Wall clock time and date at job start Mon Mar 30 2020 04:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46981 * 2 1 4 4 C 1.37102 * 120.00480 * 264.74778 * 3 2 1 5 5 H 1.07994 * 120.00018 * 146.16430 * 4 3 2 6 6 C 1.38953 * 119.99391 * 326.16758 * 4 3 2 7 7 N 1.31411 * 120.00374 * 337.68439 * 6 4 3 8 8 Si 1.86803 * 119.99735 * 157.68549 * 6 4 3 9 9 H 1.48505 * 109.47175 * 89.99617 * 8 6 4 10 10 H 1.48492 * 109.47327 * 209.99894 * 8 6 4 11 11 H 1.48500 * 109.46999 * 329.99927 * 8 6 4 12 12 C 1.34777 * 120.00113 * 84.74895 * 3 2 1 13 13 O 1.21286 * 120.00365 * 179.97438 * 12 3 2 14 14 C 1.50707 * 119.99658 * 359.97438 * 12 3 2 15 15 C 1.52995 * 109.46936 * 179.97438 * 14 12 3 16 16 H 1.09010 * 109.47262 * 55.00085 * 15 14 12 17 17 C 1.52992 * 109.47368 * 295.00161 * 15 14 12 18 18 C 1.50703 * 109.47212 * 174.99734 * 15 14 12 19 19 C 1.38671 * 120.42169 * 240.00691 * 18 15 14 20 20 C 1.38631 * 118.42240 * 180.02562 * 19 18 15 21 21 C 1.38230 * 119.15875 * 359.97438 * 20 19 18 22 22 N 1.31850 * 120.76213 * 0.02562 * 21 20 19 23 23 C 1.31886 * 121.73229 * 359.70239 * 22 21 20 24 24 H 1.09004 * 109.46983 * 59.99856 * 1 2 3 25 25 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47440 * 299.99722 * 1 2 3 27 27 H 1.09004 * 109.47228 * 240.00110 * 2 1 3 28 28 H 1.08994 * 109.46955 * 120.00014 * 2 1 3 29 29 H 0.96997 * 119.99942 * 180.02562 * 7 6 4 30 30 H 1.08992 * 109.47137 * 60.00010 * 14 12 3 31 31 H 1.08994 * 109.47155 * 299.99869 * 14 12 3 32 32 H 1.09000 * 109.47479 * 180.02562 * 17 15 14 33 33 H 1.09005 * 109.47114 * 299.99747 * 17 15 14 34 34 H 1.08996 * 109.47638 * 59.99848 * 17 15 14 35 35 H 1.07998 * 120.78863 * 359.96744 * 19 18 15 36 36 H 1.07999 * 120.42180 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.61856 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.62491 * 180.31591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9914 -1.1823 5 1 2.1814 3.0507 -1.3088 6 6 2.9007 1.2467 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7826 1.8631 -3.9772 9 1 3.9649 2.7069 -4.2865 10 1 2.7444 0.7051 -4.9060 11 1 1.5448 2.6676 -4.1378 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1955 1.1624 14 6 1.7779 1.3817 2.4619 15 6 2.0096 2.3542 3.6200 16 1 1.4572 3.2759 3.4366 17 6 3.5028 2.6683 3.7312 18 6 1.5307 1.7288 4.9047 19 6 0.5304 2.3343 5.6502 20 6 0.1219 1.7233 6.8257 21 6 0.7207 0.5390 7.2125 22 7 1.6693 -0.0083 6.4783 23 6 2.0792 0.5420 5.3520 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8903 -0.4108 -2.6823 30 1 2.3992 0.4970 2.6010 31 1 0.7284 1.0884 2.4377 32 1 3.6680 3.3608 4.5566 33 1 4.0553 1.7467 3.9147 34 1 3.8493 3.1207 2.8021 35 1 0.0809 3.2603 5.3234 36 1 -0.6549 2.1665 7.4311 37 1 0.4085 0.0569 8.1271 38 1 2.8552 0.0616 4.7747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359964749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:37 Heat of formation + Delta-G solvation = -25.139738 kcal Electronic energy + Delta-G solvation = -19763.202806 eV Core-core repulsion = 16797.750604 eV Total energy + Delta-G solvation = -2965.452201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33166 -40.36909 -37.24344 -36.10123 -33.99105 -33.08850 -31.22136 -30.93630 -29.06771 -26.62942 -25.00686 -24.38056 -23.87398 -21.86128 -20.20506 -18.72485 -18.18139 -17.63954 -17.32360 -16.75603 -16.06894 -15.93256 -15.66535 -15.01499 -14.94069 -14.57215 -14.38934 -14.00324 -13.91029 -13.75162 -13.59638 -13.55466 -12.91492 -12.77549 -12.66958 -12.40191 -12.16501 -12.10140 -11.97387 -11.87543 -11.66431 -10.86263 -10.67903 -10.34954 -10.18863 -9.83163 -9.42305 -8.31877 -6.00403 0.22061 0.39188 1.37424 1.42105 1.54375 2.09437 2.31372 2.89499 3.04326 3.11276 3.56356 3.79346 3.84489 4.10680 4.12941 4.15169 4.25547 4.30269 4.34381 4.53556 4.63414 4.69454 4.74154 4.78418 4.89385 4.94090 5.03319 5.06637 5.17242 5.27123 5.32166 5.41577 5.47673 5.55896 5.59951 5.83954 6.23572 6.57449 7.07591 7.22641 7.53866 8.13515 8.70132 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.004699 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.104844 B = 5957.109820 C = 6196.485051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.456 5.456 4 C -0.340 4.340 5 H 0.064 0.936 6 C 0.003 3.997 7 N -0.889 5.889 8 Si 0.977 3.023 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.268 1.268 12 C 0.447 3.553 13 O -0.620 6.620 14 C -0.112 4.112 15 C -0.020 4.020 16 H 0.073 0.927 17 C -0.141 4.141 18 C -0.125 4.125 19 C -0.081 4.081 20 C -0.162 4.162 21 C 0.079 3.921 22 N -0.509 5.509 23 C 0.090 3.910 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.273 0.727 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 -1.809 13.607 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.175 5.175 4 C -0.468 4.468 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.527 5.527 8 Si 0.801 3.199 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.193 1.193 12 C 0.237 3.763 13 O -0.507 6.507 14 C -0.152 4.152 15 C -0.040 4.040 16 H 0.092 0.908 17 C -0.198 4.198 18 C -0.127 4.127 19 C -0.107 4.107 20 C -0.181 4.181 21 C -0.077 4.077 22 N -0.217 5.217 23 C -0.066 4.066 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.165 0.835 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.139 -2.226 13.760 15.661 hybrid contribution -0.038 1.057 -1.460 1.803 sum -7.176 -1.169 12.300 14.288 Atomic orbital electron populations 1.22097 0.95523 1.02328 1.01201 1.21668 0.93937 0.83749 1.03660 1.43821 1.55908 1.12974 1.04787 1.19375 1.41613 0.94794 0.91062 0.91850 1.26011 0.93675 0.96590 1.03625 1.69986 1.32590 1.15989 1.34106 0.85195 0.78708 0.78181 0.77813 1.20507 1.19252 1.19294 1.21135 0.81390 0.87612 0.86194 1.90441 1.52034 1.20650 1.87555 1.21622 1.03220 0.99131 0.91226 1.19645 0.97426 0.97358 0.89528 0.90826 1.21845 0.94619 1.01477 1.01897 1.20844 0.97867 0.96751 0.97252 1.21845 0.94568 1.00057 0.94244 1.22467 1.01735 0.96759 0.97167 1.23296 0.91690 0.93457 0.99292 1.67704 1.13583 1.34348 1.06112 1.22662 0.98489 0.92713 0.92758 0.94056 0.89928 0.92793 0.89310 0.91796 0.91755 0.89152 0.88839 0.92070 0.92548 0.93121 0.83480 0.81518 0.80179 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 10.15 71.98 0.73 -4.59 16 2 C 0.09 4.00 5.43 86.38 0.47 4.47 16 3 N -0.46 -23.21 2.56 -635.54 -1.63 -24.83 16 4 C -0.34 -19.30 8.98 84.04 0.75 -18.54 16 5 H 0.06 3.85 7.70 -2.91 -0.02 3.83 16 6 C 0.00 0.17 4.92 84.93 0.42 0.59 16 7 N -0.89 -47.83 11.33 21.66 0.25 -47.58 16 8 Si 0.98 42.33 29.61 68.60 2.03 44.36 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 12 C 0.45 21.54 7.31 87.66 0.64 22.18 16 13 O -0.62 -34.23 13.79 -3.05 -0.04 -34.27 16 14 C -0.11 -3.97 3.52 29.85 0.11 -3.87 16 15 C -0.02 -0.63 2.22 -11.54 -0.03 -0.66 16 16 H 0.07 2.48 7.74 -2.38 -0.02 2.46 16 17 C -0.14 -4.71 8.75 71.98 0.63 -4.08 16 18 C -0.13 -3.27 4.79 -19.77 -0.09 -3.37 16 19 C -0.08 -1.74 9.81 22.47 0.22 -1.52 16 20 C -0.16 -2.78 10.11 22.36 0.23 -2.55 16 21 C 0.08 1.55 11.18 84.69 0.95 2.50 16 22 N -0.51 -13.17 10.36 -195.84 -2.03 -15.20 16 23 C 0.09 2.40 9.95 84.67 0.84 3.24 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.05 1.72 6.59 -2.39 -0.02 1.71 16 27 H 0.09 4.27 5.34 -2.39 -0.01 4.26 16 28 H 0.06 2.47 6.66 -2.39 -0.02 2.45 16 29 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.09 3.02 6.85 -2.39 -0.02 3.01 16 31 H 0.09 2.99 6.53 -2.39 -0.02 2.97 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.73 7.43 -2.38 -0.02 1.71 16 34 H 0.05 2.10 5.95 -2.39 -0.01 2.09 16 35 H 0.15 2.66 8.00 -2.91 -0.02 2.64 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.15 3.92 7.19 -2.91 -0.02 3.90 16 Total: -1.00 -68.14 310.95 5.50 -62.65 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 1.05 Total: 21.08 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.86 Total: -6.20 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -3.41 Total: -87.61 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.04 Total: -34.27 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -68.14 5.50 -62.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359964749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.507 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds