Wall clock time and date at job start Mon Mar 30 2020 04:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 C 1.52997 * 109.47284 * 125.00032 * 3 2 1 5 5 H 1.09001 * 109.47235 * 305.00899 * 4 3 2 6 6 C 1.52999 * 109.47374 * 185.00233 * 4 3 2 7 7 O 1.42901 * 109.47132 * 305.00451 * 6 4 3 8 8 N 1.46506 * 109.46890 * 65.00479 * 4 3 2 9 9 C 1.39846 * 119.99942 * 205.00343 * 8 4 3 10 10 C 1.39606 * 119.84080 * 359.72038 * 9 8 4 11 11 C 1.38063 * 120.54672 * 179.76291 * 10 9 8 12 12 C 1.38732 * 120.22332 * 0.51575 * 11 10 9 13 13 N 1.38859 * 120.16474 * 179.72026 * 12 11 10 14 14 C 1.41566 * 119.67189 * 359.74451 * 12 11 10 15 15 C 1.41027 * 120.26491 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00548 * 25.57084 * 15 14 12 17 17 C 1.39894 * 120.00008 * 205.56832 * 15 14 12 18 18 N 1.30901 * 119.99714 * 15.35189 * 17 15 14 19 19 Si 1.86788 * 120.00102 * 195.34825 * 17 15 14 20 20 H 1.48497 * 109.47221 * 94.97032 * 19 17 15 21 21 H 1.48505 * 109.47120 * 214.96881 * 19 17 15 22 22 H 1.48504 * 109.47466 * 334.97123 * 19 17 15 23 23 C 1.38008 * 119.84259 * 180.02562 * 9 8 4 24 24 H 1.07996 * 120.00327 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99772 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99839 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46880 * 5.00453 * 3 2 1 28 28 H 1.08998 * 109.47653 * 245.00373 * 3 2 1 29 29 H 1.09002 * 109.47158 * 184.99971 * 6 4 3 30 30 H 1.09002 * 109.46784 * 65.00574 * 6 4 3 31 31 H 0.96700 * 113.99733 * 180.02562 * 7 6 4 32 32 H 0.96999 * 120.00056 * 24.99814 * 8 4 3 33 33 H 1.07999 * 119.72546 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.88386 * 180.26042 * 11 10 9 35 35 H 0.97002 * 120.00019 * 180.02562 * 13 12 11 36 36 H 0.97006 * 120.00010 * 0.02562 * 13 12 11 37 37 H 0.97000 * 120.00074 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.11224 * 359.95271 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4884 1.1467 2.1060 6 6 3.7092 2.7045 1.2552 7 8 4.3282 2.9990 0.0014 8 7 4.0547 0.2969 1.0000 9 6 4.7152 -0.2365 2.1113 10 6 4.4045 0.2250 3.3917 11 6 5.0441 -0.2948 4.4993 12 6 6.0127 -1.2766 4.3497 13 7 6.6594 -1.7944 5.4641 14 6 6.3390 -1.7476 3.0552 15 6 7.3221 -2.7450 2.8886 16 1 7.5327 -3.4352 3.6920 17 6 8.0245 -2.8402 1.6825 18 7 7.9986 -1.8473 0.8299 19 14 8.9994 -4.3841 1.2889 20 1 8.1670 -5.2992 0.4674 21 1 10.2242 -4.0170 0.5336 22 1 9.3822 -5.0636 2.5526 23 6 5.6756 -1.2121 1.9364 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4027 -0.9314 29 1 4.4650 2.6962 2.0406 30 1 2.9614 3.4654 1.4788 31 1 4.7765 3.8554 -0.0244 32 1 4.2716 -0.0193 0.1090 33 1 3.6546 0.9920 3.5171 34 1 4.7924 0.0671 5.4852 35 1 7.3365 -2.4806 5.3567 36 1 6.4339 -1.4700 6.3500 37 1 8.4859 -1.9132 -0.0063 38 1 5.9163 -1.5638 0.9440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320270818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:18 Heat of formation + Delta-G solvation = -31.373330 kcal Electronic energy + Delta-G solvation = -19580.307523 eV Core-core repulsion = 16614.585013 eV Total energy + Delta-G solvation = -2965.722510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99640 -38.64444 -36.56310 -35.49592 -35.25803 -33.19169 -31.30221 -30.67729 -27.57782 -27.08988 -26.38118 -23.22661 -22.10328 -21.25112 -20.53027 -19.00075 -18.30463 -17.78627 -17.20624 -16.69819 -16.51143 -16.18271 -15.74764 -15.41196 -14.77088 -14.60680 -14.19645 -14.02481 -13.73664 -13.68971 -13.20424 -13.01859 -12.75992 -12.71557 -12.51130 -12.32824 -12.01803 -11.92346 -11.67384 -11.28034 -11.14740 -10.93886 -10.82228 -10.14857 -9.34563 -9.11556 -8.47558 -7.24814 -5.98783 1.13766 1.40620 1.44716 1.52364 1.53277 1.68479 2.27374 2.91483 2.98491 3.55072 3.79340 3.92091 4.01498 4.17294 4.29388 4.47500 4.53125 4.59778 4.66379 4.84378 4.88345 4.94875 5.14898 5.21612 5.25520 5.38911 5.47314 5.69682 5.80269 5.90937 5.94333 6.09636 6.20657 6.33267 6.59665 6.95405 6.99697 7.10470 7.18949 7.29774 7.50465 7.69185 8.52344 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.005726 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.310259 B = 4889.133508 C = 5354.221445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C -0.083 4.083 4 C 0.164 3.836 5 H 0.083 0.917 6 C 0.062 3.938 7 O -0.582 6.582 8 N -0.743 5.743 9 C 0.180 3.820 10 C -0.259 4.259 11 C -0.157 4.157 12 C 0.066 3.934 13 N -0.880 5.880 14 C 0.059 3.941 15 C -0.492 4.492 16 H 0.073 0.927 17 C 0.032 3.968 18 N -0.833 5.833 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.227 4.227 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.389 0.611 32 H 0.385 0.615 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.389 0.611 36 H 0.390 0.610 37 H 0.278 0.722 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 6.590 -0.454 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C -0.120 4.120 4 C 0.058 3.942 5 H 0.101 0.899 6 C -0.017 4.017 7 O -0.389 6.389 8 N -0.375 5.375 9 C 0.079 3.921 10 C -0.283 4.283 11 C -0.181 4.181 12 C -0.035 4.035 13 N -0.424 5.424 14 C 0.054 3.946 15 C -0.523 4.523 16 H 0.091 0.909 17 C -0.181 4.181 18 N -0.461 5.461 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.252 4.252 24 H 0.131 0.869 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.237 0.763 32 H 0.218 0.782 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.217 0.783 36 H 0.218 0.782 37 H 0.088 0.912 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.443 6.242 -0.797 11.347 hybrid contribution 1.278 -0.419 -0.160 1.354 sum -8.166 5.822 -0.957 10.074 Atomic orbital electron populations 1.23965 0.95224 1.02696 1.00812 1.22938 0.96514 0.98337 1.00213 1.20817 0.97257 0.95842 0.98087 1.20900 0.88252 0.86017 0.99043 0.89949 1.22771 0.96260 0.97212 0.85445 1.86449 1.74697 1.43108 1.34615 1.44374 1.43600 1.44059 1.05472 1.17619 0.92989 0.93930 0.87542 1.19924 1.08826 1.08877 0.90654 1.20055 0.99985 1.00372 0.97729 1.18030 0.98678 0.98656 0.88183 1.41675 1.47301 1.48332 1.05063 1.17370 0.93206 0.93982 0.90010 1.19404 1.18348 1.14447 1.00092 0.90870 1.26571 0.96938 0.99163 0.95403 1.69980 1.36200 1.30903 1.09037 0.85308 0.77549 0.78366 0.79087 1.19573 1.20016 1.18085 1.20482 1.01636 1.04537 0.98571 0.86898 0.88146 0.89404 0.88619 0.91026 0.95184 0.90826 0.76278 0.78236 0.87294 0.87141 0.78310 0.78235 0.91216 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 14.32 67.78 0.97 -3.12 16 2 C -0.16 -4.26 9.25 25.65 0.24 -4.02 16 3 C -0.08 -2.09 4.92 29.85 0.15 -1.95 16 4 C 0.16 4.97 2.05 44.99 0.09 5.07 16 5 H 0.08 2.53 6.48 -2.39 -0.02 2.51 16 6 C 0.06 1.71 6.77 71.98 0.49 2.20 16 7 O -0.58 -16.19 12.83 -148.98 -1.91 -18.10 16 8 N -0.74 -29.14 4.89 -318.96 -1.56 -30.70 16 9 C 0.18 8.49 6.63 38.14 0.25 8.75 16 10 C -0.26 -11.44 8.83 22.56 0.20 -11.24 16 11 C -0.16 -7.05 9.86 22.35 0.22 -6.83 16 12 C 0.07 3.25 6.79 38.97 0.26 3.52 16 13 N -0.88 -35.93 8.98 -50.31 -0.45 -36.38 16 14 C 0.06 3.28 5.58 -21.18 -0.12 3.16 16 15 C -0.49 -26.83 8.50 23.36 0.20 -26.63 16 16 H 0.07 3.78 6.67 -2.91 -0.02 3.77 16 17 C 0.03 1.66 5.18 85.23 0.44 2.10 16 18 N -0.83 -45.88 10.88 21.82 0.24 -45.64 16 19 Si 0.97 40.16 29.59 68.60 2.03 42.19 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 23 C -0.23 -12.40 8.50 22.81 0.19 -12.21 16 24 H 0.11 1.95 7.84 -2.91 -0.02 1.93 16 25 H 0.10 2.00 8.06 -2.91 -0.02 1.98 16 26 H 0.09 2.72 8.03 -2.91 -0.02 2.69 16 27 H 0.10 1.93 7.79 -2.39 -0.02 1.91 16 28 H 0.07 1.98 7.73 -2.39 -0.02 1.96 16 29 H 0.03 0.96 7.77 -2.39 -0.02 0.94 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.39 7.35 9.12 -74.06 -0.68 6.67 16 32 H 0.39 15.62 8.61 -92.71 -0.80 14.82 16 33 H 0.11 4.18 6.15 -2.91 -0.02 4.16 16 34 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.39 15.81 7.04 -92.71 -0.65 15.16 16 36 H 0.39 13.10 8.83 -92.70 -0.82 12.28 16 37 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 38 H 0.09 5.53 6.14 -2.91 -0.02 5.51 16 Total: -1.00 -64.59 316.42 0.10 -64.49 By element: Atomic # 1 Polarization: 67.18 SS G_CDS: -1.83 Total: 65.35 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 3.59 Total: -41.21 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -1.78 Total: -112.72 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.91 Total: -18.10 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -64.59 0.10 -64.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320270818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.116 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds