Wall clock time and date at job start Mon Mar 30 2020 04:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47117 * 2 1 4 4 H 1.09004 * 109.47136 * 54.99756 * 3 2 1 5 5 N 1.46896 * 109.47202 * 295.00164 * 3 2 1 6 6 C 1.46901 * 111.00249 * 155.00173 * 5 3 2 7 7 H 1.08993 * 109.46938 * 34.99622 * 6 5 3 8 8 C 1.50701 * 109.46939 * 274.99683 * 6 5 3 9 9 H 1.07999 * 120.00032 * 305.05652 * 8 6 5 10 10 C 1.37882 * 119.99994 * 125.04953 * 8 6 5 11 11 N 1.31512 * 119.99928 * 172.85803 * 10 8 6 12 12 Si 1.86800 * 119.99844 * 352.86168 * 10 8 6 13 13 H 1.48496 * 109.46915 * 85.60713 * 12 10 8 14 14 H 1.48501 * 109.47185 * 205.60455 * 12 10 8 15 15 H 1.48501 * 109.47204 * 325.60722 * 12 10 8 16 16 C 1.50701 * 109.46952 * 155.00032 * 6 5 3 17 17 C 1.38230 * 120.00264 * 45.77491 * 16 6 5 18 18 C 1.38236 * 119.99810 * 179.78710 * 17 16 6 19 19 C 1.38237 * 120.00032 * 0.43950 * 18 17 16 20 20 C 1.38228 * 119.99933 * 359.81307 * 19 18 17 21 21 C 1.38234 * 120.00148 * 359.97438 * 20 19 18 22 22 C 1.50697 * 109.47192 * 174.99944 * 3 2 1 23 23 N 1.34782 * 120.00236 * 300.00114 * 22 3 2 24 24 O 1.21282 * 120.00075 * 119.99876 * 22 3 2 25 25 H 1.08996 * 109.47335 * 299.99947 * 1 2 3 26 26 H 1.08993 * 109.47185 * 60.00292 * 1 2 3 27 27 H 1.09008 * 109.47037 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47335 * 240.00053 * 2 1 3 29 29 H 1.09002 * 109.47136 * 119.99956 * 2 1 3 30 30 H 1.00907 * 110.99766 * 278.95450 * 5 3 2 31 31 H 0.96996 * 119.99565 * 179.97438 * 11 10 8 32 32 H 1.07995 * 120.00114 * 359.97438 * 17 16 6 33 33 H 1.08004 * 120.00161 * 180.27289 * 18 17 16 34 34 H 1.08004 * 119.99710 * 179.83680 * 19 18 17 35 35 H 1.08004 * 120.00182 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.00395 * 180.02562 * 21 20 19 37 37 H 0.96998 * 119.99512 * 359.97438 * 23 22 3 38 38 H 0.96996 * 120.00324 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6514 2.0992 -1.2552 6 6 1.5726 3.5562 -1.0846 7 1 2.3421 3.8822 -0.3849 8 6 0.2146 3.9261 -0.5460 9 1 -0.6773 3.6096 -1.0664 10 6 0.1107 4.6686 0.6112 11 7 -1.0633 5.1110 1.0055 12 14 1.6377 5.0463 1.6187 13 1 2.2969 6.2634 1.0811 14 1 1.2524 5.2764 3.0343 15 1 2.5778 3.8993 1.5418 16 6 1.7857 4.2300 -2.4156 17 6 1.1284 3.7645 -3.5391 18 6 1.3206 4.3854 -4.7591 19 6 2.1770 5.4661 -4.8574 20 6 2.8383 5.9282 -3.7350 21 6 2.6428 5.3101 -2.5141 22 6 3.5419 1.4443 0.1238 23 7 4.1298 0.8911 1.2032 24 8 4.2216 1.9435 -0.7477 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2853 1.8563 -2.0017 31 1 -1.1363 5.6330 1.8197 32 1 0.4625 2.9178 -3.4631 33 1 0.8036 4.0246 -5.6361 34 1 2.3291 5.9495 -5.8112 35 1 3.5071 6.7728 -3.8117 36 1 3.1591 5.6714 -1.6370 37 1 3.5861 0.4921 1.9004 38 1 5.0964 0.8926 1.2831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379293652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:06 Heat of formation + Delta-G solvation = -20.828763 kcal Electronic energy + Delta-G solvation = -20351.913513 eV Core-core repulsion = 17386.648250 eV Total energy + Delta-G solvation = -2965.265264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60161 -38.42482 -35.67927 -33.87207 -32.92873 -31.82893 -30.16513 -29.76208 -27.10334 -25.45789 -22.52037 -21.88414 -21.68411 -19.85121 -19.62091 -17.42792 -16.95984 -16.51145 -16.10714 -14.97622 -14.79968 -14.30255 -14.09135 -13.99621 -13.78422 -13.33740 -12.92732 -12.65947 -12.33640 -12.25182 -11.88056 -11.69847 -11.57066 -11.06120 -10.97688 -10.49286 -10.41039 -10.32644 -10.23343 -9.74773 -9.70302 -9.51180 -9.44612 -8.68000 -8.16586 -7.85147 -7.46425 -6.17998 -4.14335 2.15669 2.19424 2.95522 3.16039 3.23910 3.27180 3.84514 4.28518 4.54932 4.94999 5.16036 5.19807 5.47020 5.57554 5.59669 5.66611 5.74808 5.85957 6.02463 6.13597 6.23470 6.32002 6.34622 6.36075 6.56770 6.63954 6.76193 6.85858 6.96222 7.00812 7.18775 7.21924 7.40221 7.52928 7.54162 7.80757 7.89542 8.24679 8.53053 8.60493 8.96438 9.44819 10.94622 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.009430 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.502789 B = 2968.686874 C = 3584.757007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.072 3.928 4 H 0.111 0.889 5 N -0.646 5.646 6 C 0.213 3.787 7 H 0.021 0.979 8 C -0.478 4.478 9 H 0.084 0.916 10 C 0.075 3.925 11 N -0.888 5.888 12 Si 0.865 3.135 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.270 1.270 16 C -0.036 4.036 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.124 4.124 21 C -0.126 4.126 22 C 0.488 3.512 23 N -0.860 5.860 24 O -0.547 6.547 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.327 0.673 31 H 0.265 0.735 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.399 0.601 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -7.568 -1.587 10.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 C -0.043 4.043 4 H 0.128 0.872 5 N -0.277 5.277 6 C 0.106 3.894 7 H 0.038 0.962 8 C -0.517 4.517 9 H 0.102 0.898 10 C -0.128 4.128 11 N -0.526 5.526 12 Si 0.693 3.307 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.196 1.196 16 C -0.038 4.038 17 C -0.121 4.121 18 C -0.145 4.145 19 C -0.165 4.165 20 C -0.142 4.142 21 C -0.144 4.144 22 C 0.272 3.728 23 N -0.424 5.424 24 O -0.423 6.423 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.228 0.772 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.349 -7.170 -2.018 9.787 hybrid contribution 1.960 0.542 1.249 2.387 sum 8.309 -6.628 -0.769 10.657 Atomic orbital electron populations 1.21603 0.93992 0.99901 1.04081 1.21401 0.97989 0.93617 1.00768 1.21777 0.87150 0.97506 0.97875 0.87176 1.61275 1.52132 1.10763 1.03488 1.18772 0.97224 0.83560 0.89861 0.96167 1.20857 0.91036 1.31573 1.08207 0.89806 1.25058 0.95316 0.95139 0.97334 1.69882 1.23126 1.35631 1.23916 0.87083 0.84122 0.79380 0.80070 1.20088 1.21344 1.19575 1.20404 0.92383 0.95005 0.95979 1.20968 0.99206 1.00206 0.91676 1.21050 0.99117 0.96803 0.97573 1.20862 0.99481 0.98398 0.97786 1.20924 1.00374 0.99788 0.93157 1.20964 0.99299 0.97181 0.96995 1.22480 0.93516 0.75871 0.80938 1.44033 1.10934 1.63061 1.24372 1.90700 1.65991 1.45139 1.40517 0.92692 0.90431 0.94175 0.92164 0.92753 0.85375 0.92500 0.85726 0.87130 0.87376 0.87299 0.87524 0.77248 0.77855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.80 37.16 0.36 -1.72 16 2 C -0.10 -1.42 5.55 -26.73 -0.15 -1.57 16 3 C 0.07 1.29 2.21 -68.87 -0.15 1.14 16 4 H 0.11 2.21 6.61 -51.93 -0.34 1.86 16 5 N -0.65 -13.09 4.89 -103.40 -0.51 -13.59 16 6 C 0.21 4.95 1.83 -70.02 -0.13 4.82 16 7 H 0.02 0.51 3.97 -51.93 -0.21 0.30 16 8 C -0.48 -12.72 8.75 -34.44 -0.30 -13.02 16 9 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 12 Si 0.87 20.93 26.50 -169.99 -4.50 16.42 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.25 6.22 56.52 0.35 -5.90 16 16 C -0.04 -0.81 4.65 -104.62 -0.49 -1.30 16 17 C -0.10 -2.07 9.08 -39.59 -0.36 -2.43 16 18 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 19 C -0.15 -2.53 10.05 -39.59 -0.40 -2.93 16 20 C -0.12 -2.30 10.05 -39.59 -0.40 -2.69 16 21 C -0.13 -2.69 9.67 -39.58 -0.38 -3.07 16 22 C 0.49 8.65 7.13 -10.98 -0.08 8.57 16 23 N -0.86 -11.00 8.74 31.22 0.27 -10.72 16 24 O -0.55 -11.69 16.48 5.56 0.09 -11.59 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.34 7.75 -51.93 -0.40 0.93 16 27 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.62 7.43 -51.93 -0.39 0.24 16 30 H 0.33 6.61 7.16 -39.29 -0.28 6.33 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.12 2.46 7.90 -52.49 -0.41 2.05 16 33 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 35 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 36 H 0.11 2.29 7.99 -52.48 -0.42 1.87 16 37 H 0.40 3.94 8.19 -40.82 -0.33 3.60 16 38 H 0.39 4.37 8.93 -40.82 -0.36 4.01 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -31.40 316.15 -7.37 -38.76 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -5.30 Total: 16.05 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.96 Total: -14.91 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.54 Total: -49.50 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.50 Total: 16.42 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.40 -7.37 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379293652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.933 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds