Wall clock time and date at job start Mon Mar 30 2020 04:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53001 * 109.47042 * 119.99940 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00098 * 4 2 1 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 0.02562 * 7 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 7 5 4 10 10 C 1.50702 * 109.47427 * 89.99800 * 9 7 5 11 11 H 1.07999 * 119.99972 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99945 * 179.97438 * 10 9 7 13 13 N 1.31519 * 120.00264 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99887 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47089 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46706 * 120.00063 * 14 12 10 17 17 H 1.48497 * 109.47206 * 240.00218 * 14 12 10 18 18 C 1.50699 * 109.47212 * 240.00292 * 2 1 3 19 19 C 1.38670 * 120.41956 * 120.00157 * 18 2 1 20 20 C 1.38631 * 118.42190 * 180.02562 * 19 18 2 21 21 C 1.38224 * 119.15787 * 359.97438 * 20 19 18 22 22 N 1.31854 * 120.76621 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72496 * 359.69417 * 22 21 20 24 24 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47017 * 300.00198 * 1 2 3 26 26 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 27 27 H 1.08998 * 109.46837 * 175.00120 * 4 2 1 28 28 H 1.09002 * 109.46926 * 54.99923 * 4 2 1 29 29 H 1.08995 * 109.47693 * 90.00207 * 8 7 5 30 30 H 1.09003 * 109.47006 * 210.00121 * 8 7 5 31 31 H 1.09004 * 109.47665 * 329.99813 * 8 7 5 32 32 H 1.09002 * 109.47192 * 209.99937 * 9 7 5 33 33 H 1.08996 * 109.47342 * 329.99648 * 9 7 5 34 34 H 0.96991 * 120.00123 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.79231 * 359.97438 * 19 18 2 36 36 H 1.07991 * 120.42038 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.61815 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.61728 * 180.31176 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 8 1.0117 1.0874 2.3633 7 7 1.9844 -0.3920 3.7002 8 6 2.7454 -1.6363 3.8370 9 6 1.6020 0.3677 4.8930 10 6 0.2535 -0.1006 5.3759 11 1 -0.2665 -0.8859 4.8475 12 6 -0.3160 0.4729 6.4930 13 7 0.3175 1.4289 7.1369 14 14 -1.9873 -0.1081 7.0921 15 1 -2.4853 -1.1862 6.2006 16 1 -1.8628 -0.6296 8.4769 17 1 -2.9419 1.0292 7.0753 18 6 2.0324 -0.7103 -1.2305 19 6 2.8301 -0.0448 -2.1489 20 6 3.2688 -0.7379 -3.2665 21 6 2.8993 -2.0602 -3.4267 22 7 2.1392 -2.6613 -2.5326 23 6 1.7083 -2.0347 -1.4551 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 3.1263 -0.7994 1.2056 28 1 1.6053 -1.7198 1.2952 29 1 3.8122 -1.4136 3.8197 30 1 2.4898 -2.1165 4.7815 31 1 2.5004 -2.3047 3.0116 32 1 2.3432 0.2109 5.6767 33 1 1.5517 1.4285 4.6475 34 1 -0.0833 1.8325 7.9225 35 1 3.1027 0.9893 -1.9976 36 1 3.8918 -0.2512 -4.0021 37 1 3.2365 -2.6072 -4.2948 38 1 1.0914 -2.5615 -0.7421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359965226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:22 Heat of formation + Delta-G solvation = -32.247326 kcal Electronic energy + Delta-G solvation = -19342.409931 eV Core-core repulsion = 16376.649521 eV Total energy + Delta-G solvation = -2965.760410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38074 -40.49609 -36.95170 -36.11399 -34.71271 -33.10750 -31.24223 -30.08981 -28.50820 -27.16262 -25.37695 -24.57990 -24.19797 -21.56423 -19.81025 -18.69260 -18.23483 -17.66589 -17.37084 -16.89354 -16.43747 -16.00489 -15.80088 -15.03856 -14.88471 -14.70805 -14.29259 -13.92707 -13.87384 -13.75176 -13.70614 -13.43507 -13.12679 -13.03959 -12.69415 -12.55085 -12.22706 -12.18864 -12.16310 -11.78051 -11.63761 -10.68755 -10.64716 -10.49639 -10.30248 -9.84298 -9.37692 -8.22167 -6.36983 0.21595 0.39256 1.36420 1.38580 1.50491 1.88803 2.33260 2.48245 2.91763 3.07248 3.49744 3.69518 3.80063 4.02669 4.09142 4.13212 4.16451 4.33361 4.38089 4.52343 4.67250 4.68652 4.73275 4.82777 4.91758 4.97025 4.98837 5.06566 5.15834 5.24563 5.27472 5.39350 5.51906 5.58669 5.83439 5.86574 6.07169 6.71164 6.83087 7.07958 7.29513 7.53444 8.84927 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035838 B = 0.004059 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.101895 B = 6897.422894 C = 7008.545691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.023 4.023 3 H 0.075 0.925 4 C -0.117 4.117 5 C 0.495 3.505 6 O -0.588 6.588 7 N -0.613 5.613 8 C 0.078 3.922 9 C 0.259 3.741 10 C -0.540 4.540 11 H 0.054 0.946 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.967 3.033 15 H -0.266 1.266 16 H -0.270 1.270 17 H -0.282 1.282 18 C -0.125 4.125 19 C -0.081 4.081 20 C -0.164 4.164 21 C 0.080 3.920 22 N -0.509 5.509 23 C 0.092 3.908 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.021 0.979 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.554 -7.989 -18.998 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.043 4.043 3 H 0.093 0.907 4 C -0.157 4.157 5 C 0.284 3.716 6 O -0.469 6.469 7 N -0.345 5.345 8 C -0.064 4.064 9 C 0.137 3.863 10 C -0.579 4.579 11 H 0.072 0.928 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.792 3.208 15 H -0.191 1.191 16 H -0.195 1.195 17 H -0.208 1.208 18 C -0.127 4.127 19 C -0.107 4.107 20 C -0.183 4.183 21 C -0.077 4.077 22 N -0.218 5.218 23 C -0.064 4.064 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.039 0.961 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.182 0.818 37 H 0.195 0.805 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.006 -8.248 -19.015 21.879 hybrid contribution -0.655 1.100 1.055 1.659 sum 6.351 -7.148 -17.961 20.347 Atomic orbital electron populations 1.21894 0.94392 1.02072 1.01959 1.19682 0.96134 0.98658 0.89799 0.90694 1.21756 1.03841 1.00030 0.90066 1.21307 0.79057 0.85767 0.85450 1.90611 1.42022 1.27355 1.86940 1.48210 1.54455 1.25326 1.06496 1.21918 0.95631 0.85125 1.03754 1.18731 0.94519 0.90883 0.82140 1.21743 1.04496 1.20328 1.11304 0.92812 1.25866 1.01832 0.94901 0.96642 1.70058 1.40276 1.26510 1.20109 0.85371 0.78847 0.78229 0.78387 1.19053 1.19479 1.20765 1.20790 0.99051 0.95698 0.97176 1.21848 0.94511 1.01091 0.93225 1.22452 1.01293 0.95826 0.98776 1.23261 0.93473 0.93122 0.97805 1.67720 1.11178 1.39703 1.03218 1.22740 0.97268 0.91709 0.94684 0.91929 0.93247 0.92322 0.87041 0.87089 0.91316 0.91705 0.88801 0.96143 0.98380 0.92438 0.83569 0.81837 0.80450 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 8.75 71.98 0.63 -3.54 16 2 C -0.02 -0.59 2.22 -11.54 -0.03 -0.62 16 3 H 0.07 2.11 7.74 -2.39 -0.02 2.10 16 4 C -0.12 -3.11 3.47 29.85 0.10 -3.00 16 5 C 0.49 19.87 7.39 87.65 0.65 20.52 16 6 O -0.59 -29.27 13.55 -3.04 -0.04 -29.31 16 7 N -0.61 -25.79 2.86 -851.16 -2.43 -28.22 16 8 C 0.08 2.30 10.24 127.77 1.31 3.61 16 9 C 0.26 14.04 5.16 85.64 0.44 14.48 16 10 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 11 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 14 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 C -0.13 -2.65 4.79 -19.77 -0.09 -2.74 16 19 C -0.08 -1.43 9.81 22.47 0.22 -1.21 16 20 C -0.16 -2.35 10.11 22.36 0.23 -2.13 16 21 C 0.08 1.32 11.18 84.69 0.95 2.27 16 22 N -0.51 -11.22 10.36 -195.85 -2.03 -13.25 16 23 C 0.09 1.99 9.95 84.67 0.84 2.83 16 24 H 0.06 1.57 7.43 -2.39 -0.02 1.56 16 25 H 0.05 1.83 5.95 -2.39 -0.01 1.81 16 26 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.11 2.42 8.11 -2.39 -0.02 2.40 16 28 H 0.11 2.48 6.84 -2.39 -0.02 2.46 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.09 2.08 6.44 -2.38 -0.02 2.06 16 32 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.15 2.17 8.00 -2.91 -0.02 2.14 16 36 H 0.16 1.28 8.06 -2.92 -0.02 1.25 16 37 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.16 3.07 7.19 -2.91 -0.02 3.05 16 Total: -1.00 -75.05 318.63 4.80 -70.25 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.04 Total: 9.42 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.95 Total: 0.26 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.18 Total: -97.77 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.04 Total: -29.31 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.05 4.80 -70.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359965226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.005 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds