Wall clock time and date at job start Mon Mar 30 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47017 * 2 1 4 4 C 1.52996 * 109.47547 * 239.99351 * 2 1 3 5 5 C 1.50703 * 109.47046 * 65.00113 * 4 2 1 6 6 O 1.21290 * 119.99977 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00516 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00694 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.46342 * 324.99575 * 8 7 5 10 10 C 1.52998 * 109.47185 * 84.99510 * 8 7 5 11 11 C 1.50701 * 109.47260 * 204.99997 * 8 7 5 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48494 * 109.47230 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47301 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47430 * 239.99516 * 15 13 11 19 19 C 1.50698 * 109.46804 * 119.99254 * 2 1 3 20 20 C 1.38681 * 120.41877 * 239.72408 * 19 2 1 21 21 C 1.38625 * 118.41751 * 179.78546 * 20 19 2 22 22 C 1.38226 * 119.16601 * 0.51628 * 21 20 19 23 23 N 1.31861 * 120.75944 * 359.72102 * 22 21 20 24 24 C 1.31882 * 121.72678 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46960 * 60.01067 * 1 2 3 26 26 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47397 * 300.00377 * 1 2 3 28 28 H 1.09003 * 109.47380 * 305.00472 * 4 2 1 29 29 H 1.08994 * 109.47427 * 184.99424 * 4 2 1 30 30 H 0.97006 * 119.99365 * 359.97438 * 7 5 4 31 31 H 1.08998 * 109.47156 * 60.00179 * 10 8 7 32 32 H 1.09004 * 109.46783 * 180.02562 * 10 8 7 33 33 H 1.09005 * 109.46870 * 300.00240 * 10 8 7 34 34 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.78847 * 0.02562 * 20 19 2 36 36 H 1.08004 * 120.41764 * 180.21724 * 21 20 19 37 37 H 1.08000 * 119.62356 * 179.70475 * 22 21 20 38 38 H 1.08004 * 119.61928 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6415 0.0568 -2.4766 6 8 1.0110 1.0868 -2.3634 7 7 1.9846 -0.3921 -3.7001 8 6 1.5976 0.3646 -4.8933 9 1 0.6217 0.8228 -4.7322 10 6 2.6351 1.4561 -5.1637 11 6 1.5267 -0.5655 -6.0769 12 1 1.7481 -1.6152 -5.9528 13 6 1.1851 -0.0751 -7.3194 14 7 0.9157 1.2033 -7.4706 15 14 1.1047 -1.2266 -8.7881 16 1 1.4498 -2.6047 -8.3561 17 1 -0.2688 -1.2136 -9.3527 18 1 2.0696 -0.7766 -9.8233 19 6 2.0323 -0.7102 1.2306 20 6 2.8347 -0.0462 2.1462 21 6 3.2697 -0.7381 3.2659 22 6 2.9008 -2.0606 3.4260 23 7 2.1403 -2.6616 2.5320 24 6 1.7041 -2.0332 1.4577 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6055 -1.7199 -1.2950 29 1 3.1264 -0.7995 -1.2055 30 1 2.4886 -1.2161 -3.7906 31 1 3.6109 0.9979 -5.3248 32 1 2.3469 2.0194 -6.0513 33 1 2.6864 2.1288 -4.3076 34 1 0.6757 1.5483 -8.3448 35 1 3.1109 0.9865 1.9925 36 1 3.8931 -0.2514 4.0014 37 1 3.2395 -2.6080 4.2932 38 1 1.0826 -2.5584 0.7476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359930055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:32 Heat of formation + Delta-G solvation = -22.107902 kcal Electronic energy + Delta-G solvation = -19121.668162 eV Core-core repulsion = 16156.347431 eV Total energy + Delta-G solvation = -2965.320731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46999 -38.98689 -35.68700 -34.54350 -32.40774 -32.32266 -30.28578 -29.15962 -27.13841 -25.25727 -24.23024 -23.61280 -21.55578 -20.20084 -19.31873 -17.42616 -17.05320 -16.36182 -15.87203 -15.19469 -14.97535 -14.78861 -14.30396 -14.11752 -13.71954 -13.20826 -13.18030 -12.90247 -12.73366 -12.42664 -11.94546 -11.71608 -11.25016 -11.16214 -11.06990 -10.91928 -10.84439 -10.65555 -10.29163 -10.24931 -9.91783 -9.54044 -9.11355 -9.04724 -8.89069 -8.55781 -7.89658 -6.13382 -4.22595 0.97477 1.15140 3.22884 3.30811 3.33417 3.40307 3.66970 4.05247 4.30703 4.39046 4.65039 4.75012 4.86378 4.90958 5.05859 5.17636 5.19300 5.35570 5.48740 5.65665 5.73712 5.75980 5.82464 5.94492 6.03215 6.16940 6.38706 6.54716 6.61020 6.81736 6.95872 7.14685 7.46768 7.56076 7.69110 7.84029 7.91043 8.14594 8.67417 8.77860 9.13950 9.45413 10.92574 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039714 B = 0.003661 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.867576 B = 7645.461693 C = 7903.455216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 H 0.088 0.912 4 C -0.137 4.137 5 C 0.501 3.499 6 O -0.554 6.554 7 N -0.710 5.710 8 C 0.263 3.737 9 H 0.049 0.951 10 C -0.147 4.147 11 C -0.533 4.533 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.901 3.099 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.120 4.120 20 C -0.075 4.075 21 C -0.172 4.172 22 C 0.085 3.915 23 N -0.485 5.485 24 C 0.102 3.898 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.388 0.612 31 H 0.025 0.975 32 H 0.090 0.910 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 -4.330 17.526 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.050 4.050 3 H 0.106 0.894 4 C -0.177 4.177 5 C 0.286 3.714 6 O -0.433 6.433 7 N -0.358 5.358 8 C 0.162 3.838 9 H 0.066 0.934 10 C -0.206 4.206 11 C -0.572 4.572 12 H 0.080 0.920 13 C -0.138 4.138 14 N -0.521 5.521 15 Si 0.729 3.271 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.192 4.192 22 C -0.072 4.072 23 N -0.193 5.193 24 C -0.055 4.055 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.220 0.780 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.690 -4.333 17.556 18.456 hybrid contribution 0.589 -0.087 -0.988 1.154 sum 4.278 -4.420 16.568 17.673 Atomic orbital electron populations 1.21973 0.93374 1.01758 1.03523 1.19821 0.96973 0.99128 0.89057 0.89373 1.21777 1.02454 1.00262 0.93200 1.20362 0.80174 0.85938 0.84878 1.90619 1.40996 1.25029 1.86682 1.46555 1.55505 1.26977 1.06717 1.18733 0.94911 0.89869 0.80311 0.93366 1.22077 0.98210 0.99132 1.01135 1.21271 1.48343 0.94700 0.92860 0.92041 1.24893 0.94753 0.95252 0.98857 1.69909 1.45825 1.12486 1.23906 0.86400 0.77762 0.80756 0.82218 1.19725 1.20861 1.20889 1.21054 0.97864 0.95717 0.97544 1.21585 0.94987 1.00349 0.93130 1.22133 1.01884 0.96264 0.98885 1.22728 0.94423 0.92405 0.97598 1.67695 1.10071 1.38855 1.02654 1.22670 0.96908 0.91573 0.94333 0.89386 0.93169 0.93151 0.89274 0.89522 0.77954 0.95556 0.89170 0.96691 0.92638 0.84798 0.84959 0.83057 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.75 37.16 0.33 -1.65 16 2 C -0.03 -0.38 2.22 -91.77 -0.20 -0.59 16 3 H 0.09 1.20 7.74 -51.93 -0.40 0.80 16 4 C -0.14 -1.83 4.92 -27.88 -0.14 -1.97 16 5 C 0.50 9.41 7.51 -10.99 -0.08 9.33 16 6 O -0.55 -12.35 13.63 5.55 0.08 -12.27 16 7 N -0.71 -14.39 5.07 -54.93 -0.28 -14.67 16 8 C 0.26 6.63 2.56 -69.08 -0.18 6.45 16 9 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 10 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 11 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 14 N -0.88 -24.82 11.31 55.43 0.63 -24.19 16 15 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.12 -1.35 4.79 -104.48 -0.50 -1.85 16 20 C -0.07 -0.75 9.81 -39.27 -0.39 -1.13 16 21 C -0.17 -1.52 10.11 -39.44 -0.40 -1.92 16 22 C 0.09 0.84 11.18 -17.54 -0.20 0.64 16 23 N -0.48 -5.86 10.36 -13.25 -0.14 -5.99 16 24 C 0.10 1.18 9.95 -17.55 -0.17 1.01 16 25 H 0.09 1.44 5.95 -51.93 -0.31 1.13 16 26 H 0.05 0.60 7.41 -51.93 -0.39 0.21 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.04 7.60 -51.93 -0.39 0.65 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.39 6.82 8.54 -40.82 -0.35 6.47 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 35 H 0.13 1.13 8.00 -52.49 -0.42 0.71 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.15 1.59 7.19 -52.48 -0.38 1.22 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -30.82 317.13 -7.36 -38.18 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.42 Total: 6.29 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.98 Total: -7.67 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.21 Total: -44.85 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.82 -7.36 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359930055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.071 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds