Wall clock time and date at job start Mon Mar 30 2020 04:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.64309 * 2 1 4 4 C 1.54937 * 110.87338 * 236.74493 * 2 1 3 5 5 N 1.48534 * 103.22574 * 204.15504 * 4 2 1 6 6 C 1.39859 * 110.99966 * 159.71868 * 5 4 2 7 7 C 1.39603 * 119.83845 * 122.48090 * 6 5 4 8 8 C 1.38051 * 120.54948 * 180.02562 * 7 6 5 9 9 C 1.38735 * 120.22381 * 0.24379 * 8 7 6 10 10 N 1.38852 * 120.16767 * 179.72883 * 9 8 7 11 11 C 1.41572 * 119.66689 * 359.44427 * 9 8 7 12 12 C 1.41031 * 120.26257 * 180.26497 * 11 9 8 13 13 H 1.07995 * 120.00379 * 25.89019 * 12 11 9 14 14 C 1.39886 * 119.99456 * 205.88644 * 12 11 9 15 15 N 1.30905 * 120.00499 * 15.37056 * 14 12 11 16 16 Si 1.86804 * 119.99651 * 195.36664 * 14 12 11 17 17 H 1.48501 * 109.46858 * 90.00337 * 16 14 12 18 18 H 1.48506 * 109.47252 * 210.00056 * 16 14 12 19 19 H 1.48493 * 109.47318 * 330.00098 * 16 14 12 20 20 C 1.38006 * 119.84001 * 302.45533 * 6 5 4 21 21 C 1.47903 * 105.81900 * 39.20867 * 5 4 2 22 22 C 1.53995 * 107.05845 * 334.66761 * 21 5 4 23 23 H 1.08997 * 110.30988 * 242.21330 * 22 21 5 24 24 O 1.42901 * 110.30657 * 120.14160 * 22 21 5 25 25 H 1.08999 * 109.46634 * 296.84400 * 1 2 3 26 26 H 1.08993 * 109.47340 * 56.84357 * 1 2 3 27 27 H 1.08999 * 109.47098 * 176.84987 * 1 2 3 28 28 H 1.08996 * 110.66853 * 85.71888 * 4 2 1 29 29 H 1.09004 * 110.66693 * 322.58741 * 4 2 1 30 30 H 1.08007 * 119.72376 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.89252 * 179.97438 * 8 7 6 32 32 H 0.96998 * 120.00069 * 354.79807 * 10 9 8 33 33 H 0.97006 * 120.00168 * 174.79985 * 10 9 8 34 34 H 0.96996 * 119.99764 * 184.97053 * 15 14 12 35 35 H 1.08000 * 120.11400 * 0.02879 * 20 6 5 36 36 H 1.09003 * 109.91903 * 94.02051 * 21 5 4 37 37 H 1.09000 * 109.91621 * 215.31629 * 21 5 4 38 38 H 0.96699 * 113.99862 * 61.45978 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0821 -0.7939 -1.2106 5 7 3.4359 -1.2050 -0.7586 6 6 3.9056 -2.2902 -1.5054 7 6 5.1101 -2.1839 -2.2032 8 6 5.5872 -3.2457 -2.9453 9 6 4.8695 -4.4313 -3.0095 10 7 5.3476 -5.4966 -3.7609 11 6 3.6503 -4.5516 -2.3001 12 6 2.9134 -5.7530 -2.3520 13 1 3.4169 -6.6871 -2.5522 14 6 1.5302 -5.7345 -2.1441 15 7 0.8747 -4.6028 -2.2012 16 14 0.6184 -7.3248 -1.7850 17 1 0.5854 -7.5561 -0.3185 18 1 -0.7703 -7.2269 -2.3020 19 1 1.3151 -8.4556 -2.4490 20 6 3.1765 -3.4611 -1.5485 21 6 3.2921 -1.5663 0.6684 22 6 2.0771 -0.7908 1.2105 23 1 2.3865 -0.1080 2.0018 24 8 1.0870 -1.6983 1.6985 25 1 -0.3632 0.4641 0.9169 26 1 -0.3633 0.5620 -0.8603 27 1 -0.3633 -1.0261 -0.0565 28 1 2.1481 -0.1554 -2.0916 29 1 1.4623 -1.6674 -1.4128 30 1 5.6730 -1.2630 -2.1627 31 1 6.5200 -3.1517 -3.4814 32 1 6.1450 -5.3888 -4.3026 33 1 4.8842 -6.3486 -3.7441 34 1 -0.0709 -4.5787 -1.9864 35 1 2.2451 -3.5397 -1.0075 36 1 3.1213 -2.6385 0.7647 37 1 4.1899 -1.2800 1.2163 38 1 1.3887 -2.2527 2.4311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387860186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:41 Heat of formation + Delta-G solvation = -22.176096 kcal Electronic energy + Delta-G solvation = -20337.558871 eV Core-core repulsion = 17372.235183 eV Total energy + Delta-G solvation = -2965.323688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42141 -37.53349 -35.40611 -33.55623 -33.19912 -31.36088 -29.47489 -28.33653 -26.47599 -25.30616 -24.45643 -21.83556 -20.94787 -19.60036 -19.31479 -17.20663 -17.07044 -16.02713 -15.54705 -15.30793 -14.70133 -14.36738 -14.09828 -13.51898 -13.29020 -12.87001 -12.60161 -12.24209 -12.18646 -11.84573 -11.64474 -11.55008 -11.39572 -11.14627 -11.06964 -10.69522 -10.49971 -10.45473 -10.15312 -9.88126 -9.69291 -9.62177 -9.10700 -8.93694 -7.64108 -7.34369 -6.67184 -6.19717 -4.12329 2.84566 3.06402 3.12410 3.13776 3.25727 4.01367 4.44706 4.68025 4.84082 5.06163 5.16596 5.24863 5.31341 5.66581 5.72882 5.87838 5.93831 6.14129 6.16918 6.26700 6.37524 6.39710 6.57085 6.60200 6.62395 6.81033 7.04999 7.17800 7.21245 7.36489 7.51982 7.65771 7.75462 7.92096 7.94866 8.25844 8.37639 8.65591 8.81238 8.87311 9.10249 9.18495 10.34299 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.008671 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.631943 B = 3228.420684 C = 4546.644529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 H 0.082 0.918 4 C 0.044 3.956 5 N -0.471 5.471 6 C 0.032 3.968 7 C -0.156 4.156 8 C -0.185 4.185 9 C 0.123 3.877 10 N -0.884 5.884 11 C 0.064 3.936 12 C -0.466 4.466 13 H 0.069 0.931 14 C 0.077 3.923 15 N -0.802 5.802 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.157 4.157 21 C 0.009 3.991 22 C 0.096 3.904 23 H 0.057 0.943 24 O -0.558 6.558 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.377 0.623 33 H 0.391 0.609 34 H 0.276 0.724 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 4.426 4.679 6.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.108 4.108 3 H 0.101 0.899 4 C -0.083 4.083 5 N -0.192 5.192 6 C -0.063 4.063 7 C -0.177 4.177 8 C -0.209 4.209 9 C 0.022 3.978 10 N -0.425 5.425 11 C 0.059 3.941 12 C -0.497 4.497 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.429 5.429 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.179 4.179 21 C -0.119 4.119 22 C 0.037 3.963 23 H 0.075 0.925 24 O -0.362 6.362 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.202 0.798 33 H 0.219 0.781 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.456 5.267 4.131 6.710 hybrid contribution -0.470 -1.914 0.438 2.019 sum -0.014 3.353 4.569 5.667 Atomic orbital electron populations 1.21464 0.94130 1.02692 1.00342 1.22133 0.96345 0.98393 0.93938 0.89943 1.23396 0.89453 0.99210 0.96261 1.62390 1.22565 1.33601 1.00694 1.18500 0.96433 0.90328 1.01004 1.19930 0.96861 0.97567 1.03354 1.19921 1.00152 0.94197 1.06628 1.18071 0.95961 0.88210 0.95608 1.41936 1.32908 1.13409 1.54280 1.17119 0.90252 0.94360 0.92383 1.19095 0.91714 0.93999 1.44901 0.91273 1.25687 0.97772 0.97265 0.93146 1.69810 1.10067 1.27054 1.35967 0.86444 0.78808 0.82787 0.79402 1.19646 1.20561 1.19018 1.21467 1.01200 0.93295 1.01955 1.23681 0.97460 0.99639 0.91133 1.22652 0.87755 0.90434 0.95459 0.92541 1.86570 1.40217 1.54608 1.54851 0.93203 0.93303 0.91515 0.91003 0.91106 0.88907 0.89253 0.79766 0.78062 0.91259 0.85757 0.92058 0.91043 0.78108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.58 37.16 0.32 -1.61 16 2 C -0.09 -1.42 3.63 -88.76 -0.32 -1.74 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.04 0.85 5.86 -1.90 -0.01 0.84 16 5 N -0.47 -9.66 5.28 -167.16 -0.88 -10.55 16 6 C 0.03 0.75 4.86 -83.77 -0.41 0.35 16 7 C -0.16 -3.59 9.96 -39.14 -0.39 -3.98 16 8 C -0.18 -4.17 9.87 -39.47 -0.39 -4.56 16 9 C 0.12 2.93 6.79 -83.23 -0.56 2.36 16 10 N -0.88 -17.62 8.97 32.75 0.29 -17.32 16 11 C 0.06 1.68 5.58 -106.65 -0.60 1.09 16 12 C -0.47 -12.11 8.53 -37.91 -0.32 -12.43 16 13 H 0.07 1.71 6.63 -52.49 -0.35 1.36 16 14 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 15 N -0.80 -20.90 10.87 55.55 0.60 -20.29 16 16 Si 0.90 19.04 29.59 -169.99 -5.03 14.01 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 C -0.16 -4.02 6.50 -38.75 -0.25 -4.27 16 21 C 0.01 0.15 6.31 -2.75 -0.02 0.14 16 22 C 0.10 1.49 4.23 -25.37 -0.11 1.39 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 O -0.56 -8.72 11.69 -35.23 -0.41 -9.13 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.15 7.50 -51.93 -0.39 0.76 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.07 1.61 6.52 -51.93 -0.34 1.27 16 30 H 0.09 1.98 8.06 -52.48 -0.42 1.55 16 31 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.38 6.30 8.84 -40.82 -0.36 5.94 16 33 H 0.39 7.65 7.04 -40.82 -0.29 7.36 16 34 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 35 H 0.12 3.36 5.09 -52.49 -0.27 3.10 16 36 H 0.06 1.23 6.49 -51.93 -0.34 0.90 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.37 4.37 9.11 45.56 0.41 4.78 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -28.73 304.07 -8.42 -37.15 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -4.43 Total: 22.15 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -3.15 Total: -20.59 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.02 Total: -48.16 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.41 Total: -9.13 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.73 -8.42 -37.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387860186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.974 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds