Wall clock time and date at job start Mon Mar 30 2020 04:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47443 * 2 1 4 4 H 1.09001 * 109.47090 * 54.99885 * 3 2 1 5 5 N 1.46898 * 109.46843 * 295.00251 * 3 2 1 6 6 C 1.46900 * 111.00308 * 155.00128 * 5 3 2 7 7 H 1.09005 * 109.46750 * 324.99471 * 6 5 3 8 8 C 1.50698 * 109.47567 * 84.99487 * 6 5 3 9 9 H 1.08005 * 119.99694 * 54.72748 * 8 6 5 10 10 C 1.37876 * 120.00007 * 234.73334 * 8 6 5 11 11 N 1.31511 * 120.00098 * 5.09961 * 10 8 6 12 12 Si 1.86804 * 119.99882 * 185.10354 * 10 8 6 13 13 H 1.48502 * 109.46865 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47229 * 119.99800 * 12 10 8 15 15 H 1.48500 * 109.47305 * 240.00178 * 12 10 8 16 16 C 1.50696 * 109.47120 * 204.99824 * 6 5 3 17 17 C 1.38232 * 120.00148 * 312.52205 * 16 6 5 18 18 C 1.38239 * 120.00348 * 180.02562 * 17 16 6 19 19 C 1.38232 * 119.99522 * 0.07307 * 18 17 16 20 20 C 1.38232 * 120.00658 * 359.97438 * 19 18 17 21 21 C 1.38235 * 120.00143 * 132.65867 * 16 6 5 22 22 C 1.50702 * 109.47466 * 174.99966 * 3 2 1 23 23 N 1.34774 * 119.99843 * 299.99799 * 22 3 2 24 24 O 1.21276 * 119.99722 * 119.99598 * 22 3 2 25 25 H 1.08997 * 109.47293 * 60.00097 * 1 2 3 26 26 H 1.09006 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47449 * 300.00129 * 1 2 3 28 28 H 1.08997 * 109.47389 * 239.99251 * 2 1 3 29 29 H 1.09008 * 109.46859 * 119.99837 * 2 1 3 30 30 H 1.00901 * 111.00216 * 31.04395 * 5 3 2 31 31 H 0.96999 * 119.99812 * 179.97438 * 11 10 8 32 32 H 1.08000 * 119.99863 * 0.11189 * 17 16 6 33 33 H 1.08001 * 120.00278 * 180.34549 * 18 17 16 34 34 H 1.08010 * 119.99640 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.00196 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.99848 * 359.97438 * 21 16 6 37 37 H 0.97004 * 120.00293 * 0.02562 * 23 22 3 38 38 H 0.96997 * 119.99985 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6514 2.0992 -1.2552 6 6 1.5726 3.5561 -1.0847 7 1 1.2064 3.7855 -0.0840 8 6 2.9417 4.1583 -1.2689 9 1 3.5008 3.9622 -2.1720 10 6 3.4807 4.9593 -0.2846 11 7 2.8453 5.1171 0.8560 12 14 5.1133 5.8206 -0.5712 13 1 5.6207 5.4818 -1.9251 14 1 4.9231 7.2897 -0.4667 15 1 6.0944 5.3746 0.4505 16 6 0.6288 4.1314 -2.1090 17 6 0.7352 3.7555 -3.4350 18 6 -0.1302 4.2837 -4.3748 19 6 -1.1010 5.1889 -3.9887 20 6 -1.2067 5.5657 -2.6629 21 6 -0.3414 5.0373 -1.7232 22 6 3.5420 1.4442 0.1238 23 7 4.1297 0.8911 1.2032 24 8 4.2216 1.9434 -0.7478 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.7798 1.7281 -1.6027 31 1 3.2247 5.6803 1.5486 32 1 1.4935 3.0481 -3.7366 33 1 -0.0508 3.9857 -5.4098 34 1 -1.7769 5.6019 -4.7230 35 1 -1.9649 6.2732 -2.3614 36 1 -0.4234 5.3324 -0.6875 37 1 3.5861 0.4915 1.9001 38 1 5.0965 0.8919 1.2827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379293655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:07 Heat of formation + Delta-G solvation = -11.351650 kcal Electronic energy + Delta-G solvation = -20360.819035 eV Core-core repulsion = 17395.964730 eV Total energy + Delta-G solvation = -2964.854305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.92061 -38.18834 -35.55589 -33.62495 -32.43056 -31.44804 -30.07534 -29.60430 -26.65904 -25.39035 -22.62995 -21.77136 -21.52642 -19.91877 -19.10065 -16.66108 -16.51179 -16.02076 -15.75819 -14.94319 -14.63856 -14.12978 -13.82065 -13.75521 -13.49621 -13.13190 -12.61223 -12.47725 -12.28929 -12.06184 -11.83089 -11.64391 -11.36062 -10.93363 -10.85367 -10.65558 -10.45199 -10.23852 -10.10689 -9.57012 -9.37464 -8.73618 -8.61621 -8.36912 -8.11282 -7.77061 -7.20761 -5.90980 -3.84517 2.21575 2.24546 3.39988 3.46159 3.56983 3.83835 4.33041 4.55738 4.66630 5.16438 5.29477 5.38986 5.39171 5.58165 5.61794 5.71799 5.82454 5.93950 6.03113 6.12770 6.16671 6.22385 6.34664 6.42429 6.50721 6.57647 6.82424 6.90941 7.24593 7.26348 7.32368 7.59211 7.66557 7.85692 8.05759 8.07060 8.23593 8.34720 8.79050 9.23373 9.42639 9.73128 11.13913 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.009996 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.305055 B = 2800.553009 C = 4205.608607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.089 3.911 4 H 0.063 0.937 5 N -0.664 5.664 6 C 0.224 3.776 7 H 0.054 0.946 8 C -0.436 4.436 9 H 0.062 0.938 10 C 0.061 3.939 11 N -0.906 5.906 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.290 1.290 15 H -0.289 1.289 16 C -0.040 4.040 17 C -0.107 4.107 18 C -0.131 4.131 19 C -0.151 4.151 20 C -0.128 4.128 21 C -0.123 4.123 22 C 0.519 3.481 23 N -0.876 5.876 24 O -0.481 6.481 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.315 0.685 31 H 0.257 0.743 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.387 0.613 38 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -7.940 0.006 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.025 4.025 4 H 0.080 0.920 5 N -0.298 5.298 6 C 0.118 3.882 7 H 0.072 0.928 8 C -0.474 4.474 9 H 0.080 0.920 10 C -0.139 4.139 11 N -0.547 5.547 12 Si 0.724 3.276 13 H -0.197 1.197 14 H -0.217 1.217 15 H -0.215 1.215 16 C -0.041 4.041 17 C -0.126 4.126 18 C -0.149 4.149 19 C -0.170 4.170 20 C -0.146 4.146 21 C -0.141 4.141 22 C 0.301 3.699 23 N -0.443 5.443 24 O -0.350 6.350 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.214 0.786 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.272 -7.424 -0.814 9.142 hybrid contribution 0.313 0.616 0.977 1.197 sum -4.959 -6.808 0.163 8.424 Atomic orbital electron populations 1.21814 0.95712 1.01330 1.02204 1.21681 0.96032 0.96104 1.02275 1.21202 0.92729 0.94049 0.94502 0.91979 1.60773 1.35460 1.06899 1.26621 1.18705 0.94151 0.82329 0.93034 0.92805 1.20885 0.98538 1.24795 1.03231 0.91972 1.24878 0.97153 0.96894 0.94941 1.69877 1.39419 1.40106 1.05289 0.86467 0.84232 0.78430 0.78462 1.19657 1.21661 1.21525 1.20725 0.92397 0.95214 0.95807 1.21064 0.98443 1.00251 0.92810 1.21044 0.96707 0.98446 0.98734 1.20841 0.99984 1.00338 0.95793 1.20963 0.99725 1.00398 0.93550 1.21079 0.95532 0.98189 0.99325 1.20460 0.90914 0.77162 0.81317 1.43961 1.10309 1.65133 1.24848 1.90741 1.64813 1.39911 1.39577 0.92249 0.92792 0.92726 0.91105 0.91866 0.86543 0.93365 0.85942 0.87454 0.87655 0.87484 0.86733 0.78608 0.78172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.74 37.16 0.36 -1.53 16 2 C -0.12 -1.72 5.47 -26.74 -0.15 -1.86 16 3 C 0.09 1.69 2.45 -68.87 -0.17 1.52 16 4 H 0.06 1.27 7.43 -51.93 -0.39 0.88 16 5 N -0.66 -13.91 5.42 -103.40 -0.56 -14.47 16 6 C 0.22 5.39 2.53 -70.02 -0.18 5.21 16 7 H 0.05 1.43 6.00 -51.93 -0.31 1.12 16 8 C -0.44 -12.08 5.54 -34.44 -0.19 -12.27 16 9 H 0.06 1.87 7.78 -52.48 -0.41 1.46 16 10 C 0.06 1.73 5.45 -17.82 -0.10 1.64 16 11 N -0.91 -25.77 12.62 55.43 0.70 -25.07 16 12 Si 0.89 23.19 29.54 -169.99 -5.02 18.17 16 13 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 16 C -0.04 -0.88 4.64 -104.63 -0.48 -1.37 16 17 C -0.11 -2.18 9.10 -39.58 -0.36 -2.54 16 18 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 19 C -0.15 -2.56 10.05 -39.59 -0.40 -2.96 16 20 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 21 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 22 C 0.52 10.80 7.15 -10.99 -0.08 10.73 16 23 N -0.88 -13.83 8.74 31.22 0.27 -13.56 16 24 O -0.48 -12.37 14.65 5.56 0.08 -12.29 16 25 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.74 7.43 -51.92 -0.39 0.36 16 30 H 0.31 5.91 5.92 -39.29 -0.23 5.68 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 32 H 0.12 2.54 7.95 -52.49 -0.42 2.13 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 2.40 7.99 -52.49 -0.42 1.99 16 37 H 0.39 4.76 8.19 -40.82 -0.33 4.43 16 38 H 0.39 5.77 8.93 -40.82 -0.36 5.40 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -32.03 315.10 -7.96 -40.00 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.26 Total: 14.25 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.92 Total: -11.77 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.41 Total: -53.10 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.03 -7.96 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379293655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.644 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds