Wall clock time and date at job start Mon Mar 30 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47186 * 2 1 4 4 C 1.37110 * 119.99663 * 262.97668 * 3 2 1 5 5 H 1.07997 * 119.99857 * 142.20972 * 4 3 2 6 6 C 1.38954 * 119.99489 * 322.21603 * 4 3 2 7 7 N 1.31409 * 119.99632 * 157.13884 * 6 4 3 8 8 Si 1.86797 * 120.00207 * 337.13157 * 6 4 3 9 9 H 1.48492 * 109.47069 * 95.21099 * 8 6 4 10 10 H 1.48500 * 109.47007 * 215.21207 * 8 6 4 11 11 H 1.48503 * 109.47050 * 335.20975 * 8 6 4 12 12 C 1.34777 * 120.00649 * 82.97673 * 3 2 1 13 13 O 1.21290 * 120.00013 * 179.97438 * 12 3 2 14 14 C 1.50702 * 119.99465 * 359.97438 * 12 3 2 15 15 C 1.53006 * 109.46714 * 179.97438 * 14 12 3 16 16 H 1.08997 * 109.47122 * 304.99962 * 15 14 12 17 17 C 1.53003 * 109.46991 * 65.00252 * 15 14 12 18 18 C 1.50695 * 109.46717 * 185.00091 * 15 14 12 19 19 C 1.38673 * 120.41528 * 119.72900 * 18 15 14 20 20 C 1.38633 * 118.42124 * 180.27488 * 19 18 15 21 21 C 1.38227 * 119.15856 * 0.02562 * 20 19 18 22 22 N 1.31858 * 120.76714 * 359.97438 * 21 20 19 23 23 C 1.31887 * 121.72183 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47543 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47100 * 300.00676 * 1 2 3 26 26 H 1.09000 * 109.47024 * 60.00056 * 1 2 3 27 27 H 1.08997 * 109.47084 * 239.99657 * 2 1 3 28 28 H 1.09007 * 109.47030 * 119.99256 * 2 1 3 29 29 H 0.97001 * 119.99896 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46725 * 60.00471 * 14 12 3 31 31 H 1.08998 * 109.47085 * 300.00124 * 14 12 3 32 32 H 1.08991 * 109.46992 * 179.97438 * 17 15 14 33 33 H 1.08998 * 109.46925 * 300.00065 * 17 15 14 34 34 H 1.08997 * 109.46956 * 59.99642 * 17 15 14 35 35 H 1.07994 * 120.79536 * 0.26472 * 19 18 15 36 36 H 1.07994 * 120.41964 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.61999 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.61580 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3837 1.9790 -1.1785 5 1 2.1621 3.0227 -1.3460 6 6 3.0390 1.2420 -2.1574 7 7 2.9965 1.6315 -3.4117 8 14 3.9805 -0.3022 -1.6903 9 1 3.1111 -1.4901 -1.8856 10 1 5.1865 -0.4251 -2.5480 11 1 4.3924 -0.2190 -0.2660 12 6 2.1084 2.0642 1.1584 13 8 2.5132 3.2076 1.1583 14 6 1.7063 1.4072 2.4536 15 6 1.9044 2.3919 3.6079 16 1 2.9327 2.7532 3.6047 17 6 0.9478 3.5741 3.4396 18 6 1.6199 1.6976 4.9147 19 6 2.6059 1.5949 5.8844 20 6 2.3010 0.9426 7.0690 21 6 1.0334 0.4194 7.2428 22 7 0.1204 0.5358 6.2986 23 6 0.3749 1.1506 5.1599 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.4542 1.1173 -4.0951 30 1 2.3232 0.5241 2.6199 31 1 0.6579 1.1136 2.4019 32 1 1.0887 4.2753 4.2620 33 1 1.1536 4.0762 2.4943 34 1 -0.0805 3.2127 3.4427 35 1 3.5881 2.0130 5.7206 36 1 3.0446 0.8437 7.8459 37 1 0.7879 -0.0905 8.1626 38 1 -0.3986 1.2266 4.4099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359964748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:36 Heat of formation + Delta-G solvation = -20.309985 kcal Electronic energy + Delta-G solvation = -19859.126109 eV Core-core repulsion = 16893.883341 eV Total energy + Delta-G solvation = -2965.242768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.37303 -40.52998 -37.35198 -36.17607 -34.32395 -33.09348 -31.38836 -30.98045 -29.21390 -26.53074 -24.98483 -24.42343 -24.31490 -21.80078 -20.25847 -18.84371 -18.20032 -17.71095 -17.46893 -17.16369 -16.20866 -15.78572 -15.59875 -15.13167 -14.90177 -14.68797 -14.52194 -14.35988 -14.00733 -13.91108 -13.73867 -13.64767 -13.04211 -12.94128 -12.67308 -12.46465 -12.23908 -12.17749 -11.90985 -11.74611 -11.53463 -11.02257 -10.67908 -10.35412 -10.24734 -9.82948 -9.66645 -8.50879 -6.10934 0.22496 0.39422 1.18404 1.30971 1.42758 1.99311 2.17695 2.69874 2.91486 2.99009 3.54288 3.73890 3.83010 4.04962 4.08897 4.12314 4.14137 4.20452 4.31863 4.44502 4.49571 4.52365 4.68216 4.72726 4.84542 4.91603 4.95753 5.02621 5.05007 5.17751 5.27855 5.39237 5.42414 5.54606 5.56908 5.84061 6.07174 6.59543 6.98411 7.08124 7.35502 7.93181 8.66783 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.005212 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.071601 B = 5370.923259 C = 5506.495074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.077 3.923 3 N -0.480 5.480 4 C -0.330 4.330 5 H 0.043 0.957 6 C 0.013 3.987 7 N -0.912 5.912 8 Si 0.943 3.057 9 H -0.241 1.241 10 H -0.290 1.290 11 H -0.259 1.259 12 C 0.461 3.539 13 O -0.606 6.606 14 C -0.119 4.119 15 C -0.023 4.023 16 H 0.070 0.930 17 C -0.143 4.143 18 C -0.126 4.126 19 C -0.083 4.083 20 C -0.164 4.164 21 C 0.080 3.920 22 N -0.508 5.508 23 C 0.093 3.907 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.279 0.721 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.180 0.820 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -7.988 19.710 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.045 4.045 3 N -0.202 5.202 4 C -0.458 4.458 5 H 0.061 0.939 6 C -0.189 4.189 7 N -0.549 5.549 8 Si 0.767 3.233 9 H -0.166 1.166 10 H -0.216 1.216 11 H -0.183 1.183 12 C 0.251 3.749 13 O -0.490 6.490 14 C -0.158 4.158 15 C -0.043 4.043 16 H 0.089 0.911 17 C -0.200 4.200 18 C -0.128 4.128 19 C -0.109 4.109 20 C -0.183 4.183 21 C -0.077 4.077 22 N -0.217 5.217 23 C -0.063 4.063 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.768 -7.814 19.633 21.464 hybrid contribution 1.442 0.367 -0.969 1.776 sum -2.325 -7.447 18.664 20.228 Atomic orbital electron populations 1.22099 0.94035 1.03314 1.02026 1.22056 0.96693 0.83329 1.02450 1.43952 1.57789 1.13120 1.05382 1.18618 1.38385 0.96562 0.92224 0.93939 1.26107 0.96542 1.02117 0.94094 1.69888 1.41392 1.42633 1.01031 0.85906 0.78724 0.79485 0.79218 1.16569 1.21643 1.18287 1.21216 0.80572 0.87253 0.85827 1.90498 1.50879 1.20373 1.87271 1.21764 1.04300 0.99279 0.90495 1.19667 1.00856 0.94301 0.89430 0.91108 1.21862 0.98651 0.97484 1.01978 1.20823 0.95623 0.99777 0.96531 1.21843 0.99600 0.96362 0.93060 1.22446 0.98882 0.98528 0.98465 1.23266 0.89603 0.96626 0.98157 1.67726 1.36222 1.15588 1.02117 1.22731 0.95538 0.93505 0.94549 0.88862 0.91382 0.94313 0.92125 0.88670 0.91176 0.88299 0.87370 0.92282 0.93159 0.91810 0.83783 0.81836 0.80332 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 10.11 71.98 0.73 -4.04 16 2 C 0.08 2.84 4.46 86.38 0.39 3.22 16 3 N -0.48 -22.83 2.18 -635.54 -1.39 -24.22 16 4 C -0.33 -19.36 9.35 84.04 0.79 -18.57 16 5 H 0.04 2.93 7.92 -2.91 -0.02 2.91 16 6 C 0.01 0.75 5.24 84.93 0.45 1.20 16 7 N -0.91 -54.56 13.96 21.66 0.30 -54.26 16 8 Si 0.94 41.89 25.11 68.60 1.72 43.61 16 9 H -0.24 -9.34 6.67 99.48 0.66 -8.68 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 12 C 0.46 20.61 7.29 87.66 0.64 21.25 16 13 O -0.61 -32.30 13.84 -3.06 -0.04 -32.34 16 14 C -0.12 -3.65 3.53 29.85 0.11 -3.55 16 15 C -0.02 -0.65 2.23 -11.54 -0.03 -0.68 16 16 H 0.07 2.24 7.74 -2.39 -0.02 2.22 16 17 C -0.14 -4.24 8.75 71.98 0.63 -3.61 16 18 C -0.13 -2.93 4.79 -19.78 -0.09 -3.02 16 19 C -0.08 -1.64 9.81 22.47 0.22 -1.42 16 20 C -0.16 -2.59 10.11 22.36 0.23 -2.36 16 21 C 0.08 1.42 11.18 84.69 0.95 2.36 16 22 N -0.51 -11.73 10.36 -195.84 -2.03 -13.76 16 23 C 0.09 2.14 9.95 84.67 0.84 2.99 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 25 H 0.07 1.83 6.38 -2.38 -0.02 1.82 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 2.40 3.72 -2.39 -0.01 2.39 16 28 H 0.10 2.80 6.74 -2.38 -0.02 2.78 16 29 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.10 2.70 7.42 -2.39 -0.02 2.68 16 31 H 0.11 2.81 5.81 -2.39 -0.01 2.80 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.90 5.95 -2.39 -0.01 1.89 16 34 H 0.06 1.64 7.41 -2.39 -0.02 1.62 16 35 H 0.14 2.47 8.00 -2.91 -0.02 2.45 16 36 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.16 3.29 7.19 -2.91 -0.02 3.27 16 Total: -1.00 -74.09 306.27 5.41 -68.67 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 1.01 Total: 18.53 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.83 Total: -6.23 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -3.11 Total: -92.24 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.04 Total: -32.34 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.72 Total: 43.61 kcal Total: -74.09 5.41 -68.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359964748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.364 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds