Wall clock time and date at job start Mon Mar 30 2020 05:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47957 * 110.99955 * 2 1 4 4 C 1.53936 * 86.18002 * 222.41582 * 3 2 1 5 5 N 1.46907 * 113.73146 * 138.07985 * 4 3 2 6 6 C 1.46901 * 110.99930 * 156.90020 * 5 4 3 7 7 C 1.50695 * 109.46891 * 179.97438 * 6 5 4 8 8 C 1.38299 * 119.93247 * 90.00141 * 7 6 5 9 9 C 1.38101 * 120.07425 * 179.97438 * 8 7 6 10 10 C 1.38886 * 119.92536 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12 18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12 19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38106 * 119.92542 * 359.44577 * 20 10 9 22 22 C 1.48186 * 111.06956 * 260.56984 * 2 1 3 23 23 H 1.08999 * 109.47277 * 59.99857 * 1 2 3 24 24 H 1.08995 * 109.46984 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46908 * 299.99898 * 1 2 3 26 26 H 1.09002 * 113.75968 * 108.09747 * 3 2 1 27 27 H 1.08995 * 113.86001 * 336.74826 * 3 2 1 28 28 H 1.08998 * 113.73610 * 269.25713 * 4 3 2 29 29 H 1.00900 * 111.00053 * 32.94482 * 5 4 3 30 30 H 1.08998 * 109.46720 * 60.00340 * 6 5 4 31 31 H 1.08996 * 109.47268 * 299.99941 * 6 5 4 32 32 H 1.07999 * 119.96503 * 0.02562 * 8 7 6 33 33 H 1.07992 * 120.03608 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 36 36 H 1.07997 * 119.96326 * 180.27708 * 21 20 10 37 37 H 1.09004 * 113.76437 * 23.23408 * 22 2 1 38 38 H 1.09008 * 113.82194 * 251.80948 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2516 1.8180 -2.1422 6 6 4.5591 1.5823 -2.7690 7 6 4.7592 2.5614 -3.8969 8 6 5.3559 3.7846 -3.6513 9 6 5.5412 4.6838 -4.6829 10 6 5.1270 4.3588 -5.9681 11 8 5.3082 5.2404 -6.9844 12 6 5.9983 6.3643 -6.7040 13 1 6.3078 6.5692 -5.6899 14 6 6.3105 7.2572 -7.7179 15 7 5.9338 7.0075 -8.9534 16 14 7.2672 8.8139 -7.3297 17 1 8.7222 8.5454 -7.4565 18 1 6.8767 9.8851 -8.2811 19 1 6.9632 9.2489 -5.9427 20 6 4.5224 3.1323 -6.2104 21 6 4.3451 2.2351 -5.1756 22 6 2.0018 -0.2266 -1.3641 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9483 27 1 1.3022 2.1211 -0.3935 28 1 3.9459 0.5068 -0.5953 29 1 3.1677 2.7735 -1.8290 30 1 4.5965 0.5656 -3.1600 31 1 5.3468 1.7157 -2.0276 32 1 5.6781 4.0366 -2.6518 33 1 6.0076 5.6386 -4.4905 34 1 6.1519 7.6323 -9.6626 35 1 4.1953 2.8786 -7.2079 36 1 3.8791 1.2793 -5.3642 37 1 1.3043 0.0405 -2.1580 38 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383067524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:17 Heat of formation + Delta-G solvation = 14.072212 kcal Electronic energy + Delta-G solvation = -18640.558365 eV Core-core repulsion = 15676.806521 eV Total energy + Delta-G solvation = -2963.751844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.93560 -40.63085 -38.52592 -35.77168 -34.25258 -31.81096 -31.61138 -29.63654 -27.49209 -27.07778 -25.59944 -23.66956 -23.53477 -21.96341 -20.65336 -19.82988 -18.84595 -17.26008 -16.94268 -16.52574 -16.31249 -16.17095 -15.77441 -15.50984 -15.15950 -15.05663 -14.58449 -14.36865 -14.03847 -13.62632 -13.62139 -13.44190 -13.09905 -12.93173 -12.47813 -12.37011 -12.31807 -12.14485 -12.05522 -11.74393 -11.49322 -11.16572 -10.79146 -9.85443 -9.76170 -9.38683 -8.88928 -8.46929 -6.15122 0.62251 0.69069 1.35138 1.44537 1.52696 2.18048 2.77378 2.97730 3.14340 3.45028 3.51549 3.55419 4.04746 4.08188 4.14327 4.20497 4.25247 4.36899 4.48271 4.54452 4.61913 4.63691 4.70854 4.78011 4.82999 4.87278 4.97493 5.08477 5.11160 5.16226 5.33059 5.34624 5.59300 5.72882 5.82879 6.03625 6.04952 6.12226 6.26638 6.44299 6.97894 7.79576 8.76582 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043680 B = 0.003189 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.872073 B = 8778.303793 C = 8993.040457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.500 5.500 3 C 0.001 3.999 4 C 0.058 3.942 5 N -0.681 5.681 6 C 0.123 3.877 7 C -0.158 4.158 8 C -0.061 4.061 9 C -0.244 4.244 10 C 0.114 3.886 11 O -0.234 6.234 12 C -0.413 4.413 13 H 0.102 0.898 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.252 1.252 20 C -0.208 4.208 21 C -0.048 4.048 22 C 0.012 3.988 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.346 0.654 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.272 0.728 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -10.989 18.009 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.222 5.222 3 C -0.128 4.128 4 C -0.052 4.052 5 N -0.314 5.314 6 C -0.006 4.006 7 C -0.159 4.159 8 C -0.080 4.080 9 C -0.263 4.263 10 C 0.063 3.937 11 O -0.141 6.141 12 C -0.489 4.489 13 H 0.119 0.881 14 C -0.221 4.221 15 N -0.561 5.561 16 Si 0.838 3.162 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.176 1.176 20 C -0.227 4.227 21 C -0.066 4.066 22 C -0.118 4.118 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.165 0.835 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.718 -11.751 17.671 21.978 hybrid contribution 0.515 1.755 -0.500 1.896 sum -5.203 -9.996 17.172 20.539 Atomic orbital electron populations 1.22858 0.88767 1.02775 1.01405 1.68460 1.10099 1.18615 1.25060 1.24219 0.97046 0.91756 0.99820 1.23441 0.97587 0.94074 0.90147 1.60682 1.31851 1.08273 1.30563 1.20663 0.89524 0.97433 0.92934 1.19628 1.04869 0.96414 0.94995 1.20959 0.96394 0.92567 0.98053 1.21235 1.09716 1.02389 0.92937 1.19956 0.94601 0.90428 0.88687 1.83943 1.66663 1.29111 1.34374 1.21828 1.33908 0.96555 0.96648 0.88070 1.26607 0.98454 1.03005 0.94072 1.70186 1.46110 1.38496 1.01271 0.84580 0.77746 0.74783 0.79061 1.18824 1.19631 1.17558 1.20469 1.08306 0.93262 1.00658 1.20846 0.96205 0.98217 0.91331 1.24176 0.97211 0.99820 0.90547 0.94633 0.90757 0.90787 0.88590 0.90529 0.89650 0.83478 0.89874 0.93407 0.84259 0.86441 0.91851 0.87188 0.83929 0.90947 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.65 127.69 1.23 1.10 16 2 N -0.50 -8.65 6.55 -933.95 -6.12 -14.77 16 3 C 0.00 0.01 7.58 86.41 0.66 0.67 16 4 C 0.06 0.97 4.30 46.48 0.20 1.17 16 5 N -0.68 -13.62 6.55 -499.52 -3.27 -16.90 16 6 C 0.12 2.64 5.66 85.56 0.48 3.12 16 7 C -0.16 -4.72 5.40 -19.84 -0.11 -4.82 16 8 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 9 C -0.24 -10.48 9.17 22.39 0.21 -10.28 16 10 C 0.11 5.69 6.65 22.58 0.15 5.84 16 11 O -0.23 -14.25 9.76 -22.72 -0.22 -14.47 16 12 C -0.41 -24.20 9.49 67.92 0.64 -23.56 16 13 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 14 C -0.02 -1.38 5.49 84.84 0.47 -0.91 16 15 N -0.92 -57.07 13.67 21.62 0.30 -56.78 16 16 Si 1.02 42.89 29.55 68.60 2.03 44.92 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 20 C -0.21 -8.93 9.99 22.39 0.22 -8.71 16 21 C -0.05 -1.59 9.69 22.25 0.22 -1.38 16 22 C 0.01 0.21 7.79 86.36 0.67 0.88 16 23 H 0.03 0.54 7.63 -2.39 -0.02 0.52 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.21 7.93 -2.39 -0.02 1.19 16 28 H 0.09 1.38 7.88 -2.39 -0.02 1.36 16 29 H 0.35 6.87 8.56 -89.69 -0.77 6.10 16 30 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 31 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 32 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 33 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 35 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 37 H 0.07 1.37 7.63 -2.39 -0.02 1.35 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -69.07 319.64 -1.74 -70.81 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.29 Total: 25.87 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 5.26 Total: -38.68 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -9.10 Total: -88.45 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.47 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.07 -1.74 -70.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383067524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.883 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds