Wall clock time and date at job start Mon Mar 30 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.33230 * 2 1 4 4 C 1.55118 * 110.42633 * 237.79647 * 2 1 3 5 5 C 1.55133 * 101.55962 * 204.23885 * 4 2 1 6 6 H 1.09002 * 110.70544 * 276.96473 * 5 4 2 7 7 O 1.42899 * 110.70590 * 153.90840 * 5 4 2 8 8 C 1.54314 * 103.18024 * 35.43688 * 5 4 2 9 9 N 1.47442 * 107.23087 * 337.80253 * 8 5 4 10 10 C 1.39844 * 111.00319 * 236.74351 * 9 8 5 11 11 C 1.39605 * 119.84245 * 239.87658 * 10 9 8 12 12 C 1.38056 * 120.55255 * 179.97438 * 11 10 9 13 13 C 1.38731 * 120.22040 * 359.95349 * 12 11 10 14 14 N 1.38872 * 120.16488 * 179.97438 * 13 12 11 15 15 C 1.41564 * 119.67639 * 0.02562 * 13 12 11 16 16 C 1.41026 * 120.27064 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99875 * 28.60320 * 16 15 13 18 18 C 1.39888 * 120.00019 * 208.60509 * 16 15 13 19 19 N 1.30898 * 119.99948 * 12.42293 * 18 16 15 20 20 Si 1.86795 * 119.99781 * 192.42459 * 18 16 15 21 21 H 1.48497 * 109.47077 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46935 * 119.99968 * 20 18 16 23 23 H 1.48495 * 109.47419 * 239.99705 * 20 18 16 24 24 C 1.38002 * 119.84211 * 59.59603 * 10 9 8 25 25 H 1.08999 * 109.47351 * 297.73714 * 1 2 3 26 26 H 1.09000 * 109.47599 * 57.74122 * 1 2 3 27 27 H 1.09005 * 109.47179 * 177.74000 * 1 2 3 28 28 H 1.09005 * 111.14668 * 86.12660 * 4 2 1 29 29 H 1.09002 * 110.92078 * 322.25396 * 4 2 1 30 30 H 0.96698 * 114.00317 * 182.40493 * 7 5 4 31 31 H 1.08993 * 109.89009 * 97.20589 * 8 5 4 32 32 H 1.08999 * 109.88933 * 218.23912 * 8 5 4 33 33 H 1.08003 * 119.72317 * 359.97438 * 11 10 9 34 34 H 1.07996 * 119.88697 * 179.97438 * 12 11 10 35 35 H 0.96999 * 119.99265 * 354.87019 * 14 13 12 36 36 H 0.96994 * 120.00280 * 174.87340 * 14 13 12 37 37 H 0.96995 * 119.99858 * 174.98052 * 19 18 16 38 38 H 1.08006 * 120.11619 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0713 -0.7747 -1.2300 5 6 3.4786 -1.2002 -0.7347 6 1 4.1964 -0.3916 -0.8727 7 8 3.9156 -2.3818 -1.4090 8 6 3.2536 -1.4800 0.7661 9 7 2.0448 -0.7398 1.1720 10 6 2.3218 0.1300 2.2314 11 6 1.6449 -0.0142 3.4438 12 6 1.9072 0.8359 4.4995 13 6 2.8500 1.8448 4.3660 14 7 3.1125 2.6996 5.4284 15 6 3.5423 1.9994 3.1409 16 6 4.5028 3.0211 2.9912 17 1 5.0510 3.3770 3.8509 18 6 4.7454 3.5736 1.7291 19 7 3.9269 3.3262 0.7381 20 14 6.2375 4.6642 1.4582 21 1 6.9985 4.7862 2.7275 22 1 7.1076 4.0627 0.4158 23 1 5.7931 6.0102 1.0156 24 6 3.2672 1.1232 2.0753 25 1 -0.3634 0.4783 0.9096 26 1 -0.3634 0.5485 -0.8690 27 1 -0.3634 -1.0269 -0.0405 28 1 2.1442 -0.1256 -2.1027 29 1 1.4527 -1.6462 -1.4442 30 1 4.7742 -2.7108 -1.1096 31 1 3.1056 -2.5479 0.9261 32 1 4.1132 -1.1346 1.3406 33 1 0.9098 -0.7975 3.5568 34 1 1.3769 0.7148 5.4325 35 1 2.5850 2.6403 6.2403 36 1 3.8233 3.3559 5.3587 37 1 4.0534 3.7665 -0.1169 38 1 3.7919 1.2293 1.1373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385076115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:24 Heat of formation + Delta-G solvation = -24.376918 kcal Electronic energy + Delta-G solvation = -20332.719927 eV Core-core repulsion = 17367.300804 eV Total energy + Delta-G solvation = -2965.419123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.44143 -37.44588 -35.70843 -33.56894 -33.02480 -30.67622 -29.54476 -29.38387 -26.25957 -25.18857 -24.60585 -21.45233 -20.91663 -20.27919 -19.06522 -17.43593 -16.75571 -16.02525 -15.65522 -15.47287 -14.74969 -14.62328 -13.89084 -13.29480 -13.18382 -12.94850 -12.68561 -12.54506 -11.95020 -11.81412 -11.74927 -11.46616 -11.29555 -11.19697 -11.10547 -11.04961 -10.50914 -10.38075 -10.17670 -9.92140 -9.77238 -9.59637 -9.21310 -8.98976 -7.60055 -7.35069 -6.65943 -6.24523 -4.18387 2.80177 3.02951 3.07997 3.11306 3.20808 3.96265 4.36966 4.64826 4.71143 5.08457 5.19994 5.25365 5.48930 5.65268 5.74078 5.89261 6.05408 6.13384 6.20303 6.27064 6.28704 6.36807 6.48414 6.57503 6.68433 6.80065 6.99168 7.18010 7.18838 7.34559 7.62331 7.64159 7.71141 7.83380 7.92868 8.21617 8.34919 8.63372 8.77951 8.83767 9.06548 9.15166 10.31771 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.008371 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.521390 B = 3344.177367 C = 4421.381840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.070 3.930 3 H 0.078 0.922 4 C -0.114 4.114 5 C 0.080 3.920 6 H 0.064 0.936 7 O -0.566 6.566 8 C 0.022 3.978 9 N -0.477 5.477 10 C 0.037 3.963 11 C -0.152 4.152 12 C -0.187 4.187 13 C 0.127 3.873 14 N -0.884 5.884 15 C 0.063 3.937 16 C -0.466 4.466 17 H 0.070 0.930 18 C 0.074 3.926 19 N -0.811 5.811 20 Si 0.904 3.096 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.277 1.277 24 C -0.154 4.154 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.374 0.626 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.377 0.623 36 H 0.391 0.609 37 H 0.275 0.725 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 -4.159 -1.328 4.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.037 4.037 3 H 0.096 0.904 4 C -0.152 4.152 5 C 0.021 3.979 6 H 0.082 0.918 7 O -0.370 6.370 8 C -0.106 4.106 9 N -0.199 5.199 10 C -0.058 4.058 11 C -0.172 4.172 12 C -0.211 4.211 13 C 0.025 3.975 14 N -0.425 5.425 15 C 0.058 3.942 16 C -0.498 4.498 17 H 0.088 0.912 18 C -0.140 4.140 19 N -0.439 5.439 20 Si 0.729 3.271 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.203 1.203 24 C -0.177 4.177 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.221 0.779 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.203 0.797 36 H 0.220 0.780 37 H 0.085 0.915 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.592 -4.461 -1.807 5.070 hybrid contribution 1.862 1.422 0.185 2.350 sum 0.270 -3.039 -1.622 3.456 Atomic orbital electron populations 1.21604 0.94476 1.01251 1.01206 1.22698 0.95814 0.97493 0.87691 0.90371 1.22760 0.94383 1.00150 0.97876 1.23164 0.96387 0.86609 0.91763 0.91786 1.86471 1.41025 1.44564 1.64954 1.23507 0.93044 0.99517 0.94492 1.61010 1.27234 1.26043 1.05653 1.18478 1.00133 0.95540 0.91610 1.19974 1.03323 1.01436 0.92496 1.19935 1.03427 0.99264 0.98447 1.18097 0.96930 0.92556 0.89883 1.41947 1.42166 1.42175 1.16191 1.17106 0.94000 0.93597 0.89533 1.19126 1.19055 1.17910 0.93665 0.91188 1.25706 0.96415 0.96361 0.95525 1.69793 1.33608 1.37193 1.03310 0.86338 0.81981 0.79623 0.79133 1.18807 1.20090 1.20256 1.21428 1.00729 0.95033 1.00483 0.92309 0.93110 0.92801 0.90973 0.90381 0.77901 0.90828 0.92057 0.88848 0.89223 0.79733 0.78039 0.91466 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.59 37.16 0.36 -1.78 16 2 C 0.07 1.32 2.87 -66.07 -0.19 1.13 16 3 H 0.08 1.72 6.80 -51.93 -0.35 1.36 16 4 C -0.11 -1.88 6.24 -24.48 -0.15 -2.04 16 5 C 0.08 1.34 4.31 -24.91 -0.11 1.23 16 6 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 7 O -0.57 -8.46 13.39 -35.23 -0.47 -8.93 16 8 C 0.02 0.40 6.28 -2.84 -0.02 0.38 16 9 N -0.48 -9.59 4.81 -160.37 -0.77 -10.36 16 10 C 0.04 0.85 4.65 -83.78 -0.39 0.46 16 11 C -0.15 -3.39 9.96 -39.14 -0.39 -3.78 16 12 C -0.19 -4.12 9.87 -39.47 -0.39 -4.51 16 13 C 0.13 2.96 6.79 -83.22 -0.56 2.39 16 14 N -0.88 -17.23 8.97 32.75 0.29 -16.94 16 15 C 0.06 1.61 5.56 -106.65 -0.59 1.02 16 16 C -0.47 -11.85 8.47 -37.91 -0.32 -12.17 16 17 H 0.07 1.70 6.71 -52.49 -0.35 1.35 16 18 C 0.07 1.83 5.22 -17.33 -0.09 1.74 16 19 N -0.81 -20.54 10.93 55.55 0.61 -19.93 16 20 Si 0.90 18.65 29.58 -169.99 -5.03 13.62 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 C -0.15 -3.83 6.37 -38.75 -0.25 -4.07 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 30 H 0.37 3.99 9.12 45.56 0.42 4.40 16 31 H 0.07 1.26 8.06 -51.93 -0.42 0.85 16 32 H 0.06 1.19 7.01 -51.93 -0.36 0.83 16 33 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.38 6.17 8.84 -40.82 -0.36 5.80 16 36 H 0.39 7.49 7.08 -40.82 -0.29 7.20 16 37 H 0.27 6.45 8.30 -40.82 -0.34 6.11 16 38 H 0.12 3.08 5.92 -52.48 -0.31 2.77 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -27.92 307.88 -8.37 -36.29 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -4.54 Total: 21.61 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -3.10 Total: -19.99 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.13 Total: -47.24 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.47 Total: -8.93 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.92 -8.37 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385076115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.911 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds