Wall clock time and date at job start Mon Mar 30 2020 04:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 C 1.52997 * 109.47284 * 125.00032 * 3 2 1 5 5 H 1.09001 * 109.47235 * 305.00899 * 4 3 2 6 6 C 1.52999 * 109.47374 * 185.00233 * 4 3 2 7 7 O 1.42901 * 109.47132 * 305.00451 * 6 4 3 8 8 N 1.46506 * 109.46890 * 65.00479 * 4 3 2 9 9 C 1.39846 * 119.99942 * 205.00343 * 8 4 3 10 10 C 1.39606 * 119.84080 * 359.72038 * 9 8 4 11 11 C 1.38063 * 120.54672 * 179.76291 * 10 9 8 12 12 C 1.38732 * 120.22332 * 0.51575 * 11 10 9 13 13 N 1.38859 * 120.16474 * 179.72026 * 12 11 10 14 14 C 1.41566 * 119.67189 * 359.74451 * 12 11 10 15 15 C 1.41027 * 120.26491 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00548 * 25.57084 * 15 14 12 17 17 C 1.39894 * 120.00008 * 205.56832 * 15 14 12 18 18 N 1.30901 * 119.99714 * 15.35189 * 17 15 14 19 19 Si 1.86788 * 120.00102 * 195.34825 * 17 15 14 20 20 H 1.48497 * 109.47221 * 94.97032 * 19 17 15 21 21 H 1.48505 * 109.47120 * 214.96881 * 19 17 15 22 22 H 1.48504 * 109.47466 * 334.97123 * 19 17 15 23 23 C 1.38008 * 119.84259 * 180.02562 * 9 8 4 24 24 H 1.07996 * 120.00327 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99772 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99839 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46880 * 5.00453 * 3 2 1 28 28 H 1.08998 * 109.47653 * 245.00373 * 3 2 1 29 29 H 1.09002 * 109.47158 * 184.99971 * 6 4 3 30 30 H 1.09002 * 109.46784 * 65.00574 * 6 4 3 31 31 H 0.96700 * 113.99733 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00056 * 24.99814 * 8 4 3 33 33 H 1.07999 * 119.72546 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.88386 * 180.26042 * 11 10 9 35 35 H 0.97002 * 120.00019 * 180.02562 * 13 12 11 36 36 H 0.97006 * 120.00010 * 0.02562 * 13 12 11 37 37 H 0.97000 * 120.00074 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.11224 * 359.95271 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4884 1.1467 2.1060 6 6 3.7092 2.7045 1.2552 7 8 4.3282 2.9990 0.0014 8 7 4.0547 0.2969 1.0000 9 6 4.7152 -0.2365 2.1113 10 6 4.4045 0.2250 3.3917 11 6 5.0441 -0.2948 4.4993 12 6 6.0127 -1.2766 4.3497 13 7 6.6594 -1.7944 5.4641 14 6 6.3390 -1.7476 3.0552 15 6 7.3221 -2.7450 2.8886 16 1 7.5327 -3.4352 3.6920 17 6 8.0245 -2.8402 1.6825 18 7 7.9986 -1.8473 0.8299 19 14 8.9994 -4.3841 1.2889 20 1 8.1670 -5.2992 0.4674 21 1 10.2242 -4.0170 0.5336 22 1 9.3822 -5.0636 2.5526 23 6 5.6756 -1.2121 1.9364 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4027 -0.9314 29 1 4.4650 2.6962 2.0406 30 1 2.9614 3.4654 1.4788 31 1 4.7765 3.8554 -0.0244 32 1 4.2716 -0.0193 0.1090 33 1 3.6546 0.9920 3.5171 34 1 4.7924 0.0671 5.4852 35 1 7.3365 -2.4806 5.3567 36 1 6.4339 -1.4700 6.3500 37 1 8.4859 -1.9132 -0.0063 38 1 5.9163 -1.5638 0.9440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320270818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:19 Heat of formation + Delta-G solvation = -10.418649 kcal Electronic energy + Delta-G solvation = -19579.398860 eV Core-core repulsion = 16614.585013 eV Total energy + Delta-G solvation = -2964.813847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.42111 -37.15562 -35.31959 -34.04661 -33.42055 -31.71144 -29.49100 -29.16031 -25.92936 -25.78880 -24.64646 -21.52316 -20.57281 -19.74762 -19.28333 -17.45437 -16.81688 -16.13232 -15.44533 -15.19594 -14.98804 -14.58587 -14.45545 -14.19528 -13.47704 -12.99551 -12.88584 -12.41927 -12.00760 -11.93219 -11.63308 -11.50162 -11.20074 -11.09728 -11.07211 -10.96750 -10.74106 -10.31726 -9.84632 -9.82299 -9.62998 -9.27345 -9.10391 -9.03616 -7.71302 -7.19137 -6.57461 -5.48576 -4.03943 2.45873 2.92931 3.15563 3.18055 3.33518 3.51632 4.05558 4.40092 4.64799 4.84849 5.01511 5.30155 5.37786 5.44866 5.61054 5.64643 5.67925 5.92654 5.94921 6.08537 6.22459 6.33684 6.40380 6.65065 6.81947 6.93843 7.15772 7.18861 7.35864 7.53293 7.73902 7.88235 7.91716 8.04900 8.17327 8.49556 8.80307 8.95180 8.99207 9.04142 9.28980 9.37575 10.40572 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.005726 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.310259 B = 4889.133508 C = 5354.221445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.134 4.134 3 C -0.096 4.096 4 C 0.171 3.829 5 H 0.084 0.916 6 C 0.058 3.942 7 O -0.565 6.565 8 N -0.746 5.746 9 C 0.181 3.819 10 C -0.260 4.260 11 C -0.152 4.152 12 C 0.083 3.917 13 N -0.889 5.889 14 C 0.095 3.905 15 C -0.464 4.464 16 H 0.070 0.930 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.201 4.201 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.370 0.630 32 H 0.390 0.610 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.388 0.612 36 H 0.373 0.627 37 H 0.274 0.726 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.794 5.693 -0.915 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.152 4.152 3 C -0.134 4.134 4 C 0.063 3.937 5 H 0.102 0.898 6 C -0.022 4.022 7 O -0.369 6.369 8 N -0.380 5.380 9 C 0.082 3.918 10 C -0.284 4.284 11 C -0.177 4.177 12 C -0.018 4.018 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.495 4.495 16 H 0.089 0.911 17 C -0.140 4.140 18 N -0.425 5.425 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.225 4.225 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.215 0.785 32 H 0.223 0.777 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.216 0.784 36 H 0.198 0.802 37 H 0.085 0.915 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.082 5.308 -1.277 9.753 hybrid contribution 1.001 -0.247 -0.023 1.031 sum -7.081 5.061 -1.300 8.801 Atomic orbital electron populations 1.23735 0.95926 1.01282 1.03959 1.23048 0.95784 0.99101 0.97289 1.20936 0.97600 0.95044 0.99801 1.20631 0.88650 0.86442 0.97954 0.89830 1.22883 0.96141 0.97048 0.86139 1.86493 1.74268 1.41388 1.34723 1.44283 1.43435 1.43561 1.06725 1.17531 0.93589 0.94702 0.85950 1.19603 1.08788 1.08864 0.91182 1.19687 1.00702 1.01053 0.96238 1.17855 0.97902 0.98068 0.87968 1.41806 1.47735 1.48594 1.05077 1.16984 0.92368 0.93003 0.88653 1.19149 1.17500 1.13711 0.99114 0.91150 1.25751 0.96048 0.96348 0.95880 1.69884 1.35076 1.29041 1.08535 0.86410 0.79105 0.82514 0.79203 1.19723 1.20615 1.18950 1.20523 0.99790 1.02671 0.99543 0.89066 0.88876 0.86999 0.91271 0.89948 0.92793 0.94525 0.78455 0.77693 0.89876 0.89923 0.78374 0.80170 0.91479 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.55 14.32 29.02 0.42 -2.14 16 2 C -0.13 -1.84 9.25 -36.03 -0.33 -2.17 16 3 C -0.10 -1.31 4.92 -27.89 -0.14 -1.44 16 4 C 0.17 2.71 2.05 -67.93 -0.14 2.57 16 5 H 0.08 1.37 6.48 -51.93 -0.34 1.03 16 6 C 0.06 0.85 6.77 37.16 0.25 1.10 16 7 O -0.56 -8.30 12.83 -35.23 -0.45 -8.75 16 8 N -0.75 -14.46 4.89 -52.17 -0.26 -14.72 16 9 C 0.18 4.20 6.63 -83.78 -0.56 3.65 16 10 C -0.26 -5.87 8.83 -39.14 -0.35 -6.21 16 11 C -0.15 -3.50 9.86 -39.46 -0.39 -3.89 16 12 C 0.08 2.02 6.79 -83.23 -0.56 1.46 16 13 N -0.89 -18.39 8.98 32.75 0.29 -18.10 16 14 C 0.10 2.54 5.58 -106.66 -0.60 1.95 16 15 C -0.46 -12.28 8.50 -37.91 -0.32 -12.60 16 16 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 17 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 18 N -0.80 -21.16 10.88 55.55 0.60 -20.55 16 19 Si 0.90 19.18 29.59 -169.99 -5.03 14.15 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.20 -5.25 8.50 -38.75 -0.33 -5.58 16 24 H 0.09 0.97 7.84 -52.49 -0.41 0.56 16 25 H 0.09 1.04 8.06 -52.48 -0.42 0.61 16 26 H 0.11 1.69 8.03 -52.49 -0.42 1.27 16 27 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 28 H 0.08 1.18 7.73 -51.93 -0.40 0.78 16 29 H 0.05 0.90 7.77 -51.93 -0.40 0.50 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.37 3.83 9.12 45.56 0.42 4.24 16 32 H 0.39 7.61 8.61 -40.82 -0.35 7.26 16 33 H 0.08 1.68 6.15 -52.49 -0.32 1.36 16 34 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.39 7.90 7.04 -40.82 -0.29 7.61 16 36 H 0.37 6.53 8.83 -40.82 -0.36 6.17 16 37 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 38 H 0.12 3.25 6.14 -52.48 -0.32 2.93 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -29.26 316.42 -7.56 -36.82 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -4.36 Total: 27.86 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -3.13 Total: -21.48 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.64 Total: -53.37 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.45 Total: -8.75 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.26 -7.56 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320270818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.404 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds