Wall clock time and date at job start Mon Mar 30 2020 04:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53001 * 109.47042 * 119.99940 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00098 * 4 2 1 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 0.02562 * 7 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 7 5 4 10 10 C 1.50702 * 109.47427 * 89.99800 * 9 7 5 11 11 H 1.07999 * 119.99972 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99945 * 179.97438 * 10 9 7 13 13 N 1.31519 * 120.00264 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99887 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47089 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46706 * 120.00063 * 14 12 10 17 17 H 1.48497 * 109.47206 * 240.00218 * 14 12 10 18 18 C 1.50699 * 109.47212 * 240.00292 * 2 1 3 19 19 C 1.38670 * 120.41956 * 120.00157 * 18 2 1 20 20 C 1.38631 * 118.42190 * 180.02562 * 19 18 2 21 21 C 1.38224 * 119.15787 * 359.97438 * 20 19 18 22 22 N 1.31854 * 120.76621 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72496 * 359.69417 * 22 21 20 24 24 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47017 * 300.00198 * 1 2 3 26 26 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 27 27 H 1.08998 * 109.46837 * 175.00120 * 4 2 1 28 28 H 1.09002 * 109.46926 * 54.99923 * 4 2 1 29 29 H 1.08995 * 109.47693 * 90.00207 * 8 7 5 30 30 H 1.09003 * 109.47006 * 210.00121 * 8 7 5 31 31 H 1.09004 * 109.47665 * 329.99813 * 8 7 5 32 32 H 1.09002 * 109.47192 * 209.99937 * 9 7 5 33 33 H 1.08996 * 109.47342 * 329.99648 * 9 7 5 34 34 H 0.96991 * 120.00123 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.79231 * 359.97438 * 19 18 2 36 36 H 1.07991 * 120.42038 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.61815 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.61728 * 180.31176 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 8 1.0117 1.0874 2.3633 7 7 1.9844 -0.3920 3.7002 8 6 2.7454 -1.6363 3.8370 9 6 1.6020 0.3677 4.8930 10 6 0.2535 -0.1006 5.3759 11 1 -0.2665 -0.8859 4.8475 12 6 -0.3160 0.4729 6.4930 13 7 0.3175 1.4289 7.1369 14 14 -1.9873 -0.1081 7.0921 15 1 -2.4853 -1.1862 6.2006 16 1 -1.8628 -0.6296 8.4769 17 1 -2.9419 1.0292 7.0753 18 6 2.0324 -0.7103 -1.2305 19 6 2.8301 -0.0448 -2.1489 20 6 3.2688 -0.7379 -3.2665 21 6 2.8993 -2.0602 -3.4267 22 7 2.1392 -2.6613 -2.5326 23 6 1.7083 -2.0347 -1.4551 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.1263 -0.7994 1.2056 28 1 1.6053 -1.7198 1.2952 29 1 3.8122 -1.4136 3.8197 30 1 2.4898 -2.1165 4.7815 31 1 2.5004 -2.3047 3.0116 32 1 2.3432 0.2109 5.6767 33 1 1.5517 1.4285 4.6475 34 1 -0.0833 1.8325 7.9225 35 1 3.1027 0.9893 -1.9976 36 1 3.8918 -0.2512 -4.0021 37 1 3.2365 -2.6072 -4.2948 38 1 1.0914 -2.5615 -0.7421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359965226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:22 Heat of formation + Delta-G solvation = -11.295493 kcal Electronic energy + Delta-G solvation = -19341.501391 eV Core-core repulsion = 16376.649521 eV Total energy + Delta-G solvation = -2964.851870 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46272 -39.04884 -35.62480 -34.61338 -32.62839 -32.31332 -30.20433 -28.47897 -27.07152 -25.58586 -24.24281 -23.61799 -22.65045 -20.46103 -18.31065 -17.32432 -16.60202 -16.50151 -16.20356 -15.27780 -14.92599 -14.87465 -14.28417 -14.05634 -13.71086 -13.55360 -13.16409 -12.76560 -12.65721 -12.38498 -12.15689 -11.91721 -11.70618 -11.26689 -11.13229 -11.06463 -10.86253 -10.72517 -10.54907 -10.15162 -9.90064 -9.60921 -9.52410 -9.06768 -8.80092 -8.44403 -7.63495 -6.04921 -4.09650 0.99064 1.16607 3.29347 3.36367 3.39301 3.45031 3.68078 3.95812 4.32601 4.44296 4.66972 4.70041 4.86691 4.92293 5.08292 5.19129 5.25202 5.30815 5.48118 5.52356 5.62974 5.75995 5.80632 5.83826 5.95065 5.96113 6.06365 6.19183 6.21934 6.42298 6.57554 6.68495 7.05515 7.43949 7.54571 7.85418 7.91726 8.23081 8.42329 8.90222 9.10132 9.55692 11.03187 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035838 B = 0.004059 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.101895 B = 6897.422894 C = 7008.545691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 H 0.088 0.912 4 C -0.133 4.133 5 C 0.505 3.495 6 O -0.539 6.539 7 N -0.603 5.603 8 C 0.083 3.917 9 C 0.244 3.756 10 C -0.525 4.525 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.118 4.118 19 C -0.075 4.075 20 C -0.172 4.172 21 C 0.085 3.915 22 N -0.485 5.485 23 C 0.102 3.898 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.976 -6.148 -17.182 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.051 4.051 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.291 3.709 6 O -0.418 6.418 7 N -0.335 5.335 8 C -0.061 4.061 9 C 0.125 3.875 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.120 4.120 19 C -0.101 4.101 20 C -0.192 4.192 21 C -0.072 4.072 22 N -0.193 5.193 23 C -0.055 4.055 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.399 -6.367 -17.185 19.412 hybrid contribution -0.540 0.499 0.571 0.931 sum 5.859 -5.868 -16.614 18.568 Atomic orbital electron populations 1.21978 0.93287 1.01789 1.03625 1.19848 0.97061 0.99113 0.89072 0.89380 1.21782 1.02175 1.00219 0.93170 1.20251 0.80255 0.86007 0.84353 1.90630 1.39989 1.24981 1.86153 1.48171 1.53770 1.23973 1.07601 1.21638 0.94896 0.86927 1.02661 1.19285 0.95267 0.92572 0.80355 1.21471 1.03499 1.20338 1.11047 0.92405 1.24944 0.97842 0.94900 0.96479 1.69942 1.38447 1.25455 1.19592 0.86449 0.83940 0.78680 0.78398 1.19788 1.20978 1.20866 1.21052 0.97790 0.95679 0.97521 1.21583 0.95003 1.00341 0.93138 1.22128 1.01895 0.96244 0.98906 1.22720 0.94430 0.92424 0.97622 1.67695 1.10088 1.38894 1.02597 1.22666 0.96893 0.91621 0.94308 0.93209 0.89199 0.93176 0.89673 0.89335 0.93823 0.90795 0.92422 0.95114 0.93845 0.92781 0.84801 0.84973 0.83076 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.75 37.16 0.33 -1.81 16 2 C -0.03 -0.42 2.22 -91.77 -0.20 -0.62 16 3 H 0.09 1.24 7.74 -51.93 -0.40 0.84 16 4 C -0.13 -1.88 3.47 -27.89 -0.10 -1.97 16 5 C 0.50 10.03 7.39 -10.98 -0.08 9.94 16 6 O -0.54 -12.80 13.55 5.56 0.08 -12.73 16 7 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 8 C 0.08 1.30 10.24 59.84 0.61 1.91 16 9 C 0.24 6.36 5.16 -5.20 -0.03 6.33 16 10 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.12 -1.38 4.79 -104.48 -0.50 -1.88 16 19 C -0.07 -0.76 9.81 -39.28 -0.39 -1.15 16 20 C -0.17 -1.54 10.11 -39.44 -0.40 -1.94 16 21 C 0.08 0.84 11.18 -17.55 -0.20 0.64 16 22 N -0.48 -5.93 10.36 -13.25 -0.14 -6.07 16 23 C 0.10 1.21 9.95 -17.55 -0.17 1.04 16 24 H 0.05 0.64 7.43 -51.93 -0.39 0.26 16 25 H 0.09 1.60 5.95 -51.93 -0.31 1.29 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 28 H 0.09 1.11 6.84 -51.93 -0.36 0.76 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 31 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.13 1.16 8.00 -52.49 -0.42 0.74 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.15 1.65 7.19 -52.49 -0.38 1.28 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -33.11 318.63 -7.08 -40.19 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.46 Total: -1.03 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.55 Total: -3.02 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.08 Total: -45.00 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.11 -7.08 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359965226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.895 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds