Wall clock time and date at job start Mon Mar 30 2020 04:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.50699 * 109.46965 * 240.00165 * 2 1 3 5 5 H 1.08004 * 120.00196 * 239.99956 * 4 2 1 6 6 C 1.37879 * 120.00050 * 59.99574 * 4 2 1 7 7 N 1.31510 * 119.99861 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47129 * 60.00118 * 8 6 4 10 10 H 1.48495 * 109.47211 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47386 * 300.00539 * 8 6 4 12 12 C 1.53001 * 109.47547 * 120.00266 * 2 1 3 13 13 N 1.46503 * 109.46732 * 299.99837 * 12 2 1 14 14 C 1.34778 * 119.99606 * 179.97438 * 13 12 2 15 15 O 1.21599 * 120.00402 * 0.02562 * 14 13 12 16 16 C 1.47435 * 119.99637 * 179.97438 * 14 13 12 17 17 C 1.39738 * 120.20860 * 5.95453 * 16 14 13 18 18 C 1.37745 * 119.92544 * 180.02562 * 17 16 14 19 19 C 1.38618 * 120.35390 * 359.74766 * 18 17 16 20 20 C 1.37956 * 120.42037 * 0.50909 * 19 18 17 21 21 C 1.38958 * 120.06235 * 359.48779 * 20 19 18 22 22 N 1.38874 * 120.17678 * 180.27443 * 21 20 19 23 23 H 1.09004 * 109.47008 * 299.99636 * 1 2 3 24 24 H 1.08994 * 109.47353 * 59.99680 * 1 2 3 25 25 H 1.09002 * 109.47091 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47023 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46621 * 300.00632 * 3 2 1 28 28 H 1.08991 * 109.46865 * 60.00034 * 3 2 1 29 29 H 0.97006 * 119.99981 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47044 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47301 * 59.99668 * 12 2 1 32 32 H 0.97001 * 119.99937 * 359.97438 * 13 12 2 33 33 H 1.07994 * 120.03625 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.82317 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.78843 * 180.27874 * 19 18 17 36 36 H 1.08000 * 119.96805 * 179.76670 * 20 19 18 37 37 H 0.97005 * 119.99381 * 24.81542 * 22 21 20 38 38 H 0.96995 * 120.00293 * 204.81495 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3211 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8266 -0.4199 -5.2205 11 1 3.8061 -1.1210 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4915 3.6695 15 8 2.5762 -1.4801 3.7810 16 6 1.3861 0.2039 4.8733 17 6 0.4841 1.2644 4.7539 18 6 0.0296 1.9103 5.8825 19 6 0.4582 1.5107 7.1387 20 6 1.3525 0.4690 7.2730 21 6 1.8222 -0.1949 6.1463 22 7 2.7181 -1.2476 6.2791 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 0.7086 1.1614 -3.4844 30 1 3.1301 -0.7208 1.2493 31 1 1.6768 -1.7490 1.2492 32 1 0.9944 0.7582 2.3564 33 1 0.1443 1.5778 3.7779 34 1 -0.6673 2.7300 5.7883 35 1 0.0925 2.0207 8.0177 36 1 1.6845 0.1662 8.2551 37 1 2.7496 -1.7565 7.1043 38 1 3.3124 -1.4741 5.5467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315714780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:25 Heat of formation + Delta-G solvation = -34.781202 kcal Electronic energy + Delta-G solvation = -19615.033073 eV Core-core repulsion = 16649.162787 eV Total energy + Delta-G solvation = -2965.870287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30733 -39.39151 -38.02781 -35.65752 -34.71644 -33.00472 -31.70229 -29.57589 -27.57998 -27.49484 -26.81348 -24.46067 -22.90008 -21.59255 -20.59805 -18.97716 -17.91737 -17.63700 -17.51894 -16.72057 -16.60563 -16.17126 -15.72748 -15.05133 -14.91502 -14.77494 -14.55946 -14.35805 -13.92403 -13.65909 -13.18695 -13.10188 -12.81182 -12.67842 -12.62489 -12.26080 -12.16561 -12.12760 -11.49880 -11.44797 -11.25237 -10.77732 -10.65189 -10.39999 -10.08672 -9.77659 -8.51137 -8.02114 -6.18083 0.04954 0.67819 1.44386 1.45379 1.52105 1.97806 2.33520 2.51198 3.03270 3.11383 3.21360 3.86585 3.95001 4.26704 4.41809 4.50028 4.55147 4.60599 4.69349 4.81099 4.98258 5.03266 5.04056 5.12236 5.17964 5.29977 5.36169 5.49661 5.57843 5.65761 5.66557 5.66803 5.99198 6.13343 6.20056 6.42621 6.62559 6.65987 6.85377 7.02268 7.33308 7.49465 8.96772 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.004418 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.024673 B = 6336.182911 C = 6868.387806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.707 5.707 14 C 0.552 3.448 15 O -0.591 6.591 16 C -0.242 4.242 17 C -0.050 4.050 18 C -0.186 4.186 19 C -0.043 4.043 20 C -0.207 4.207 21 C 0.253 3.747 22 N -0.863 5.863 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.406 0.594 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.404 0.596 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 3.654 18.404 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.025 3.975 13 N -0.358 5.358 14 C 0.343 3.657 15 O -0.474 6.474 16 C -0.251 4.251 17 C -0.069 4.069 18 C -0.205 4.205 19 C -0.062 4.062 20 C -0.229 4.229 21 C 0.143 3.857 22 N -0.407 5.407 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.244 0.756 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.177 0.823 36 H 0.166 0.834 37 H 0.234 0.766 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.916 3.086 18.251 18.609 hybrid contribution 0.462 -0.658 -1.345 1.567 sum -1.454 2.428 16.906 17.141 Atomic orbital electron populations 1.21671 0.97134 0.98650 1.00360 1.18363 0.93258 0.93050 0.90318 1.21670 0.97931 0.97861 1.00350 1.21228 1.31881 1.12229 0.91539 0.93739 1.25450 0.95101 0.95583 1.00943 1.69897 1.36881 1.23227 1.23698 0.85811 0.78610 0.78796 0.79543 1.20287 1.20736 1.20272 1.21285 0.97022 0.95036 0.84137 1.46018 1.52803 1.31783 1.05185 1.18674 0.79580 0.83425 0.84004 1.90489 1.41432 1.28526 1.86966 1.19574 1.08366 1.05338 0.91784 1.21322 0.93076 0.92233 1.00298 1.21189 1.04395 1.03132 0.91818 1.21509 0.92640 0.93657 0.98403 1.21058 1.04619 0.99913 0.97325 1.18019 0.87836 0.87520 0.92365 1.42864 1.41281 1.34888 1.21699 0.94656 0.91701 0.96350 0.96310 0.91710 0.94674 0.92979 0.94239 0.94370 0.75617 0.85296 0.83287 0.82320 0.83359 0.76558 0.76021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 4 C -0.53 -28.37 8.01 25.60 0.21 -28.17 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.54 5.15 84.66 0.44 1.98 16 7 N -0.90 -48.09 9.35 21.45 0.20 -47.89 16 8 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.56 4.50 86.38 0.39 6.95 16 13 N -0.71 -26.16 4.91 -466.35 -2.29 -28.45 16 14 C 0.55 20.39 7.74 86.67 0.67 21.06 16 15 O -0.59 -24.73 13.82 -4.03 -0.06 -24.78 16 16 C -0.24 -7.21 5.89 -19.98 -0.12 -7.33 16 17 C -0.05 -1.21 9.52 22.52 0.21 -1.00 16 18 C -0.19 -3.41 10.02 22.24 0.22 -3.19 16 19 C -0.04 -0.69 10.03 22.29 0.22 -0.47 16 20 C -0.21 -3.91 9.92 22.38 0.22 -3.69 16 21 C 0.25 6.56 6.76 38.71 0.26 6.82 16 22 N -0.86 -21.41 8.47 -50.94 -0.43 -21.84 16 23 H 0.03 1.34 6.86 -2.38 -0.02 1.33 16 24 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 28 H 0.03 1.34 6.86 -2.39 -0.02 1.32 16 29 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.41 13.34 4.23 -92.71 -0.39 12.95 16 33 H 0.13 2.88 6.45 -2.91 -0.02 2.86 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.40 7.32 8.91 -92.70 -0.83 6.49 16 38 H 0.40 12.04 6.13 -92.71 -0.57 11.47 16 Total: -1.00 -62.04 305.98 2.63 -59.41 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: -0.69 Total: 33.12 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.86 Total: -14.40 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -2.52 Total: -98.18 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.06 Total: -24.78 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.04 2.63 -59.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315714780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.629 kcal (2) G-P(sol) polarization free energy of solvation -62.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds