Wall clock time and date at job start Mon Mar 30 2020 05:01:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47957 * 110.99955 * 2 1
4 4 C 1.53936 * 86.18002 * 222.41582 * 3 2 1
5 5 N 1.46907 * 113.73146 * 138.07985 * 4 3 2
6 6 C 1.46901 * 110.99930 * 156.90020 * 5 4 3
7 7 C 1.50695 * 109.46891 * 179.97438 * 6 5 4
8 8 C 1.38299 * 119.93247 * 90.00141 * 7 6 5
9 9 C 1.38101 * 120.07425 * 179.97438 * 8 7 6
10 10 C 1.38886 * 119.92536 * 0.02562 * 9 8 7
11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8
12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9
13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10
14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10
15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11
16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11
17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12
18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12
19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12
20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8
21 21 C 1.38106 * 119.92542 * 359.44577 * 20 10 9
22 22 C 1.48186 * 111.06956 * 260.56984 * 2 1 3
23 23 H 1.08999 * 109.47277 * 59.99857 * 1 2 3
24 24 H 1.08995 * 109.46984 * 179.97438 * 1 2 3
25 25 H 1.08997 * 109.46908 * 299.99898 * 1 2 3
26 26 H 1.09002 * 113.75968 * 108.09747 * 3 2 1
27 27 H 1.08995 * 113.86001 * 336.74826 * 3 2 1
28 28 H 1.08998 * 113.73610 * 269.25713 * 4 3 2
29 29 H 1.00900 * 111.00053 * 32.94482 * 5 4 3
30 30 H 1.08998 * 109.46720 * 60.00340 * 6 5 4
31 31 H 1.08996 * 109.47268 * 299.99941 * 6 5 4
32 32 H 1.07999 * 119.96503 * 0.02562 * 8 7 6
33 33 H 1.07992 * 120.03608 * 180.02562 * 9 8 7
34 34 H 0.96996 * 120.00178 * 179.97438 * 15 14 12
35 35 H 1.07996 * 120.03745 * 179.72497 * 20 10 9
36 36 H 1.07997 * 119.96326 * 180.27708 * 21 20 10
37 37 H 1.09004 * 113.76437 * 23.23408 * 22 2 1
38 38 H 1.09008 * 113.82194 * 251.80948 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9993 1.3813 0.0000
4 6 3.0211 0.8792 -1.0360
5 7 3.2516 1.8180 -2.1422
6 6 4.5591 1.5823 -2.7690
7 6 4.7592 2.5614 -3.8969
8 6 5.3559 3.7846 -3.6513
9 6 5.5412 4.6838 -4.6829
10 6 5.1270 4.3588 -5.9681
11 8 5.3082 5.2404 -6.9844
12 6 5.9983 6.3643 -6.7040
13 1 6.3078 6.5692 -5.6899
14 6 6.3105 7.2572 -7.7179
15 7 5.9338 7.0075 -8.9534
16 14 7.2672 8.8139 -7.3297
17 1 8.7222 8.5454 -7.4565
18 1 6.8767 9.8851 -8.2811
19 1 6.9632 9.2489 -5.9427
20 6 4.5224 3.1323 -6.2104
21 6 4.3451 2.2351 -5.1756
22 6 2.0018 -0.2266 -1.3641
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 2.4460 1.6802 0.9483
27 1 1.3022 2.1211 -0.3935
28 1 3.9459 0.5068 -0.5953
29 1 3.1677 2.7735 -1.8290
30 1 4.5965 0.5656 -3.1600
31 1 5.3468 1.7157 -2.0276
32 1 5.6781 4.0366 -2.6518
33 1 6.0076 5.6386 -4.4905
34 1 6.1519 7.6323 -9.6626
35 1 4.1953 2.8786 -7.2079
36 1 3.8791 1.2793 -5.3642
37 1 1.3043 0.0405 -2.1580
38 1 2.4505 -1.2101 -1.5038
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000383067524.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:18
Heat of formation + Delta-G solvation = 36.568586 kcal
Electronic energy + Delta-G solvation = -18639.582849 eV
Core-core repulsion = 15676.806521 eV
Total energy + Delta-G solvation = -2962.776328 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.05921 -39.02415 -36.89569 -34.62859 -32.30080 -30.51993 -30.14867 -28.50636
-26.34450 -25.60240 -24.32741 -22.74765 -21.94618 -20.48669 -19.81385 -17.98624
-17.04006 -16.37825 -16.02599 -15.48864 -14.79092 -14.63695 -14.42814 -13.98714
-13.86859 -13.55019 -13.51054 -12.90273 -12.77098 -12.67901 -12.26538 -12.12299
-11.73611 -11.60918 -11.28202 -11.09626 -10.94061 -10.73640 -10.64451 -10.47384
-10.42299 -9.34350 -9.11386 -8.84417 -8.45424 -8.17063 -7.18781 -6.46003
-4.04893 2.22531 2.27779 3.11718 3.12703 3.17367 3.70903 3.95746
4.17273 4.29594 4.63266 4.85132 4.91949 5.08335 5.13121 5.20306
5.28600 5.32961 5.35797 5.40311 5.43465 5.60636 5.61699 5.71219
5.81131 5.87003 5.92444 6.05321 6.21474 6.42759 6.70792 6.77257
6.89810 7.01220 7.07960 7.26004 7.32246 7.42354 7.45692 7.83037
7.99105 8.99648 9.70132 10.72096
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.043680 B = 0.003189 C = 0.003113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 640.872073 B = 8778.303793 C = 8993.040457
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.009 4.009
2 N -0.488 5.488
3 C -0.003 4.003
4 C 0.054 3.946
5 N -0.675 5.675
6 C 0.118 3.882
7 C -0.186 4.186
8 C -0.066 4.066
9 C -0.235 4.235
10 C 0.156 3.844
11 O -0.178 6.178
12 C -0.392 4.392
13 H 0.092 0.908
14 C 0.039 3.961
15 N -0.863 5.863
16 Si 0.941 3.059
17 H -0.273 1.273
18 H -0.277 1.277
19 H -0.268 1.268
20 C -0.195 4.195
21 C -0.052 4.052
22 C 0.012 3.988
23 H 0.037 0.963
24 H 0.069 0.931
25 H 0.066 0.934
26 H 0.086 0.914
27 H 0.077 0.923
28 H 0.079 0.921
29 H 0.344 0.656
30 H 0.071 0.929
31 H 0.029 0.971
32 H 0.103 0.897
33 H 0.126 0.874
34 H 0.270 0.730
35 H 0.116 0.884
36 H 0.111 0.889
37 H 0.080 0.920
38 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.587 -9.901 14.804 18.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 N -0.211 5.211
3 C -0.133 4.133
4 C -0.057 4.057
5 N -0.307 5.307
6 C -0.010 4.010
7 C -0.188 4.188
8 C -0.084 4.084
9 C -0.254 4.254
10 C 0.102 3.898
11 O -0.081 6.081
12 C -0.468 4.468
13 H 0.109 0.891
14 C -0.165 4.165
15 N -0.498 5.498
16 Si 0.766 3.234
17 H -0.199 1.199
18 H -0.202 1.202
19 H -0.192 1.192
20 C -0.214 4.214
21 C -0.071 4.071
22 C -0.117 4.117
23 H 0.056 0.944
24 H 0.087 0.913
25 H 0.084 0.916
26 H 0.104 0.896
27 H 0.095 0.905
28 H 0.097 0.903
29 H 0.163 0.837
30 H 0.089 0.911
31 H 0.047 0.953
32 H 0.121 0.879
33 H 0.143 0.857
34 H 0.080 0.920
35 H 0.134 0.866
36 H 0.129 0.871
37 H 0.098 0.902
38 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -5.834 -10.614 14.411 18.825
hybrid contribution 0.688 1.738 0.255 1.887
sum -5.146 -8.876 14.666 17.899
Atomic orbital electron populations
1.22836 0.89531 1.02304 1.01133 1.68452 1.09219 1.18188 1.25232
1.24218 0.97414 0.92023 0.99614 1.23439 0.97187 0.94501 0.90563
1.60758 1.32787 1.07738 1.29426 1.20674 0.88232 0.98228 0.93883
1.19116 1.08718 0.96639 0.94284 1.20589 0.97331 0.93065 0.97459
1.21119 1.09628 1.01739 0.92939 1.19409 0.92613 0.89648 0.88107
1.83980 1.64203 1.27785 1.32151 1.21325 1.33596 0.96092 0.95826
0.89090 1.25293 0.97472 0.99283 0.94478 1.70037 1.43307 1.36525
0.99891 0.85713 0.79340 0.79789 0.78591 1.19875 1.20246 1.19213
1.20228 1.08234 0.93347 0.99605 1.20465 0.97026 0.97843 0.91723
1.24190 0.97335 0.99579 0.90619 0.94405 0.91256 0.91561 0.89574
0.90472 0.90312 0.83657 0.91079 0.95261 0.87930 0.85650 0.92004
0.86570 0.87072 0.90172 0.89750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.07 9.65 60.07 0.58 0.51 16
2 N -0.49 -4.90 6.55 -246.55 -1.62 -6.52 16
3 C 0.00 -0.03 7.58 -2.76 -0.02 -0.05 16
4 C 0.05 0.55 4.30 -69.41 -0.30 0.25 16
5 N -0.67 -8.08 6.55 -109.24 -0.72 -8.80 16
6 C 0.12 1.54 5.66 -4.98 -0.03 1.52 16
7 C -0.19 -3.10 5.40 -104.58 -0.56 -3.66 16
8 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16
9 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16
10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16
11 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16
12 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16
13 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16
14 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16
15 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16
16 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16
17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16
19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16
20 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16
21 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16
22 C 0.01 0.12 7.79 -2.64 -0.02 0.10 16
23 H 0.04 0.32 7.63 -51.93 -0.40 -0.07 16
24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16
27 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16
28 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16
29 H 0.34 4.09 8.56 -39.29 -0.34 3.75 16
30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16
31 H 0.03 0.36 8.07 -51.93 -0.42 -0.06 16
32 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16
33 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16
34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
35 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16
36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16
37 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16
38 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16
LS Contribution 319.64 15.07 4.82 4.82
Total: -1.00 -29.97 319.64 -9.17 -39.14
By element:
Atomic # 1 Polarization: 11.35 SS G_CDS: -5.45 Total: 5.90 kcal
Atomic # 6 Polarization: -18.38 SS G_CDS: -1.94 Total: -20.32 kcal
Atomic # 7 Polarization: -38.31 SS G_CDS: -1.57 Total: -39.88 kcal
Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.09 kcal
Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal
Total LS contribution 4.82 Total: 4.82 kcal
Total: -29.97 -9.17 -39.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383067524.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.710 kcal
(2) G-P(sol) polarization free energy of solvation -29.972 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.738 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds