Wall clock time and date at job start Mon Mar 30 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46981 * 2 1 4 4 C 1.37102 * 120.00480 * 264.74778 * 3 2 1 5 5 H 1.07994 * 120.00018 * 146.16430 * 4 3 2 6 6 C 1.38953 * 119.99391 * 326.16758 * 4 3 2 7 7 N 1.31411 * 120.00374 * 337.68439 * 6 4 3 8 8 Si 1.86803 * 119.99735 * 157.68549 * 6 4 3 9 9 H 1.48505 * 109.47175 * 89.99617 * 8 6 4 10 10 H 1.48492 * 109.47327 * 209.99894 * 8 6 4 11 11 H 1.48500 * 109.46999 * 329.99927 * 8 6 4 12 12 C 1.34777 * 120.00113 * 84.74895 * 3 2 1 13 13 O 1.21286 * 120.00365 * 179.97438 * 12 3 2 14 14 C 1.50707 * 119.99658 * 359.97438 * 12 3 2 15 15 C 1.52995 * 109.46936 * 179.97438 * 14 12 3 16 16 H 1.09010 * 109.47262 * 55.00085 * 15 14 12 17 17 C 1.52992 * 109.47368 * 295.00161 * 15 14 12 18 18 C 1.50703 * 109.47212 * 174.99734 * 15 14 12 19 19 C 1.38671 * 120.42169 * 240.00691 * 18 15 14 20 20 C 1.38631 * 118.42240 * 180.02562 * 19 18 15 21 21 C 1.38230 * 119.15875 * 359.97438 * 20 19 18 22 22 N 1.31850 * 120.76213 * 0.02562 * 21 20 19 23 23 C 1.31886 * 121.73229 * 359.70239 * 22 21 20 24 24 H 1.09004 * 109.46983 * 59.99856 * 1 2 3 25 25 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47440 * 299.99722 * 1 2 3 27 27 H 1.09004 * 109.47228 * 240.00110 * 2 1 3 28 28 H 1.08994 * 109.46955 * 120.00014 * 2 1 3 29 29 H 0.96997 * 119.99942 * 180.02562 * 7 6 4 30 30 H 1.08992 * 109.47137 * 60.00010 * 14 12 3 31 31 H 1.08994 * 109.47155 * 299.99869 * 14 12 3 32 32 H 1.09000 * 109.47479 * 180.02562 * 17 15 14 33 33 H 1.09005 * 109.47114 * 299.99747 * 17 15 14 34 34 H 1.08996 * 109.47638 * 59.99848 * 17 15 14 35 35 H 1.07998 * 120.78863 * 359.96744 * 19 18 15 36 36 H 1.07999 * 120.42180 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.61856 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.62491 * 180.31591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9914 -1.1823 5 1 2.1814 3.0507 -1.3088 6 6 2.9007 1.2467 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7826 1.8631 -3.9772 9 1 3.9649 2.7069 -4.2865 10 1 2.7444 0.7051 -4.9060 11 1 1.5448 2.6676 -4.1378 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1955 1.1624 14 6 1.7779 1.3817 2.4619 15 6 2.0096 2.3542 3.6200 16 1 1.4572 3.2759 3.4366 17 6 3.5028 2.6683 3.7312 18 6 1.5307 1.7288 4.9047 19 6 0.5304 2.3343 5.6502 20 6 0.1219 1.7233 6.8257 21 6 0.7207 0.5390 7.2125 22 7 1.6693 -0.0083 6.4783 23 6 2.0792 0.5420 5.3520 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8903 -0.4108 -2.6823 30 1 2.3992 0.4970 2.6010 31 1 0.7284 1.0884 2.4377 32 1 3.6680 3.3608 4.5566 33 1 4.0553 1.7467 3.9147 34 1 3.8493 3.1207 2.8021 35 1 0.0809 3.2603 5.3234 36 1 -0.6549 2.1665 7.4311 37 1 0.4085 0.0569 8.1271 38 1 2.8552 0.0616 4.7747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359964749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:38 Heat of formation + Delta-G solvation = -7.471617 kcal Electronic energy + Delta-G solvation = -19762.436659 eV Core-core repulsion = 16797.750604 eV Total energy + Delta-G solvation = -2964.686054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27162 -38.67041 -35.63533 -34.52995 -32.20452 -31.99477 -29.90919 -29.42086 -27.54328 -24.82005 -23.86288 -23.38129 -22.23195 -20.53626 -18.52869 -17.17596 -16.77256 -16.33388 -15.92107 -15.01977 -14.75838 -14.27634 -14.20030 -13.89475 -13.57555 -13.16065 -13.01230 -12.86754 -12.47877 -12.34470 -12.15422 -11.79137 -11.34524 -11.11553 -11.01623 -10.83656 -10.79127 -10.51593 -10.34952 -10.24888 -10.04223 -9.74196 -9.35939 -8.93220 -8.87349 -8.29268 -7.47418 -6.32603 -3.93078 1.15331 1.32174 3.16815 3.25940 3.31345 3.84949 3.92275 4.15860 4.45685 4.73413 4.83778 4.96984 5.03297 5.09977 5.14555 5.33375 5.51000 5.59453 5.71590 5.85026 5.89081 5.99580 6.08546 6.11128 6.14090 6.23916 6.25448 6.36599 6.47154 6.55012 6.66702 6.74707 6.87610 6.93559 7.28003 7.60169 8.00821 8.25672 8.52454 9.20566 9.44177 10.03968 10.71012 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.004699 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.104844 B = 5957.109820 C = 6196.485051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.440 5.440 4 C -0.307 4.307 5 H 0.091 0.909 6 C 0.035 3.965 7 N -0.869 5.869 8 Si 0.915 3.085 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.458 3.542 13 O -0.581 6.581 14 C -0.127 4.127 15 C -0.030 4.030 16 H 0.085 0.915 17 C -0.146 4.146 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.173 4.173 21 C 0.082 3.918 22 N -0.485 5.485 23 C 0.102 3.898 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.267 0.733 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 -0.984 12.117 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.159 5.159 4 C -0.435 4.435 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.508 5.508 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.195 1.195 12 C 0.247 3.753 13 O -0.466 6.466 14 C -0.167 4.167 15 C -0.049 4.049 16 H 0.103 0.897 17 C -0.203 4.203 18 C -0.117 4.117 19 C -0.103 4.103 20 C -0.193 4.193 21 C -0.075 4.075 22 N -0.193 5.193 23 C -0.055 4.055 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.131 0.869 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.542 -1.372 12.266 13.529 hybrid contribution -0.537 0.796 -1.096 1.457 sum -6.078 -0.575 11.170 12.730 Atomic orbital electron populations 1.22208 0.98332 1.00304 1.01407 1.21589 0.91642 0.85603 1.04115 1.43539 1.55579 1.11800 1.04991 1.19435 1.39691 0.95408 0.88941 0.89094 1.25309 0.94594 0.96488 1.00448 1.69919 1.32672 1.15321 1.32874 0.86119 0.79023 0.78351 0.82322 1.20322 1.20840 1.19467 1.20200 0.82448 0.87942 0.84733 1.90470 1.50602 1.18805 1.86712 1.21707 1.02237 0.98974 0.93791 1.19829 0.98039 0.98181 0.88881 0.89711 1.21943 0.93873 1.00999 1.03488 1.21140 0.96390 0.96271 0.97872 1.21571 0.95267 0.99547 0.93896 1.22105 1.01776 0.97538 0.97862 1.22687 0.92792 0.93177 0.98830 1.67683 1.12294 1.33506 1.05823 1.22683 0.98077 0.92458 0.92260 0.92483 0.93145 0.93990 0.86914 0.93427 0.92266 0.90140 0.90553 0.93654 0.93422 0.89153 0.84920 0.85115 0.83198 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.15 37.16 0.38 -2.58 16 2 C 0.09 2.04 5.43 -4.04 -0.02 2.02 16 3 N -0.44 -10.94 2.56 -114.81 -0.29 -11.23 16 4 C -0.31 -8.40 8.98 -14.93 -0.13 -8.53 16 5 H 0.09 2.61 7.70 -52.49 -0.40 2.21 16 6 C 0.04 0.92 4.92 -17.47 -0.09 0.84 16 7 N -0.87 -23.17 11.33 55.50 0.63 -22.54 16 8 Si 0.92 20.41 29.61 -169.99 -5.03 15.37 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.46 10.76 7.31 -10.98 -0.08 10.68 16 13 O -0.58 -15.33 13.79 5.55 0.08 -15.26 16 14 C -0.13 -2.27 3.52 -27.88 -0.10 -2.37 16 15 C -0.03 -0.48 2.22 -91.78 -0.20 -0.68 16 16 H 0.08 1.42 7.74 -51.92 -0.40 1.02 16 17 C -0.15 -2.40 8.75 37.15 0.33 -2.07 16 18 C -0.11 -1.59 4.79 -104.48 -0.50 -2.09 16 19 C -0.08 -0.93 9.81 -39.28 -0.39 -1.31 16 20 C -0.17 -1.82 10.11 -39.44 -0.40 -2.22 16 21 C 0.08 0.94 11.18 -17.55 -0.20 0.75 16 22 N -0.48 -6.80 10.36 -13.25 -0.14 -6.94 16 23 C 0.10 1.44 9.95 -17.55 -0.17 1.26 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.71 6.59 -51.93 -0.34 0.37 16 27 H 0.11 2.69 5.34 -51.93 -0.28 2.42 16 28 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.08 1.37 6.85 -51.93 -0.36 1.01 16 31 H 0.08 1.28 6.53 -51.93 -0.34 0.94 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.72 7.43 -51.93 -0.39 0.34 16 34 H 0.09 1.80 5.95 -51.93 -0.31 1.49 16 35 H 0.13 1.39 8.00 -52.49 -0.42 0.97 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.15 2.05 7.19 -52.49 -0.38 1.67 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -30.46 310.95 -6.86 -37.32 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.21 Total: 4.91 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.58 Total: -6.33 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.20 Total: -40.71 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.26 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.46 -6.86 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359964749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.851 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds