Wall clock time and date at job start Mon Mar 30 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47186 * 2 1 4 4 C 1.37110 * 119.99663 * 262.97668 * 3 2 1 5 5 H 1.07997 * 119.99857 * 142.20972 * 4 3 2 6 6 C 1.38954 * 119.99489 * 322.21603 * 4 3 2 7 7 N 1.31409 * 119.99632 * 157.13884 * 6 4 3 8 8 Si 1.86797 * 120.00207 * 337.13157 * 6 4 3 9 9 H 1.48492 * 109.47069 * 95.21099 * 8 6 4 10 10 H 1.48500 * 109.47007 * 215.21207 * 8 6 4 11 11 H 1.48503 * 109.47050 * 335.20975 * 8 6 4 12 12 C 1.34777 * 120.00649 * 82.97673 * 3 2 1 13 13 O 1.21290 * 120.00013 * 179.97438 * 12 3 2 14 14 C 1.50702 * 119.99465 * 359.97438 * 12 3 2 15 15 C 1.53006 * 109.46714 * 179.97438 * 14 12 3 16 16 H 1.08997 * 109.47122 * 304.99962 * 15 14 12 17 17 C 1.53003 * 109.46991 * 65.00252 * 15 14 12 18 18 C 1.50695 * 109.46717 * 185.00091 * 15 14 12 19 19 C 1.38673 * 120.41528 * 119.72900 * 18 15 14 20 20 C 1.38633 * 118.42124 * 180.27488 * 19 18 15 21 21 C 1.38227 * 119.15856 * 0.02562 * 20 19 18 22 22 N 1.31858 * 120.76714 * 359.97438 * 21 20 19 23 23 C 1.31887 * 121.72183 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47543 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47100 * 300.00676 * 1 2 3 26 26 H 1.09000 * 109.47024 * 60.00056 * 1 2 3 27 27 H 1.08997 * 109.47084 * 239.99657 * 2 1 3 28 28 H 1.09007 * 109.47030 * 119.99256 * 2 1 3 29 29 H 0.97001 * 119.99896 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46725 * 60.00471 * 14 12 3 31 31 H 1.08998 * 109.47085 * 300.00124 * 14 12 3 32 32 H 1.08991 * 109.46992 * 179.97438 * 17 15 14 33 33 H 1.08998 * 109.46925 * 300.00065 * 17 15 14 34 34 H 1.08997 * 109.46956 * 59.99642 * 17 15 14 35 35 H 1.07994 * 120.79536 * 0.26472 * 19 18 15 36 36 H 1.07994 * 120.41964 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.61999 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.61580 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3837 1.9790 -1.1785 5 1 2.1621 3.0227 -1.3460 6 6 3.0390 1.2420 -2.1574 7 7 2.9965 1.6315 -3.4117 8 14 3.9805 -0.3022 -1.6903 9 1 3.1111 -1.4901 -1.8856 10 1 5.1865 -0.4251 -2.5480 11 1 4.3924 -0.2190 -0.2660 12 6 2.1084 2.0642 1.1584 13 8 2.5132 3.2076 1.1583 14 6 1.7063 1.4072 2.4536 15 6 1.9044 2.3919 3.6079 16 1 2.9327 2.7532 3.6047 17 6 0.9478 3.5741 3.4396 18 6 1.6199 1.6976 4.9147 19 6 2.6059 1.5949 5.8844 20 6 2.3010 0.9426 7.0690 21 6 1.0334 0.4194 7.2428 22 7 0.1204 0.5358 6.2986 23 6 0.3749 1.1506 5.1599 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.4542 1.1173 -4.0951 30 1 2.3232 0.5241 2.6199 31 1 0.6579 1.1136 2.4019 32 1 1.0887 4.2753 4.2620 33 1 1.1536 4.0762 2.4943 34 1 -0.0805 3.2127 3.4427 35 1 3.5881 2.0130 5.7206 36 1 3.0446 0.8437 7.8459 37 1 0.7879 -0.0905 8.1626 38 1 -0.3986 1.2266 4.4099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359964748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:36 Heat of formation + Delta-G solvation = 0.086462 kcal Electronic energy + Delta-G solvation = -19858.241653 eV Core-core repulsion = 16893.883341 eV Total energy + Delta-G solvation = -2964.358311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36691 -38.93695 -35.80965 -34.71869 -32.35635 -32.18237 -30.06214 -29.67204 -27.78830 -24.78615 -23.88390 -23.42847 -22.89187 -20.56078 -18.61328 -17.25325 -16.89548 -16.41289 -16.11708 -15.57205 -14.80524 -14.69946 -14.10232 -13.86668 -13.53836 -13.41629 -13.08572 -12.99885 -12.77368 -12.59349 -12.33217 -12.08373 -11.73720 -11.44107 -11.09859 -10.98892 -10.88523 -10.73041 -10.50751 -10.10728 -9.85970 -9.81765 -9.44359 -9.05585 -8.96469 -8.43839 -7.73716 -6.40381 -3.95927 1.07316 1.24603 3.02191 3.20816 3.25563 3.73367 3.77069 4.14077 4.31117 4.45448 4.75707 4.80386 4.93947 5.01792 5.04270 5.21421 5.37516 5.45559 5.49942 5.59930 5.73117 5.80494 5.86330 5.92793 5.96917 6.03971 6.07004 6.17793 6.23325 6.33347 6.41682 6.56128 6.65770 6.74004 6.77706 7.55388 7.92678 8.29981 8.51797 8.97922 9.33160 9.79208 10.71910 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.005212 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.071601 B = 5370.923259 C = 5506.495074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.086 3.914 3 N -0.466 5.466 4 C -0.315 4.315 5 H 0.104 0.896 6 C 0.061 3.939 7 N -0.863 5.863 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.265 1.265 12 C 0.467 3.533 13 O -0.563 6.563 14 C -0.132 4.132 15 C -0.031 4.031 16 H 0.087 0.913 17 C -0.147 4.147 18 C -0.116 4.116 19 C -0.076 4.076 20 C -0.172 4.172 21 C 0.083 3.917 22 N -0.485 5.485 23 C 0.102 3.898 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.273 0.727 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.151 0.849 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -4.840 16.536 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.038 4.038 3 N -0.188 5.188 4 C -0.442 4.442 5 H 0.122 0.878 6 C -0.144 4.144 7 N -0.500 5.500 8 Si 0.699 3.301 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.256 3.744 13 O -0.445 6.445 14 C -0.172 4.172 15 C -0.050 4.050 16 H 0.105 0.895 17 C -0.204 4.204 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.192 4.192 21 C -0.074 4.074 22 N -0.193 5.193 23 C -0.055 4.055 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.684 -4.645 16.449 17.484 hybrid contribution 1.458 -0.728 -0.059 1.630 sum -2.226 -5.373 16.389 17.391 Atomic orbital electron populations 1.22142 0.96299 1.01028 1.02629 1.21790 0.94674 0.85865 1.01463 1.43794 1.57136 1.11418 1.06437 1.19022 1.36929 0.98487 0.89732 0.87814 1.25346 0.96323 0.98048 0.94730 1.69771 1.40194 1.40271 0.99732 0.87029 0.80393 0.82976 0.79655 1.20243 1.21348 1.18902 1.20160 0.82127 0.87840 0.84319 1.90514 1.49424 1.18202 1.86329 1.21791 1.02678 0.98955 0.93813 1.19839 1.01944 0.94669 0.88587 0.89463 1.21948 0.97547 0.97126 1.03750 1.21109 0.94812 0.98672 0.97247 1.21589 0.99389 0.96401 0.92785 1.22119 0.98483 1.00093 0.98496 1.22698 0.89640 0.97255 0.97779 1.67688 1.35156 1.14856 1.01618 1.22654 0.95502 0.93261 0.94122 0.92689 0.92938 0.91466 0.90725 0.92354 0.91651 0.90301 0.89861 0.93419 0.89218 0.93411 0.84835 0.85044 0.83143 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.11 37.16 0.38 -2.30 16 2 C 0.09 1.68 4.46 -4.05 -0.02 1.67 16 3 N -0.47 -10.99 2.18 -114.81 -0.25 -11.25 16 4 C -0.31 -8.78 9.35 -14.93 -0.14 -8.92 16 5 H 0.10 3.26 7.92 -52.49 -0.42 2.84 16 6 C 0.06 1.68 5.24 -17.47 -0.09 1.59 16 7 N -0.86 -24.82 13.96 55.50 0.77 -24.04 16 8 Si 0.87 20.43 25.11 -169.99 -4.27 16.16 16 9 H -0.28 -6.01 6.67 56.52 0.38 -5.63 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -6.17 7.11 56.52 0.40 -5.76 16 12 C 0.47 10.35 7.29 -10.98 -0.08 10.27 16 13 O -0.56 -14.29 13.84 5.55 0.08 -14.21 16 14 C -0.13 -2.17 3.53 -27.88 -0.10 -2.27 16 15 C -0.03 -0.46 2.23 -91.77 -0.20 -0.66 16 16 H 0.09 1.39 7.74 -51.93 -0.40 0.99 16 17 C -0.15 -2.19 8.75 37.16 0.33 -1.87 16 18 C -0.12 -1.50 4.79 -104.48 -0.50 -2.01 16 19 C -0.08 -0.86 9.81 -39.28 -0.39 -1.25 16 20 C -0.17 -1.71 10.11 -39.44 -0.40 -2.11 16 21 C 0.08 0.90 11.18 -17.54 -0.20 0.70 16 22 N -0.48 -6.36 10.36 -13.25 -0.14 -6.50 16 23 C 0.10 1.31 9.95 -17.55 -0.17 1.14 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.78 6.38 -51.93 -0.33 0.45 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.58 3.72 -51.93 -0.19 1.38 16 28 H 0.06 0.99 6.74 -51.93 -0.35 0.64 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.08 1.22 7.42 -51.93 -0.39 0.84 16 31 H 0.08 1.21 5.81 -51.93 -0.30 0.91 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.63 5.95 -51.93 -0.31 1.32 16 34 H 0.05 0.64 7.41 -51.93 -0.38 0.25 16 35 H 0.13 1.33 8.00 -52.49 -0.42 0.91 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.15 1.80 7.19 -52.49 -0.38 1.42 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -31.58 306.27 -5.92 -37.50 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.14 Total: 3.75 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.59 Total: -6.03 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.39 Total: -41.79 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.27 Total: 16.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.58 -5.92 -37.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359964748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.585 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds