Wall clock time and date at job start Mon Mar 30 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47017 * 2 1 4 4 C 1.52996 * 109.47547 * 239.99351 * 2 1 3 5 5 C 1.50703 * 109.47046 * 65.00113 * 4 2 1 6 6 O 1.21290 * 119.99977 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00516 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00694 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.46342 * 324.99575 * 8 7 5 10 10 C 1.52998 * 109.47185 * 84.99510 * 8 7 5 11 11 C 1.50701 * 109.47260 * 204.99997 * 8 7 5 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48494 * 109.47230 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47301 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47430 * 239.99516 * 15 13 11 19 19 C 1.50698 * 109.46804 * 119.99254 * 2 1 3 20 20 C 1.38681 * 120.41877 * 239.72408 * 19 2 1 21 21 C 1.38625 * 118.41751 * 179.78546 * 20 19 2 22 22 C 1.38226 * 119.16601 * 0.51628 * 21 20 19 23 23 N 1.31861 * 120.75944 * 359.72102 * 22 21 20 24 24 C 1.31882 * 121.72678 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46960 * 60.01067 * 1 2 3 26 26 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47397 * 300.00377 * 1 2 3 28 28 H 1.09003 * 109.47380 * 305.00472 * 4 2 1 29 29 H 1.08994 * 109.47427 * 184.99424 * 4 2 1 30 30 H 0.97006 * 119.99365 * 359.97438 * 7 5 4 31 31 H 1.08998 * 109.47156 * 60.00179 * 10 8 7 32 32 H 1.09004 * 109.46783 * 180.02562 * 10 8 7 33 33 H 1.09005 * 109.46870 * 300.00240 * 10 8 7 34 34 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.78847 * 0.02562 * 20 19 2 36 36 H 1.08004 * 120.41764 * 180.21724 * 21 20 19 37 37 H 1.08000 * 119.62356 * 179.70475 * 22 21 20 38 38 H 1.08004 * 119.61928 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6415 0.0568 -2.4766 6 8 1.0110 1.0868 -2.3634 7 7 1.9846 -0.3921 -3.7001 8 6 1.5976 0.3646 -4.8933 9 1 0.6217 0.8228 -4.7322 10 6 2.6351 1.4561 -5.1637 11 6 1.5267 -0.5655 -6.0769 12 1 1.7481 -1.6152 -5.9528 13 6 1.1851 -0.0751 -7.3194 14 7 0.9157 1.2033 -7.4706 15 14 1.1047 -1.2266 -8.7881 16 1 1.4498 -2.6047 -8.3561 17 1 -0.2688 -1.2136 -9.3527 18 1 2.0696 -0.7766 -9.8233 19 6 2.0323 -0.7102 1.2306 20 6 2.8347 -0.0462 2.1462 21 6 3.2697 -0.7381 3.2659 22 6 2.9008 -2.0606 3.4260 23 7 2.1403 -2.6616 2.5320 24 6 1.7041 -2.0332 1.4577 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6055 -1.7199 -1.2950 29 1 3.1264 -0.7995 -1.2055 30 1 2.4886 -1.2161 -3.7906 31 1 3.6109 0.9979 -5.3248 32 1 2.3469 2.0194 -6.0513 33 1 2.6864 2.1288 -4.3076 34 1 0.6757 1.5483 -8.3448 35 1 3.1109 0.9865 1.9925 36 1 3.8931 -0.2514 4.0014 37 1 3.2395 -2.6080 4.2932 38 1 1.0826 -2.5584 0.7476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359930055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:32 Heat of formation + Delta-G solvation = -41.774542 kcal Electronic energy + Delta-G solvation = -19122.520971 eV Core-core repulsion = 16156.347431 eV Total energy + Delta-G solvation = -2966.173541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35522 -40.44449 -37.08671 -36.08096 -34.29530 -33.11227 -31.51276 -30.61395 -28.44857 -27.32347 -25.14677 -24.41678 -23.15388 -21.51940 -20.86335 -18.87823 -18.06971 -17.50821 -17.24669 -17.01027 -16.22738 -15.92359 -15.81218 -15.02599 -14.92533 -14.45930 -14.39824 -14.24597 -13.91693 -13.71059 -13.63950 -13.14132 -12.93250 -12.76957 -12.71084 -12.29818 -12.21261 -12.18519 -12.07857 -11.78232 -11.07958 -10.69798 -10.65174 -10.51424 -10.31478 -9.84474 -9.67716 -8.17394 -6.34673 0.21213 0.38914 1.44128 1.45372 1.57257 1.89677 2.36533 2.66797 2.92339 3.13102 3.55221 3.73869 3.84171 4.05082 4.11735 4.14076 4.24926 4.34958 4.51060 4.68723 4.70812 4.76890 4.83044 4.91783 4.93810 5.02924 5.11673 5.16307 5.27008 5.38391 5.45174 5.52296 5.65232 5.72292 5.83231 5.93479 6.12197 6.74483 7.02746 7.07632 7.33812 7.62858 8.88960 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039714 B = 0.003661 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.867576 B = 7645.461693 C = 7903.455216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 H 0.075 0.925 4 C -0.123 4.123 5 C 0.497 3.503 6 O -0.592 6.592 7 N -0.709 5.709 8 C 0.270 3.730 9 H -0.001 1.001 10 C -0.134 4.134 11 C -0.546 4.546 12 H 0.073 0.927 13 C 0.013 3.987 14 N -0.918 5.918 15 Si 0.972 3.028 16 H -0.260 1.260 17 H -0.284 1.284 18 H -0.279 1.279 19 C -0.127 4.127 20 C -0.081 4.081 21 C -0.165 4.165 22 C 0.079 3.921 23 N -0.510 5.510 24 C 0.092 3.908 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.404 0.596 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.013 0.987 34 H 0.265 0.735 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -6.121 18.852 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.042 4.042 3 H 0.094 0.906 4 C -0.162 4.162 5 C 0.285 3.715 6 O -0.474 6.474 7 N -0.358 5.358 8 C 0.166 3.834 9 H 0.017 0.983 10 C -0.192 4.192 11 C -0.584 4.584 12 H 0.091 0.909 13 C -0.187 4.187 14 N -0.557 5.557 15 Si 0.796 3.204 16 H -0.183 1.183 17 H -0.210 1.210 18 H -0.205 1.205 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.184 4.184 22 C -0.077 4.077 23 N -0.219 5.219 24 C -0.065 4.065 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.239 0.761 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.165 0.835 36 H 0.181 0.819 37 H 0.195 0.805 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.096 -6.156 18.908 20.528 hybrid contribution 0.151 0.515 -1.291 1.398 sum 5.247 -5.641 17.617 19.228 Atomic orbital electron populations 1.21897 0.94169 1.02155 1.02064 1.19670 0.96295 0.98615 0.89616 0.90629 1.21754 1.03941 1.00253 0.90271 1.21301 0.78832 0.85647 0.85709 1.90612 1.42480 1.27067 1.87278 1.46330 1.56092 1.27362 1.06049 1.18308 0.92697 0.90243 0.82137 0.98344 1.21896 0.98631 0.98857 0.99857 1.21606 1.48156 0.95328 0.93321 0.90905 1.25801 0.94291 0.96703 1.01871 1.70057 1.46619 1.14386 1.24604 0.85304 0.77502 0.79134 0.78432 1.18348 1.20989 1.20483 1.20829 0.99012 0.95720 0.97291 1.21858 0.94525 1.01108 0.93230 1.22454 1.01313 0.95848 0.98803 1.23258 0.93547 0.93127 0.97796 1.67717 1.11176 1.39696 1.03317 1.22766 0.97294 0.91717 0.94686 0.92959 0.91845 0.92369 0.86954 0.87239 0.76111 0.94228 0.91642 0.96836 0.92596 0.83528 0.81877 0.80506 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 8.75 71.98 0.63 -3.22 16 2 C -0.02 -0.54 2.22 -11.54 -0.03 -0.57 16 3 H 0.08 2.03 7.74 -2.39 -0.02 2.01 16 4 C -0.12 -3.09 4.92 29.85 0.15 -2.94 16 5 C 0.50 18.70 7.51 87.66 0.66 19.36 16 6 O -0.59 -27.37 13.63 -3.06 -0.04 -27.41 16 7 N -0.71 -28.65 5.07 -446.09 -2.26 -30.91 16 8 C 0.27 13.90 2.56 44.24 0.11 14.02 16 9 H 0.00 -0.08 7.58 -2.38 -0.02 -0.10 16 10 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 11 C -0.55 -28.81 8.73 25.60 0.22 -28.58 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C 0.01 0.71 5.30 84.65 0.45 1.16 16 14 N -0.92 -52.73 11.31 21.45 0.24 -52.49 16 15 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 C -0.13 -2.62 4.79 -19.77 -0.09 -2.71 16 20 C -0.08 -1.42 9.81 22.47 0.22 -1.20 16 21 C -0.16 -2.37 10.11 22.36 0.23 -2.14 16 22 C 0.08 1.32 11.18 84.69 0.95 2.27 16 23 N -0.51 -11.25 10.36 -195.84 -2.03 -13.27 16 24 C 0.09 1.95 9.95 84.67 0.84 2.79 16 25 H 0.05 1.77 5.95 -2.39 -0.01 1.76 16 26 H 0.06 1.46 7.41 -2.39 -0.02 1.45 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.11 2.36 7.60 -2.39 -0.02 2.34 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.40 13.66 8.54 -92.70 -0.79 12.87 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 3.64 6.06 -2.38 -0.01 3.63 16 33 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.15 2.13 8.00 -2.91 -0.02 2.10 16 36 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.16 3.01 7.19 -2.91 -0.02 2.99 16 Total: -1.00 -68.27 317.13 3.21 -65.06 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.27 Total: 22.93 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 5.00 Total: -7.87 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -4.05 Total: -96.67 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.04 Total: -27.41 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -68.27 3.21 -65.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359930055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.285 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds