Wall clock time and date at job start Mon Mar 30 2020 04:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.33230 * 2 1 4 4 C 1.55118 * 110.42633 * 237.79647 * 2 1 3 5 5 C 1.55133 * 101.55962 * 204.23885 * 4 2 1 6 6 H 1.09002 * 110.70544 * 276.96473 * 5 4 2 7 7 O 1.42899 * 110.70590 * 153.90840 * 5 4 2 8 8 C 1.54314 * 103.18024 * 35.43688 * 5 4 2 9 9 N 1.47442 * 107.23087 * 337.80253 * 8 5 4 10 10 C 1.39844 * 111.00319 * 236.74351 * 9 8 5 11 11 C 1.39605 * 119.84245 * 239.87658 * 10 9 8 12 12 C 1.38056 * 120.55255 * 179.97438 * 11 10 9 13 13 C 1.38731 * 120.22040 * 359.95349 * 12 11 10 14 14 N 1.38872 * 120.16488 * 179.97438 * 13 12 11 15 15 C 1.41564 * 119.67639 * 0.02562 * 13 12 11 16 16 C 1.41026 * 120.27064 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99875 * 28.60320 * 16 15 13 18 18 C 1.39888 * 120.00019 * 208.60509 * 16 15 13 19 19 N 1.30898 * 119.99948 * 12.42293 * 18 16 15 20 20 Si 1.86795 * 119.99781 * 192.42459 * 18 16 15 21 21 H 1.48497 * 109.47077 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46935 * 119.99968 * 20 18 16 23 23 H 1.48495 * 109.47419 * 239.99705 * 20 18 16 24 24 C 1.38002 * 119.84211 * 59.59603 * 10 9 8 25 25 H 1.08999 * 109.47351 * 297.73714 * 1 2 3 26 26 H 1.09000 * 109.47599 * 57.74122 * 1 2 3 27 27 H 1.09005 * 109.47179 * 177.74000 * 1 2 3 28 28 H 1.09005 * 111.14668 * 86.12660 * 4 2 1 29 29 H 1.09002 * 110.92078 * 322.25396 * 4 2 1 30 30 H 0.96698 * 114.00317 * 182.40493 * 7 5 4 31 31 H 1.08993 * 109.89009 * 97.20589 * 8 5 4 32 32 H 1.08999 * 109.88933 * 218.23912 * 8 5 4 33 33 H 1.08003 * 119.72317 * 359.97438 * 11 10 9 34 34 H 1.07996 * 119.88697 * 179.97438 * 12 11 10 35 35 H 0.96999 * 119.99265 * 354.87019 * 14 13 12 36 36 H 0.96994 * 120.00280 * 174.87340 * 14 13 12 37 37 H 0.96995 * 119.99858 * 174.98052 * 19 18 16 38 38 H 1.08006 * 120.11619 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0713 -0.7747 -1.2300 5 6 3.4786 -1.2002 -0.7347 6 1 4.1964 -0.3916 -0.8727 7 8 3.9156 -2.3818 -1.4090 8 6 3.2536 -1.4800 0.7661 9 7 2.0448 -0.7398 1.1720 10 6 2.3218 0.1300 2.2314 11 6 1.6449 -0.0142 3.4438 12 6 1.9072 0.8359 4.4995 13 6 2.8500 1.8448 4.3660 14 7 3.1125 2.6996 5.4284 15 6 3.5423 1.9994 3.1409 16 6 4.5028 3.0211 2.9912 17 1 5.0510 3.3770 3.8509 18 6 4.7454 3.5736 1.7291 19 7 3.9269 3.3262 0.7381 20 14 6.2375 4.6642 1.4582 21 1 6.9985 4.7862 2.7275 22 1 7.1076 4.0627 0.4158 23 1 5.7931 6.0102 1.0156 24 6 3.2672 1.1232 2.0753 25 1 -0.3634 0.4783 0.9096 26 1 -0.3634 0.5485 -0.8690 27 1 -0.3634 -1.0269 -0.0405 28 1 2.1442 -0.1256 -2.1027 29 1 1.4527 -1.6462 -1.4442 30 1 4.7742 -2.7108 -1.1096 31 1 3.1056 -2.5479 0.9261 32 1 4.1132 -1.1346 1.3406 33 1 0.9098 -0.7975 3.5568 34 1 1.3769 0.7148 5.4325 35 1 2.5850 2.6403 6.2403 36 1 3.8233 3.3559 5.3587 37 1 4.0534 3.7665 -0.1169 38 1 3.7919 1.2293 1.1373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385076115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:23 Heat of formation + Delta-G solvation = -44.175526 kcal Electronic energy + Delta-G solvation = -20333.578459 eV Core-core repulsion = 17367.300804 eV Total energy + Delta-G solvation = -2966.277655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99708 -39.08771 -37.07904 -35.39928 -34.63247 -32.17665 -31.36884 -30.83989 -27.94353 -26.89927 -26.15027 -23.21076 -22.45029 -21.80971 -20.67239 -19.16223 -18.12882 -17.75084 -17.31521 -17.09509 -16.43027 -16.10883 -15.36280 -14.84201 -14.70092 -14.51021 -14.30340 -14.24457 -13.66124 -13.43175 -13.15020 -13.04611 -12.83820 -12.78252 -12.67058 -12.57466 -12.17988 -11.82824 -11.80897 -11.48800 -11.39213 -11.10465 -11.02601 -10.66796 -9.23422 -9.19068 -8.48918 -7.98485 -6.07471 1.05330 1.22822 1.38258 1.49788 1.50459 2.23478 2.83278 3.02680 3.31323 3.61820 3.62426 3.79564 3.87789 4.09865 4.34163 4.48806 4.58757 4.61230 4.73067 4.82674 4.84051 4.90905 4.99152 5.10655 5.14800 5.24353 5.32792 5.40636 5.44418 5.55755 5.85046 5.96916 6.09470 6.11865 6.39003 6.52933 6.78735 6.90988 6.95094 7.02154 7.32016 7.53108 8.49892 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.008371 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.521390 B = 3344.177367 C = 4421.381840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.068 3.932 3 H 0.040 0.960 4 C -0.106 4.106 5 C 0.091 3.909 6 H 0.049 0.951 7 O -0.566 6.566 8 C 0.023 3.977 9 N -0.477 5.477 10 C 0.032 3.968 11 C -0.155 4.155 12 C -0.191 4.191 13 C 0.118 3.882 14 N -0.872 5.872 15 C 0.026 3.974 16 C -0.491 4.491 17 H 0.073 0.927 18 C 0.033 3.967 19 N -0.840 5.840 20 Si 0.972 3.028 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.165 4.165 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.394 0.606 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.394 0.606 36 H 0.393 0.607 37 H 0.277 0.723 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -4.785 -1.365 5.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.039 4.039 3 H 0.058 0.942 4 C -0.144 4.144 5 C 0.031 3.969 6 H 0.067 0.933 7 O -0.373 6.373 8 C -0.104 4.104 9 N -0.200 5.200 10 C -0.063 4.063 11 C -0.175 4.175 12 C -0.215 4.215 13 C 0.015 3.985 14 N -0.414 5.414 15 C 0.020 3.980 16 C -0.523 4.523 17 H 0.091 0.909 18 C -0.179 4.179 19 N -0.469 5.469 20 Si 0.795 3.205 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.198 1.198 24 C -0.187 4.187 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.244 0.756 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.223 0.777 36 H 0.222 0.778 37 H 0.088 0.912 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.829 -5.096 -1.809 5.708 hybrid contribution 1.896 1.535 0.235 2.451 sum 0.068 -3.561 -1.574 3.894 Atomic orbital electron populations 1.21559 0.92742 1.02310 1.01220 1.22687 0.97147 0.95689 0.88386 0.94216 1.22714 0.94166 1.00417 0.97067 1.22898 0.96323 0.86882 0.90797 0.93278 1.86432 1.42601 1.43581 1.64656 1.23519 0.91745 0.99823 0.95337 1.61149 1.27807 1.25363 1.05641 1.18629 0.99496 0.95405 0.92739 1.20280 1.03185 1.01710 0.92373 1.20248 1.03114 0.98591 0.99543 1.18262 0.96833 0.93318 0.90059 1.41841 1.42250 1.41358 1.15988 1.17492 0.95215 0.94346 0.90914 1.19356 1.19922 1.18653 0.94397 0.90937 1.26470 0.98705 0.97670 0.95044 1.69890 1.35073 1.38203 1.03716 0.85303 0.78446 0.77800 0.78987 1.18248 1.19959 1.19769 1.21341 1.01616 0.96062 0.99730 0.94150 0.91113 0.91268 0.89902 0.89068 0.75647 0.89350 0.94051 0.87234 0.86381 0.77749 0.77848 0.91225 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 9.59 71.98 0.69 -3.20 16 2 C 0.07 2.55 2.87 45.46 0.13 2.68 16 3 H 0.04 1.81 6.80 -2.39 -0.02 1.79 16 4 C -0.11 -3.37 6.24 32.05 0.20 -3.17 16 5 C 0.09 2.98 4.31 31.77 0.14 3.12 16 6 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 7 O -0.57 -15.79 13.39 -148.98 -1.99 -17.79 16 8 C 0.02 0.84 6.28 86.65 0.54 1.39 16 9 N -0.48 -19.10 4.81 -661.30 -3.18 -22.28 16 10 C 0.03 1.50 4.65 38.14 0.18 1.67 16 11 C -0.15 -6.83 9.96 22.56 0.22 -6.60 16 12 C -0.19 -8.21 9.87 22.34 0.22 -7.99 16 13 C 0.12 5.48 6.79 38.97 0.26 5.75 16 14 N -0.87 -33.25 8.97 -50.31 -0.45 -33.70 16 15 C 0.03 1.34 5.56 -21.18 -0.12 1.22 16 16 C -0.49 -25.55 8.47 23.35 0.20 -25.35 16 17 H 0.07 3.58 6.71 -2.91 -0.02 3.56 16 18 C 0.03 1.64 5.22 85.23 0.44 2.08 16 19 N -0.84 -43.93 10.93 21.82 0.24 -43.69 16 20 Si 0.97 38.72 29.58 68.60 2.03 40.75 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 24 C -0.16 -8.46 6.37 22.81 0.15 -8.31 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.01 8.13 -2.38 -0.02 1.99 16 28 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.09 2.69 8.05 -2.39 -0.02 2.67 16 30 H 0.39 7.61 9.12 -74.06 -0.68 6.93 16 31 H 0.09 2.91 8.06 -2.39 -0.02 2.89 16 32 H 0.04 1.64 7.01 -2.39 -0.02 1.63 16 33 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.39 12.20 8.84 -92.71 -0.82 11.38 16 36 H 0.39 14.85 7.08 -92.71 -0.66 14.19 16 37 H 0.28 13.44 8.30 -92.71 -0.77 12.67 16 38 H 0.10 5.38 5.92 -2.91 -0.02 5.36 16 Total: -1.00 -60.19 307.88 -1.16 -61.34 By element: Atomic # 1 Polarization: 53.14 SS G_CDS: -1.05 Total: 52.08 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 3.26 Total: -36.71 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -3.40 Total: -99.67 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.99 Total: -17.79 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -60.19 -1.16 -61.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385076115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.166 kcal (2) G-P(sol) polarization free energy of solvation -60.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds