Wall clock time and date at job start Mon Mar 30 2020 04:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47443 * 2 1 4 4 H 1.09001 * 109.47090 * 54.99885 * 3 2 1 5 5 N 1.46898 * 109.46843 * 295.00251 * 3 2 1 6 6 C 1.46900 * 111.00308 * 155.00128 * 5 3 2 7 7 H 1.09005 * 109.46750 * 324.99471 * 6 5 3 8 8 C 1.50698 * 109.47567 * 84.99487 * 6 5 3 9 9 H 1.08005 * 119.99694 * 54.72748 * 8 6 5 10 10 C 1.37876 * 120.00007 * 234.73334 * 8 6 5 11 11 N 1.31511 * 120.00098 * 5.09961 * 10 8 6 12 12 Si 1.86804 * 119.99882 * 185.10354 * 10 8 6 13 13 H 1.48502 * 109.46865 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47229 * 119.99800 * 12 10 8 15 15 H 1.48500 * 109.47305 * 240.00178 * 12 10 8 16 16 C 1.50696 * 109.47120 * 204.99824 * 6 5 3 17 17 C 1.38232 * 120.00148 * 312.52205 * 16 6 5 18 18 C 1.38239 * 120.00348 * 180.02562 * 17 16 6 19 19 C 1.38232 * 119.99522 * 0.07307 * 18 17 16 20 20 C 1.38232 * 120.00658 * 359.97438 * 19 18 17 21 21 C 1.38235 * 120.00143 * 132.65867 * 16 6 5 22 22 C 1.50702 * 109.47466 * 174.99966 * 3 2 1 23 23 N 1.34774 * 119.99843 * 299.99799 * 22 3 2 24 24 O 1.21276 * 119.99722 * 119.99598 * 22 3 2 25 25 H 1.08997 * 109.47293 * 60.00097 * 1 2 3 26 26 H 1.09006 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47449 * 300.00129 * 1 2 3 28 28 H 1.08997 * 109.47389 * 239.99251 * 2 1 3 29 29 H 1.09008 * 109.46859 * 119.99837 * 2 1 3 30 30 H 1.00901 * 111.00216 * 31.04395 * 5 3 2 31 31 H 0.96999 * 119.99812 * 179.97438 * 11 10 8 32 32 H 1.08000 * 119.99863 * 0.11189 * 17 16 6 33 33 H 1.08001 * 120.00278 * 180.34549 * 18 17 16 34 34 H 1.08010 * 119.99640 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.00196 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.99848 * 359.97438 * 21 16 6 37 37 H 0.97004 * 120.00293 * 0.02562 * 23 22 3 38 38 H 0.96997 * 119.99985 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6514 2.0992 -1.2552 6 6 1.5726 3.5561 -1.0847 7 1 1.2064 3.7855 -0.0840 8 6 2.9417 4.1583 -1.2689 9 1 3.5008 3.9622 -2.1720 10 6 3.4807 4.9593 -0.2846 11 7 2.8453 5.1171 0.8560 12 14 5.1133 5.8206 -0.5712 13 1 5.6207 5.4818 -1.9251 14 1 4.9231 7.2897 -0.4667 15 1 6.0944 5.3746 0.4505 16 6 0.6288 4.1314 -2.1090 17 6 0.7352 3.7555 -3.4350 18 6 -0.1302 4.2837 -4.3748 19 6 -1.1010 5.1889 -3.9887 20 6 -1.2067 5.5657 -2.6629 21 6 -0.3414 5.0373 -1.7232 22 6 3.5420 1.4442 0.1238 23 7 4.1297 0.8911 1.2032 24 8 4.2216 1.9434 -0.7478 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.7798 1.7281 -1.6027 31 1 3.2247 5.6803 1.5486 32 1 1.4935 3.0481 -3.7366 33 1 -0.0508 3.9857 -5.4098 34 1 -1.7769 5.6019 -4.7230 35 1 -1.9649 6.2732 -2.3614 36 1 -0.4234 5.3324 -0.6875 37 1 3.5861 0.4915 1.9001 38 1 5.0965 0.8919 1.2827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379293655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:07 Heat of formation + Delta-G solvation = -34.846532 kcal Electronic energy + Delta-G solvation = -20361.837850 eV Core-core repulsion = 17395.964730 eV Total energy + Delta-G solvation = -2965.873120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53180 -39.73891 -37.15611 -35.30601 -34.08206 -33.20493 -31.56537 -31.03127 -28.31536 -27.15940 -24.36368 -23.19727 -22.90094 -21.56672 -20.65237 -18.46799 -18.09912 -17.60268 -17.38667 -16.69858 -16.24720 -15.82572 -15.39440 -15.21927 -14.95188 -14.65492 -14.34578 -14.04805 -13.81457 -13.67340 -13.30012 -13.14518 -12.89655 -12.78079 -12.63853 -12.17582 -11.95072 -11.79703 -11.67363 -11.47905 -11.20791 -10.57164 -10.33882 -10.21936 -9.60369 -9.34865 -8.96908 -8.01816 -6.00793 0.71097 0.74479 1.30330 1.32498 1.45964 2.20318 2.45836 2.88064 3.09184 3.32258 3.74106 4.06019 4.18892 4.25745 4.31955 4.36180 4.44703 4.58605 4.61946 4.78134 4.90095 4.92445 4.97274 5.09967 5.23216 5.25325 5.37176 5.43093 5.46815 5.78530 5.81266 5.84317 6.04816 6.22677 6.23202 6.37453 6.44286 6.86970 7.00882 7.13873 7.57657 7.87213 8.99487 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.009996 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.305055 B = 2800.553009 C = 4205.608607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.088 3.912 4 H 0.046 0.954 5 N -0.668 5.668 6 C 0.236 3.764 7 H 0.023 0.977 8 C -0.431 4.431 9 H 0.029 0.971 10 C 0.023 3.977 11 N -0.926 5.926 12 Si 0.931 3.069 13 H -0.283 1.283 14 H -0.280 1.280 15 H -0.288 1.288 16 C -0.068 4.068 17 C -0.120 4.120 18 C -0.125 4.125 19 C -0.139 4.139 20 C -0.124 4.124 21 C -0.142 4.142 22 C 0.510 3.490 23 N -0.854 5.854 24 O -0.541 6.541 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.328 0.672 31 H 0.255 0.745 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.408 0.592 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 -8.594 -0.811 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.026 4.026 4 H 0.063 0.937 5 N -0.302 5.302 6 C 0.128 3.872 7 H 0.041 0.959 8 C -0.470 4.470 9 H 0.048 0.952 10 C -0.174 4.174 11 N -0.569 5.569 12 Si 0.760 3.240 13 H -0.208 1.208 14 H -0.206 1.206 15 H -0.215 1.215 16 C -0.069 4.069 17 C -0.139 4.139 18 C -0.143 4.143 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.161 4.161 22 C 0.294 3.706 23 N -0.421 5.421 24 O -0.415 6.415 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.149 0.851 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.117 0.883 37 H 0.238 0.762 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.090 -8.113 -1.587 10.891 hybrid contribution 0.805 0.745 1.174 1.607 sum -6.285 -7.368 -0.413 9.694 Atomic orbital electron populations 1.21788 0.94187 1.03025 1.01641 1.21652 0.97256 0.92512 1.03584 1.21283 0.91710 0.96805 0.92809 0.93667 1.60494 1.36184 1.05485 1.28004 1.18359 0.92683 0.83875 0.92240 0.95942 1.20838 0.99970 1.24577 1.01629 0.95238 1.25290 0.99034 0.97913 0.95159 1.69953 1.40166 1.41156 1.05598 0.85910 0.82273 0.78273 0.77550 1.20821 1.20646 1.21473 1.20579 0.93564 0.96665 0.96091 1.21018 0.99247 1.00887 0.92737 1.21394 0.95602 0.97661 0.99670 1.21320 0.99520 0.98783 0.96050 1.21301 0.99231 1.00072 0.93548 1.21104 0.96636 0.98797 0.99524 1.20922 0.91666 0.76449 0.81544 1.43689 1.11020 1.63476 1.23884 1.90714 1.66000 1.42850 1.41907 0.93396 0.89890 0.92747 0.91277 0.88978 0.85117 0.93573 0.87328 0.84220 0.83445 0.84417 0.88267 0.76241 0.77334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.74 71.98 0.70 -2.69 16 2 C -0.11 -2.96 5.47 30.59 0.17 -2.80 16 3 C 0.09 3.37 2.45 44.17 0.11 3.48 16 4 H 0.05 1.91 7.43 -2.39 -0.02 1.89 16 5 N -0.67 -28.87 5.42 -481.05 -2.61 -31.47 16 6 C 0.24 11.84 2.53 43.42 0.11 11.95 16 7 H 0.02 1.27 6.00 -2.38 -0.01 1.25 16 8 C -0.43 -24.98 5.54 25.60 0.14 -24.84 16 9 H 0.03 1.87 7.78 -2.91 -0.02 1.85 16 10 C 0.02 1.35 5.45 84.65 0.46 1.81 16 11 N -0.93 -54.46 12.62 21.45 0.27 -54.19 16 12 Si 0.93 48.83 29.54 68.60 2.03 50.85 16 13 H -0.28 -15.17 7.11 99.48 0.71 -14.46 16 14 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 15 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 16 C -0.07 -3.05 4.64 -19.87 -0.09 -3.15 16 17 C -0.12 -4.88 9.10 22.27 0.20 -4.68 16 18 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 19 C -0.14 -4.13 10.05 22.27 0.22 -3.91 16 20 C -0.12 -4.10 10.05 22.27 0.22 -3.88 16 21 C -0.14 -5.89 9.67 22.27 0.22 -5.67 16 22 C 0.51 21.61 7.15 87.66 0.63 22.24 16 23 N -0.85 -26.45 8.74 -173.54 -1.52 -27.96 16 24 O -0.54 -28.82 14.65 -3.02 -0.04 -28.86 16 25 H 0.05 1.20 6.43 -2.39 -0.02 1.18 16 26 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 1.90 7.43 -2.38 -0.02 1.89 16 30 H 0.33 12.57 5.92 -89.69 -0.53 12.03 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.11 4.62 7.95 -2.91 -0.02 4.60 16 33 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 36 H 0.10 4.32 7.99 -2.91 -0.02 4.30 16 37 H 0.41 9.34 8.19 -92.71 -0.76 8.58 16 38 H 0.40 11.52 8.93 -92.71 -0.83 10.69 16 Total: -1.00 -73.16 315.10 0.41 -72.75 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -1.03 Total: 34.88 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 3.31 Total: -16.00 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -3.85 Total: -113.62 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.04 Total: -28.86 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.85 kcal Total: -73.16 0.41 -72.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379293655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.903 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds