1.09002 * 109.47091 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47023 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46621 * 300.00632 * 3 2 1 28 28 H 1.08991 * 109.46865 * 60.00034 * 3 2 1 29 29 H 0.97006 * 119.99981 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47044 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47301 * 59.99668 * 12 2 1 32 32 H 0.97001 * 119.99937 * 359.97438 * 13 12 2 33 33 H 1.07994 * 120.03625 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.82317 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.78843 * 180.27874 * 19 18 17 36 36 H 1.08000 * 119.96805 * 179.76670 * 20 19 18 37 37 H 0.97005 * 119.99381 * 24.81542 * 22 21 20 38 38 H 0.96995 * 120.00293 * 204.81495 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3211 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8266 -0.4199 -5.2205 11 1 3.8061 -1.1210 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4915 3.6695 15 8 2.5762 -1.4801 3.7810 16 6 1.3861 0.2039 4.8733 17 6 0.4841 1.2644 4.7539 18 6 0.0296 1.9103 5.8825 19 6 0.4582 1.5107 7.1387 20 6 1.3525 0.4690 7.2730 21 6 1.8222 -0.1949 6.1463 22 7 2.7181 -1.2476 6.2791 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7086 1.1614 -3.4844 30 1 3.1301 -0.7208 1.2493 31 1 1.6768 -1.7490 1.2492 32 1 0.9944 0.7582 2.3564 33 1 0.1443 1.5778 3.7779 34 1 -0.6673 2.7300 5.7883 35 1 0.0925 2.0207 8.0177 36 1 1.6845 0.1662 8.2551 37 1 2.7496 -1.7565 7.1043 38 1 3.3124 -1.4741 5.5467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315714780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:25 Heat of formation + Delta-G solvation = -17.217562 kcal Electronic energy + Delta-G solvation = -19614.271457 eV Core-core repulsion = 16649.162787 eV Total energy + Delta-G solvation = -2965.108670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.08608 -38.15376 -36.34045 -34.52327 -33.17969 -31.45608 -30.37203 -28.61854 -25.72237 -25.70071 -25.02440 -23.32444 -21.90882 -20.25002 -18.81103 -17.72450 -16.70331 -16.60391 -15.84465 -15.28747 -14.91364 -14.67539 -14.43155 -13.96266 -13.89193 -13.14187 -13.01731 -12.86862 -12.47123 -12.16691 -11.91944 -11.38001 -11.31690 -11.17424 -10.84569 -10.72884 -10.48897 -10.38206 -10.19574 -9.63068 -9.51832 -9.21781 -8.98407 -8.79311 -8.44510 -8.30709 -7.54676 -6.01570 -4.11725 1.04673 1.58273 3.19819 3.30393 3.34750 3.38059 3.79607 4.04996 4.07255 4.40737 4.84761 4.91862 5.14054 5.25085 5.42322 5.46278 5.74549 5.89867 6.15684 6.30255 6.33240 6.35140 6.51630 6.53685 6.77335 6.82898 6.83889 6.94904 7.02438 7.02620 7.35493 7.56059 7.60901 7.69536 7.94704 8.01267 8.09677 8.17160 8.38913 8.72899 8.88736 9.53961 10.99815 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.004418 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.024673 B = 6336.182911 C = 6868.387806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.710 5.710 14 C 0.557 3.443 15 O -0.561 6.561 16 C -0.211 4.211 17 C -0.041 4.041 18 C -0.187 4.187 19 C -0.054 4.054 20 C -0.208 4.208 21 C 0.269 3.731 22 N -0.862 5.862 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.398 0.602 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.391 0.609 38 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 2.490 16.374 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.345 3.655 15 O -0.443 6.443 16 C -0.219 4.219 17 C -0.060 4.060 18 C -0.207 4.207 19 C -0.073 4.073 20 C -0.231 4.231 21 C 0.159 3.841 22 N -0.407 5.407 23 H 0.024 0.976 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.219 0.781 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.036 1.908 16.188 16.333 hybrid contribution 0.212 -0.326 -0.831 0.917 sum -0.824 1.583 15.357 15.461 Atomic orbital electron populations 1.21832 0.97745 0.99210 1.00059 1.18361 0.92817 0.92781 0.90568 1.21833 0.98616 0.98336 1.00081 1.20939 1.31561 1.12109 0.89889 0.92510 1.24874 0.94850 0.94915 0.98821 1.69792 1.36607 1.22706 1.23325 0.86631 0.79222 0.79792 0.82192 1.20293 1.21324 1.20300 1.21736 0.98141 0.95817 0.83357 1.46213 1.52367 1.31571 1.05851 1.18102 0.80283 0.83698 0.83371 1.90508 1.40138 1.27167 1.86489 1.19690 1.05999 1.03552 0.92698 1.21177 0.93294 0.92485 0.99040 1.20821 1.04640 1.03054 0.92209 1.21024 0.94259 0.94670 0.97378 1.20720 1.05016 1.00211 0.97157 1.17700 0.87462 0.86981 0.91982 1.42889 1.41671 1.34667 1.21472 0.97560 0.89551 0.95415 0.95419 0.89555 0.97525 0.92948 0.92661 0.92652 0.76606 0.85705 0.85935 0.86045 0.85945 0.78101 0.74756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.57 9.35 55.43 0.52 -23.05 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 13 N -0.71 -13.12 4.91 -61.38 -0.30 -13.42 16 14 C 0.56 10.19 7.74 -12.51 -0.10 10.09 16 15 O -0.56 -11.44 13.82 5.28 0.07 -11.37 16 16 C -0.21 -3.24 5.89 -104.80 -0.62 -3.85 16 17 C -0.04 -0.53 9.52 -39.20 -0.37 -0.91 16 18 C -0.19 -2.07 10.02 -39.62 -0.40 -2.46 16 19 C -0.05 -0.55 10.03 -39.54 -0.40 -0.95 16 20 C -0.21 -2.32 9.92 -39.42 -0.39 -2.71 16 21 C 0.27 3.68 6.76 -83.61 -0.57 3.12 16 22 N -0.86 -10.95 8.47 32.55 0.28 -10.67 16 23 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 24 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.40 6.71 4.23 -40.82 -0.17 6.53 16 33 H 0.13 1.51 6.45 -52.49 -0.34 1.17 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.39 3.74 8.91 -40.82 -0.36 3.38 16 38 H 0.41 6.08 6.13 -40.82 -0.25 5.83 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -28.47 305.98 -7.51 -35.98 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -4.97 Total: 13.07 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.70 Total: -10.86 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.49 Total: -47.14 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.47 -7.51 -35.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315714780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.763 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds