Wall clock time and date at job start Mon Mar 30 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47117 * 2 1 4 4 H 1.09004 * 109.47136 * 54.99756 * 3 2 1 5 5 N 1.46896 * 109.47202 * 295.00164 * 3 2 1 6 6 C 1.46901 * 111.00249 * 155.00173 * 5 3 2 7 7 H 1.08993 * 109.46938 * 34.99622 * 6 5 3 8 8 C 1.50701 * 109.46939 * 274.99683 * 6 5 3 9 9 H 1.07999 * 120.00032 * 305.05652 * 8 6 5 10 10 C 1.37882 * 119.99994 * 125.04953 * 8 6 5 11 11 N 1.31512 * 119.99928 * 172.85803 * 10 8 6 12 12 Si 1.86800 * 119.99844 * 352.86168 * 10 8 6 13 13 H 1.48496 * 109.46915 * 85.60713 * 12 10 8 14 14 H 1.48501 * 109.47185 * 205.60455 * 12 10 8 15 15 H 1.48501 * 109.47204 * 325.60722 * 12 10 8 16 16 C 1.50701 * 109.46952 * 155.00032 * 6 5 3 17 17 C 1.38230 * 120.00264 * 45.77491 * 16 6 5 18 18 C 1.38236 * 119.99810 * 179.78710 * 17 16 6 19 19 C 1.38237 * 120.00032 * 0.43950 * 18 17 16 20 20 C 1.38228 * 119.99933 * 359.81307 * 19 18 17 21 21 C 1.38234 * 120.00148 * 359.97438 * 20 19 18 22 22 C 1.50697 * 109.47192 * 174.99944 * 3 2 1 23 23 N 1.34782 * 120.00236 * 300.00114 * 22 3 2 24 24 O 1.21282 * 120.00075 * 119.99876 * 22 3 2 25 25 H 1.08996 * 109.47335 * 299.99947 * 1 2 3 26 26 H 1.08993 * 109.47185 * 60.00292 * 1 2 3 27 27 H 1.09008 * 109.47037 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47335 * 240.00053 * 2 1 3 29 29 H 1.09002 * 109.47136 * 119.99956 * 2 1 3 30 30 H 1.00907 * 110.99766 * 278.95450 * 5 3 2 31 31 H 0.96996 * 119.99565 * 179.97438 * 11 10 8 32 32 H 1.07995 * 120.00114 * 359.97438 * 17 16 6 33 33 H 1.08004 * 120.00161 * 180.27289 * 18 17 16 34 34 H 1.08004 * 119.99710 * 179.83680 * 19 18 17 35 35 H 1.08004 * 120.00182 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.00395 * 180.02562 * 21 20 19 37 37 H 0.96998 * 119.99512 * 359.97438 * 23 22 3 38 38 H 0.96996 * 120.00324 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6514 2.0992 -1.2552 6 6 1.5726 3.5562 -1.0846 7 1 2.3421 3.8822 -0.3849 8 6 0.2146 3.9261 -0.5460 9 1 -0.6773 3.6096 -1.0664 10 6 0.1107 4.6686 0.6112 11 7 -1.0633 5.1110 1.0055 12 14 1.6377 5.0463 1.6187 13 1 2.2969 6.2634 1.0811 14 1 1.2524 5.2764 3.0343 15 1 2.5778 3.8993 1.5418 16 6 1.7857 4.2300 -2.4156 17 6 1.1284 3.7645 -3.5391 18 6 1.3206 4.3854 -4.7591 19 6 2.1770 5.4661 -4.8574 20 6 2.8383 5.9282 -3.7350 21 6 2.6428 5.3101 -2.5141 22 6 3.5419 1.4443 0.1238 23 7 4.1298 0.8911 1.2032 24 8 4.2216 1.9435 -0.7477 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2853 1.8563 -2.0017 31 1 -1.1363 5.6330 1.8197 32 1 0.4625 2.9178 -3.4631 33 1 0.8036 4.0246 -5.6361 34 1 2.3291 5.9495 -5.8112 35 1 3.5071 6.7728 -3.8117 36 1 3.1591 5.6714 -1.6370 37 1 3.5861 0.4921 1.9004 38 1 5.0964 0.8926 1.2831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379293652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:05 Heat of formation + Delta-G solvation = -44.391524 kcal Electronic energy + Delta-G solvation = -20352.935271 eV Core-core repulsion = 17386.648250 eV Total energy + Delta-G solvation = -2966.287021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05742 -39.93389 -37.22839 -35.35294 -34.50082 -33.57538 -31.66432 -31.21761 -28.85431 -27.07174 -24.21400 -23.32708 -23.02215 -21.49802 -21.04304 -19.09069 -18.64090 -17.89428 -17.56012 -16.60846 -16.34792 -16.01376 -15.56904 -15.50744 -15.15751 -14.81602 -14.72836 -14.24544 -14.01232 -13.88568 -13.31739 -13.23169 -12.94076 -12.85563 -12.54561 -12.18041 -11.92124 -11.78167 -11.70120 -11.63148 -11.42247 -11.03200 -10.79014 -10.69816 -9.67358 -9.40639 -9.13410 -8.31443 -6.30517 0.63468 0.68354 1.19375 1.25333 1.30994 1.56936 2.24638 2.61440 2.90912 3.17789 3.48026 3.91775 4.11490 4.19830 4.23896 4.30043 4.34409 4.42298 4.60188 4.65296 4.78011 4.85614 4.90601 5.04010 5.17915 5.23304 5.32589 5.37118 5.52129 5.70107 5.72335 5.73659 5.83788 5.91844 6.08453 6.26912 6.33770 6.49844 6.69625 6.84080 7.28579 7.32236 8.85219 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.009430 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.502789 B = 2968.686874 C = 3584.757007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C 0.066 3.934 4 H 0.089 0.911 5 N -0.645 5.645 6 C 0.224 3.776 7 H 0.004 0.996 8 C -0.469 4.469 9 H 0.043 0.957 10 C 0.026 3.974 11 N -0.936 5.936 12 Si 0.922 3.078 13 H -0.281 1.281 14 H -0.280 1.280 15 H -0.257 1.257 16 C -0.070 4.070 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.137 4.137 20 C -0.124 4.124 21 C -0.153 4.153 22 C 0.486 3.514 23 N -0.834 5.834 24 O -0.588 6.588 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.329 0.671 31 H 0.266 0.734 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.417 0.583 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -8.428 -2.386 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.049 4.049 4 H 0.106 0.894 5 N -0.275 5.275 6 C 0.116 3.884 7 H 0.022 0.978 8 C -0.508 4.508 9 H 0.061 0.939 10 C -0.173 4.173 11 N -0.576 5.576 12 Si 0.749 3.251 13 H -0.207 1.207 14 H -0.206 1.206 15 H -0.182 1.182 16 C -0.071 4.071 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.142 4.142 21 C -0.172 4.172 22 C 0.270 3.730 23 N -0.399 5.399 24 O -0.468 6.468 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.113 0.887 37 H 0.248 0.752 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 8.148 -8.080 -2.774 11.806 hybrid contribution 1.395 0.754 1.379 2.101 sum 9.542 -7.327 -1.394 12.111 Atomic orbital electron populations 1.21543 0.94767 1.01117 1.01787 1.21412 0.97139 0.91349 1.03014 1.21890 0.87925 0.99221 0.95820 0.89355 1.61082 1.52598 1.09020 1.04808 1.18481 0.94341 0.85259 0.90315 0.97810 1.20887 0.91467 1.30709 1.07705 0.93855 1.25668 0.97765 0.95345 0.98473 1.70009 1.25211 1.37530 1.24818 0.86160 0.81034 0.79213 0.78737 1.20667 1.20555 1.18152 1.20426 0.94412 0.96094 0.96130 1.21039 0.99348 1.00692 0.92466 1.21454 0.98746 0.96409 0.97503 1.21361 0.97655 0.97477 0.99035 1.21296 1.00496 1.00136 0.92290 1.21091 1.00112 0.97783 0.98207 1.22289 0.93095 0.75999 0.81616 1.43747 1.11917 1.61143 1.23093 1.90687 1.66531 1.47250 1.42326 0.94291 0.93422 0.91163 0.91282 0.88965 0.85210 0.92493 0.86354 0.83711 0.83164 0.84315 0.88712 0.75205 0.76347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 9.80 71.98 0.71 -3.29 16 2 C -0.09 -2.44 5.55 30.59 0.17 -2.27 16 3 C 0.07 2.36 2.21 44.17 0.10 2.45 16 4 H 0.09 3.56 6.61 -2.38 -0.02 3.55 16 5 N -0.64 -26.77 4.89 -481.06 -2.35 -29.12 16 6 C 0.22 10.77 1.83 43.42 0.08 10.85 16 7 H 0.00 0.21 3.97 -2.39 -0.01 0.20 16 8 C -0.47 -26.19 8.75 25.60 0.22 -25.96 16 9 H 0.04 2.71 8.06 -2.91 -0.02 2.69 16 10 C 0.03 1.49 5.47 84.66 0.46 1.95 16 11 N -0.94 -56.97 13.96 21.45 0.30 -56.67 16 12 Si 0.92 44.45 26.50 68.60 1.82 46.27 16 13 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.26 -11.63 6.22 99.48 0.62 -11.01 16 16 C -0.07 -3.17 4.65 -19.87 -0.09 -3.26 16 17 C -0.12 -4.75 9.08 22.27 0.20 -4.55 16 18 C -0.12 -4.10 10.05 22.27 0.22 -3.87 16 19 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 20 C -0.12 -4.33 10.05 22.27 0.22 -4.10 16 21 C -0.15 -6.58 9.67 22.27 0.22 -6.37 16 22 C 0.49 16.63 7.13 87.66 0.62 17.25 16 23 N -0.83 -19.13 8.74 -173.53 -1.52 -20.64 16 24 O -0.59 -24.84 16.48 -3.04 -0.05 -24.89 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.68 7.75 -2.39 -0.02 1.67 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.79 7.43 -2.39 -0.02 1.78 16 30 H 0.33 13.57 7.16 -89.69 -0.64 12.92 16 31 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.12 4.82 7.90 -2.91 -0.02 4.80 16 33 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 34 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.09 4.17 7.99 -2.91 -0.02 4.14 16 37 H 0.42 6.81 8.19 -92.71 -0.76 6.05 16 38 H 0.41 7.88 8.93 -92.71 -0.83 7.05 16 Total: -1.00 -71.93 316.15 0.33 -71.59 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -1.23 Total: 38.67 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 3.36 Total: -25.20 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.57 Total: -106.44 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.82 Total: 46.27 kcal Total: -71.93 0.33 -71.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379293652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.203 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds