Wall clock time and date at job start Mon Mar 30 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47957 * 110.99955 * 2 1 4 4 C 1.53936 * 86.18002 * 222.41582 * 3 2 1 5 5 N 1.46907 * 113.73146 * 138.07985 * 4 3 2 6 6 C 1.46901 * 110.99930 * 156.90020 * 5 4 3 7 7 C 1.50695 * 109.46891 * 179.97438 * 6 5 4 8 8 C 1.38299 * 119.93247 * 90.00141 * 7 6 5 9 9 C 1.38101 * 120.07425 * 179.97438 * 8 7 6 10 10 C 1.38886 * 119.92536 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12 18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12 19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38106 * 119.92542 * 359.44577 * 20 10 9 22 22 C 1.48186 * 111.06956 * 260.56984 * 2 1 3 23 23 H 1.08999 * 109.47277 * 59.99857 * 1 2 3 24 24 H 1.08995 * 109.46984 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46908 * 299.99898 * 1 2 3 26 26 H 1.09002 * 113.75968 * 108.09747 * 3 2 1 27 27 H 1.08995 * 113.86001 * 336.74826 * 3 2 1 28 28 H 1.08998 * 113.73610 * 269.25713 * 4 3 2 29 29 H 1.00900 * 111.00053 * 32.94482 * 5 4 3 30 30 H 1.08998 * 109.46720 * 60.00340 * 6 5 4 31 31 H 1.08996 * 109.47268 * 299.99941 * 6 5 4 32 32 H 1.07999 * 119.96503 * 0.02562 * 8 7 6 33 33 H 1.07992 * 120.03608 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 36 36 H 1.07997 * 119.96326 * 180.27708 * 21 20 10 37 37 H 1.09004 * 113.76437 * 23.23408 * 22 2 1 38 38 H 1.09008 * 113.82194 * 251.80948 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2516 1.8180 -2.1422 6 6 4.5591 1.5823 -2.7690 7 6 4.7592 2.5614 -3.8969 8 6 5.3559 3.7846 -3.6513 9 6 5.5412 4.6838 -4.6829 10 6 5.1270 4.3588 -5.9681 11 8 5.3082 5.2404 -6.9844 12 6 5.9983 6.3643 -6.7040 13 1 6.3078 6.5692 -5.6899 14 6 6.3105 7.2572 -7.7179 15 7 5.9338 7.0075 -8.9534 16 14 7.2672 8.8139 -7.3297 17 1 8.7222 8.5454 -7.4565 18 1 6.8767 9.8851 -8.2811 19 1 6.9632 9.2489 -5.9427 20 6 4.5224 3.1323 -6.2104 21 6 4.3451 2.2351 -5.1756 22 6 2.0018 -0.2266 -1.3641 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9483 27 1 1.3022 2.1211 -0.3935 28 1 3.9459 0.5068 -0.5953 29 1 3.1677 2.7735 -1.8290 30 1 4.5965 0.5656 -3.1600 31 1 5.3468 1.7157 -2.0276 32 1 5.6781 4.0366 -2.6518 33 1 6.0076 5.6386 -4.4905 34 1 6.1519 7.6323 -9.6626 35 1 4.1953 2.8786 -7.2079 36 1 3.8791 1.2793 -5.3642 37 1 1.3043 0.0405 -2.1580 38 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383067524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:18 Heat of formation + Delta-G solvation = 36.568586 kcal Electronic energy + Delta-G solvation = -18639.582849 eV Core-core repulsion = 15676.806521 eV Total energy + Delta-G solvation = -2962.776328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05921 -39.02415 -36.89569 -34.62859 -32.30080 -30.51993 -30.14867 -28.50636 -26.34450 -25.60240 -24.32741 -22.74765 -21.94618 -20.48669 -19.81385 -17.98624 -17.04006 -16.37825 -16.02599 -15.48864 -14.79092 -14.63695 -14.42814 -13.98714 -13.86859 -13.55019 -13.51054 -12.90273 -12.77098 -12.67901 -12.26538 -12.12299 -11.73611 -11.60918 -11.28202 -11.09626 -10.94061 -10.73640 -10.64451 -10.47384 -10.42299 -9.34350 -9.11386 -8.84417 -8.45424 -8.17063 -7.18781 -6.46003 -4.04893 2.22531 2.27779 3.11718 3.12703 3.17367 3.70903 3.95746 4.17273 4.29594 4.63266 4.85132 4.91949 5.08335 5.13121 5.20306 5.28600 5.32961 5.35797 5.40311 5.43465 5.60636 5.61699 5.71219 5.81131 5.87003 5.92444 6.05321 6.21474 6.42759 6.70792 6.77257 6.89810 7.01220 7.07960 7.26004 7.32246 7.42354 7.45692 7.83037 7.99105 8.99648 9.70132 10.72096 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043680 B = 0.003189 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.872073 B = 8778.303793 C = 8993.040457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.488 5.488 3 C -0.003 4.003 4 C 0.054 3.946 5 N -0.675 5.675 6 C 0.118 3.882 7 C -0.186 4.186 8 C -0.066 4.066 9 C -0.235 4.235 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.195 4.195 21 C -0.052 4.052 22 C 0.012 3.988 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.344 0.656 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.270 0.730 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -9.901 14.804 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.211 5.211 3 C -0.133 4.133 4 C -0.057 4.057 5 N -0.307 5.307 6 C -0.010 4.010 7 C -0.188 4.188 8 C -0.084 4.084 9 C -0.254 4.254 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.192 1.192 20 C -0.214 4.214 21 C -0.071 4.071 22 C -0.117 4.117 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.163 0.837 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.121 0.879 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.834 -10.614 14.411 18.825 hybrid contribution 0.688 1.738 0.255 1.887 sum -5.146 -8.876 14.666 17.899 Atomic orbital electron populations 1.22836 0.89531 1.02304 1.01133 1.68452 1.09219 1.18188 1.25232 1.24218 0.97414 0.92023 0.99614 1.23439 0.97187 0.94501 0.90563 1.60758 1.32787 1.07738 1.29426 1.20674 0.88232 0.98228 0.93883 1.19116 1.08718 0.96639 0.94284 1.20589 0.97331 0.93065 0.97459 1.21119 1.09628 1.01739 0.92939 1.19409 0.92613 0.89648 0.88107 1.83980 1.64203 1.27785 1.32151 1.21325 1.33596 0.96092 0.95826 0.89090 1.25293 0.97472 0.99283 0.94478 1.70037 1.43307 1.36525 0.99891 0.85713 0.79340 0.79789 0.78591 1.19875 1.20246 1.19213 1.20228 1.08234 0.93347 0.99605 1.20465 0.97026 0.97843 0.91723 1.24190 0.97335 0.99579 0.90619 0.94405 0.91256 0.91561 0.89574 0.90472 0.90312 0.83657 0.91079 0.95261 0.87930 0.85650 0.92004 0.86570 0.87072 0.90172 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.07 0.58 0.51 16 2 N -0.49 -4.90 6.55 -246.55 -1.62 -6.52 16 3 C 0.00 -0.03 7.58 -2.76 -0.02 -0.05 16 4 C 0.05 0.55 4.30 -69.41 -0.30 0.25 16 5 N -0.67 -8.08 6.55 -109.24 -0.72 -8.80 16 6 C 0.12 1.54 5.66 -4.98 -0.03 1.52 16 7 C -0.19 -3.10 5.40 -104.58 -0.56 -3.66 16 8 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 9 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 12 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 13 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 14 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 15 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 16 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 21 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 22 C 0.01 0.12 7.79 -2.64 -0.02 0.10 16 23 H 0.04 0.32 7.63 -51.93 -0.40 -0.07 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 28 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 29 H 0.34 4.09 8.56 -39.29 -0.34 3.75 16 30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.03 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 38 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -29.97 319.64 -9.17 -39.14 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.45 Total: 5.90 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.94 Total: -20.32 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -1.57 Total: -39.88 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.09 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.97 -9.17 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383067524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.710 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds