Wall clock time and date at job start Mon Mar 30 2020 05:01:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47957 * 110.99955 * 2 1
4 4 C 1.53936 * 86.18002 * 222.41582 * 3 2 1
5 5 N 1.46907 * 113.73146 * 138.07985 * 4 3 2
6 6 C 1.46901 * 110.99930 * 156.90020 * 5 4 3
7 7 C 1.50695 * 109.46891 * 179.97438 * 6 5 4
8 8 C 1.38299 * 119.93247 * 90.00141 * 7 6 5
9 9 C 1.38101 * 120.07425 * 179.97438 * 8 7 6
10 10 C 1.38886 * 119.92536 * 0.02562 * 9 8 7
11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8
12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9
13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10
14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10
15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11
16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11
17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12
18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12
19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12
20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8
21 21 C 1.38106 * 119.92542 * 359.44577 * 20 10 9
22 22 C 1.48186 * 111.06956 * 260.56984 * 2 1 3
23 23 H 1.08999 * 109.47277 * 59.99857 * 1 2 3
24 24 H 1.08995 * 109.46984 * 179.97438 * 1 2 3
25 25 H 1.08997 * 109.46908 * 299.99898 * 1 2 3
26 26 H 1.09002 * 113.75968 * 108.09747 * 3 2 1
27 27 H 1.08995 * 113.86001 * 336.74826 * 3 2 1
28 28 H 1.08998 * 113.73610 * 269.25713 * 4 3 2
29 29 H 1.00900 * 111.00053 * 32.94482 * 5 4 3
30 30 H 1.08998 * 109.46720 * 60.00340 * 6 5 4
31 31 H 1.08996 * 109.47268 * 299.99941 * 6 5 4
32 32 H 1.07999 * 119.96503 * 0.02562 * 8 7 6
33 33 H 1.07992 * 120.03608 * 180.02562 * 9 8 7
34 34 H 0.96996 * 120.00178 * 179.97438 * 15 14 12
35 35 H 1.07996 * 120.03745 * 179.72497 * 20 10 9
36 36 H 1.07997 * 119.96326 * 180.27708 * 21 20 10
37 37 H 1.09004 * 113.76437 * 23.23408 * 22 2 1
38 38 H 1.09008 * 113.82194 * 251.80948 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9993 1.3813 0.0000
4 6 3.0211 0.8792 -1.0360
5 7 3.2516 1.8180 -2.1422
6 6 4.5591 1.5823 -2.7690
7 6 4.7592 2.5614 -3.8969
8 6 5.3559 3.7846 -3.6513
9 6 5.5412 4.6838 -4.6829
10 6 5.1270 4.3588 -5.9681
11 8 5.3082 5.2404 -6.9844
12 6 5.9983 6.3643 -6.7040
13 1 6.3078 6.5692 -5.6899
14 6 6.3105 7.2572 -7.7179
15 7 5.9338 7.0075 -8.9534
16 14 7.2672 8.8139 -7.3297
17 1 8.7222 8.5454 -7.4565
18 1 6.8767 9.8851 -8.2811
19 1 6.9632 9.2489 -5.9427
20 6 4.5224 3.1323 -6.2104
21 6 4.3451 2.2351 -5.1756
22 6 2.0018 -0.2266 -1.3641
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 2.4460 1.6802 0.9483
27 1 1.3022 2.1211 -0.3935
28 1 3.9459 0.5068 -0.5953
29 1 3.1677 2.7735 -1.8290
30 1 4.5965 0.5656 -3.1600
31 1 5.3468 1.7157 -2.0276
32 1 5.6781 4.0366 -2.6518
33 1 6.0076 5.6386 -4.4905
34 1 6.1519 7.6323 -9.6626
35 1 4.1953 2.8786 -7.2079
36 1 3.8791 1.2793 -5.3642
37 1 1.3043 0.0405 -2.1580
38 1 2.4505 -1.2101 -1.5038
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000383067524.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:17
Heat of formation + Delta-G solvation = 14.072212 kcal
Electronic energy + Delta-G solvation = -18640.558365 eV
Core-core repulsion = 15676.806521 eV
Total energy + Delta-G solvation = -2963.751844 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-40.93560 -40.63085 -38.52592 -35.77168 -34.25258 -31.81096 -31.61138 -29.63654
-27.49209 -27.07778 -25.59944 -23.66956 -23.53477 -21.96341 -20.65336 -19.82988
-18.84595 -17.26008 -16.94268 -16.52574 -16.31249 -16.17095 -15.77441 -15.50984
-15.15950 -15.05663 -14.58449 -14.36865 -14.03847 -13.62632 -13.62139 -13.44190
-13.09905 -12.93173 -12.47813 -12.37011 -12.31807 -12.14485 -12.05522 -11.74393
-11.49322 -11.16572 -10.79146 -9.85443 -9.76170 -9.38683 -8.88928 -8.46929
-6.15122 0.62251 0.69069 1.35138 1.44537 1.52696 2.18048 2.77378
2.97730 3.14340 3.45028 3.51549 3.55419 4.04746 4.08188 4.14327
4.20497 4.25247 4.36899 4.48271 4.54452 4.61913 4.63691 4.70854
4.78011 4.82999 4.87278 4.97493 5.08477 5.11160 5.16226 5.33059
5.34624 5.59300 5.72882 5.82879 6.03625 6.04952 6.12226 6.26638
6.44299 6.97894 7.79576 8.76582
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.043680 B = 0.003189 C = 0.003113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 640.872073 B = 8778.303793 C = 8993.040457
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.009 4.009
2 N -0.500 5.500
3 C 0.001 3.999
4 C 0.058 3.942
5 N -0.681 5.681
6 C 0.123 3.877
7 C -0.158 4.158
8 C -0.061 4.061
9 C -0.244 4.244
10 C 0.114 3.886
11 O -0.234 6.234
12 C -0.413 4.413
13 H 0.102 0.898
14 C -0.024 4.024
15 N -0.922 5.922
16 Si 1.019 2.981
17 H -0.263 1.263
18 H -0.272 1.272
19 H -0.252 1.252
20 C -0.208 4.208
21 C -0.048 4.048
22 C 0.012 3.988
23 H 0.035 0.965
24 H 0.074 0.926
25 H 0.073 0.927
26 H 0.096 0.904
27 H 0.077 0.923
28 H 0.086 0.914
29 H 0.346 0.654
30 H 0.083 0.917
31 H 0.048 0.952
32 H 0.140 0.860
33 H 0.118 0.882
34 H 0.272 0.728
35 H 0.110 0.890
36 H 0.143 0.857
37 H 0.072 0.928
38 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.452 -10.989 18.009 21.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 N -0.222 5.222
3 C -0.128 4.128
4 C -0.052 4.052
5 N -0.314 5.314
6 C -0.006 4.006
7 C -0.159 4.159
8 C -0.080 4.080
9 C -0.263 4.263
10 C 0.063 3.937
11 O -0.141 6.141
12 C -0.489 4.489
13 H 0.119 0.881
14 C -0.221 4.221
15 N -0.561 5.561
16 Si 0.838 3.162
17 H -0.188 1.188
18 H -0.196 1.196
19 H -0.176 1.176
20 C -0.227 4.227
21 C -0.066 4.066
22 C -0.118 4.118
23 H 0.054 0.946
24 H 0.092 0.908
25 H 0.092 0.908
26 H 0.114 0.886
27 H 0.095 0.905
28 H 0.104 0.896
29 H 0.165 0.835
30 H 0.101 0.899
31 H 0.066 0.934
32 H 0.157 0.843
33 H 0.136 0.864
34 H 0.081 0.919
35 H 0.128 0.872
36 H 0.161 0.839
37 H 0.091 0.909
38 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -5.718 -11.751 17.671 21.978
hybrid contribution 0.515 1.755 -0.500 1.896
sum -5.203 -9.996 17.172 20.539
Atomic orbital electron populations
1.22858 0.88767 1.02775 1.01405 1.68460 1.10099 1.18615 1.25060
1.24219 0.97046 0.91756 0.99820 1.23441 0.97587 0.94074 0.90147
1.60682 1.31851 1.08273 1.30563 1.20663 0.89524 0.97433 0.92934
1.19628 1.04869 0.96414 0.94995 1.20959 0.96394 0.92567 0.98053
1.21235 1.09716 1.02389 0.92937 1.19956 0.94601 0.90428 0.88687
1.83943 1.66663 1.29111 1.34374 1.21828 1.33908 0.96555 0.96648
0.88070 1.26607 0.98454 1.03005 0.94072 1.70186 1.46110 1.38496
1.01271 0.84580 0.77746 0.74783 0.79061 1.18824 1.19631 1.17558
1.20469 1.08306 0.93262 1.00658 1.20846 0.96205 0.98217 0.91331
1.24176 0.97211 0.99820 0.90547 0.94633 0.90757 0.90787 0.88590
0.90529 0.89650 0.83478 0.89874 0.93407 0.84259 0.86441 0.91851
0.87188 0.83929 0.90947 0.89270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.13 9.65 127.69 1.23 1.10 16
2 N -0.50 -8.65 6.55 -933.95 -6.12 -14.77 16
3 C 0.00 0.01 7.58 86.41 0.66 0.67 16
4 C 0.06 0.97 4.30 46.48 0.20 1.17 16
5 N -0.68 -13.62 6.55 -499.52 -3.27 -16.90 16
6 C 0.12 2.64 5.66 85.56 0.48 3.12 16
7 C -0.16 -4.72 5.40 -19.84 -0.11 -4.82 16
8 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16
9 C -0.24 -10.48 9.17 22.39 0.21 -10.28 16
10 C 0.11 5.69 6.65 22.58 0.15 5.84 16
11 O -0.23 -14.25 9.76 -22.72 -0.22 -14.47 16
12 C -0.41 -24.20 9.49 67.92 0.64 -23.56 16
13 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16
14 C -0.02 -1.38 5.49 84.84 0.47 -0.91 16
15 N -0.92 -57.07 13.67 21.62 0.30 -56.78 16
16 Si 1.02 42.89 29.55 68.60 2.03 44.92 16
17 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16
18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16
19 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16
20 C -0.21 -8.93 9.99 22.39 0.22 -8.71 16
21 C -0.05 -1.59 9.69 22.25 0.22 -1.38 16
22 C 0.01 0.21 7.79 86.36 0.67 0.88 16
23 H 0.03 0.54 7.63 -2.39 -0.02 0.52 16
24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
27 H 0.08 1.21 7.93 -2.39 -0.02 1.19 16
28 H 0.09 1.38 7.88 -2.39 -0.02 1.36 16
29 H 0.35 6.87 8.56 -89.69 -0.77 6.10 16
30 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16
31 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16
32 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16
33 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16
34 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16
35 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16
36 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16
37 H 0.07 1.37 7.63 -2.39 -0.02 1.35 16
38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16
Total: -1.00 -69.07 319.64 -1.74 -70.81
By element:
Atomic # 1 Polarization: 25.58 SS G_CDS: 0.29 Total: 25.87 kcal
Atomic # 6 Polarization: -43.94 SS G_CDS: 5.26 Total: -38.68 kcal
Atomic # 7 Polarization: -79.35 SS G_CDS: -9.10 Total: -88.45 kcal
Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.47 kcal
Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal
Total: -69.07 -1.74 -70.81 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383067524.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.883 kcal
(2) G-P(sol) polarization free energy of solvation -69.068 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.743 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds