Wall clock time and date at job start Mon Mar 30 2020 04:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.64309 * 2 1 4 4 C 1.54937 * 110.87338 * 236.74493 * 2 1 3 5 5 N 1.48534 * 103.22574 * 204.15504 * 4 2 1 6 6 C 1.39859 * 110.99966 * 159.71868 * 5 4 2 7 7 C 1.39603 * 119.83845 * 122.48090 * 6 5 4 8 8 C 1.38051 * 120.54948 * 180.02562 * 7 6 5 9 9 C 1.38735 * 120.22381 * 0.24379 * 8 7 6 10 10 N 1.38852 * 120.16767 * 179.72883 * 9 8 7 11 11 C 1.41572 * 119.66689 * 359.44427 * 9 8 7 12 12 C 1.41031 * 120.26257 * 180.26497 * 11 9 8 13 13 H 1.07995 * 120.00379 * 25.89019 * 12 11 9 14 14 C 1.39886 * 119.99456 * 205.88644 * 12 11 9 15 15 N 1.30905 * 120.00499 * 15.37056 * 14 12 11 16 16 Si 1.86804 * 119.99651 * 195.36664 * 14 12 11 17 17 H 1.48501 * 109.46858 * 90.00337 * 16 14 12 18 18 H 1.48506 * 109.47252 * 210.00056 * 16 14 12 19 19 H 1.48493 * 109.47318 * 330.00098 * 16 14 12 20 20 C 1.38006 * 119.84001 * 302.45533 * 6 5 4 21 21 C 1.47903 * 105.81900 * 39.20867 * 5 4 2 22 22 C 1.53995 * 107.05845 * 334.66761 * 21 5 4 23 23 H 1.08997 * 110.30988 * 242.21330 * 22 21 5 24 24 O 1.42901 * 110.30657 * 120.14160 * 22 21 5 25 25 H 1.08999 * 109.46634 * 296.84400 * 1 2 3 26 26 H 1.08993 * 109.47340 * 56.84357 * 1 2 3 27 27 H 1.08999 * 109.47098 * 176.84987 * 1 2 3 28 28 H 1.08996 * 110.66853 * 85.71888 * 4 2 1 29 29 H 1.09004 * 110.66693 * 322.58741 * 4 2 1 30 30 H 1.08007 * 119.72376 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.89252 * 179.97438 * 8 7 6 32 32 H 0.96998 * 120.00069 * 354.79807 * 10 9 8 33 33 H 0.97006 * 120.00168 * 174.79985 * 10 9 8 34 34 H 0.96996 * 119.99764 * 184.97053 * 15 14 12 35 35 H 1.08000 * 120.11400 * 0.02879 * 20 6 5 36 36 H 1.09003 * 109.91903 * 94.02051 * 21 5 4 37 37 H 1.09000 * 109.91621 * 215.31629 * 21 5 4 38 38 H 0.96699 * 113.99862 * 61.45978 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0821 -0.7939 -1.2106 5 7 3.4359 -1.2050 -0.7586 6 6 3.9056 -2.2902 -1.5054 7 6 5.1101 -2.1839 -2.2032 8 6 5.5872 -3.2457 -2.9453 9 6 4.8695 -4.4313 -3.0095 10 7 5.3476 -5.4966 -3.7609 11 6 3.6503 -4.5516 -2.3001 12 6 2.9134 -5.7530 -2.3520 13 1 3.4169 -6.6871 -2.5522 14 6 1.5302 -5.7345 -2.1441 15 7 0.8747 -4.6028 -2.2012 16 14 0.6184 -7.3248 -1.7850 17 1 0.5854 -7.5561 -0.3185 18 1 -0.7703 -7.2269 -2.3020 19 1 1.3151 -8.4556 -2.4490 20 6 3.1765 -3.4611 -1.5485 21 6 3.2921 -1.5663 0.6684 22 6 2.0771 -0.7908 1.2105 23 1 2.3865 -0.1080 2.0018 24 8 1.0870 -1.6983 1.6985 25 1 -0.3632 0.4641 0.9169 26 1 -0.3633 0.5620 -0.8603 27 1 -0.3633 -1.0261 -0.0565 28 1 2.1481 -0.1554 -2.0916 29 1 1.4623 -1.6674 -1.4128 30 1 5.6730 -1.2630 -2.1627 31 1 6.5200 -3.1517 -3.4814 32 1 6.1450 -5.3888 -4.3026 33 1 4.8842 -6.3486 -3.7441 34 1 -0.0709 -4.5787 -1.9864 35 1 2.2451 -3.5397 -1.0075 36 1 3.1213 -2.6385 0.7647 37 1 4.1899 -1.2800 1.2163 38 1 1.3887 -2.2527 2.4311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387860186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:41 Heat of formation + Delta-G solvation = -43.124445 kcal Electronic energy + Delta-G solvation = -20338.467260 eV Core-core repulsion = 17372.235183 eV Total energy + Delta-G solvation = -2966.232077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95094 -39.19672 -36.84962 -35.43121 -34.72112 -32.86493 -31.36780 -29.80182 -28.10442 -27.11484 -25.98129 -23.48635 -22.67954 -21.06226 -20.91477 -19.00062 -18.39646 -17.77279 -17.29354 -16.88807 -16.44694 -15.86587 -15.47459 -14.93108 -14.86704 -14.61750 -14.36869 -13.79465 -13.69865 -13.39013 -13.24009 -13.10436 -13.02022 -12.83028 -12.79996 -12.22334 -12.13468 -11.85810 -11.68825 -11.46419 -11.34520 -11.01769 -10.98463 -10.61068 -9.31896 -9.24660 -8.54774 -7.98325 -6.06425 1.04194 1.21395 1.37256 1.48212 1.51310 2.23633 2.81339 3.13589 3.46385 3.60632 3.68373 3.73056 3.93558 4.08975 4.36883 4.56908 4.59615 4.64559 4.77729 4.81747 4.84193 4.91157 5.01192 5.16547 5.17233 5.23160 5.29723 5.40271 5.50264 5.52790 5.84014 5.96731 5.97467 6.05937 6.38171 6.50995 6.86651 6.89687 6.93538 7.01499 7.30771 7.52433 8.46840 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.008671 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.631943 B = 3228.420684 C = 4546.644529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 H 0.109 0.891 4 C 0.043 3.957 5 N -0.470 5.470 6 C 0.024 3.976 7 C -0.159 4.159 8 C -0.189 4.189 9 C 0.115 3.885 10 N -0.872 5.872 11 C 0.026 3.974 12 C -0.492 4.492 13 H 0.074 0.926 14 C 0.033 3.967 15 N -0.834 5.834 16 Si 0.969 3.031 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.257 1.257 20 C -0.169 4.169 21 C 0.007 3.993 22 C 0.103 3.897 23 H 0.095 0.905 24 O -0.574 6.574 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.395 0.605 33 H 0.393 0.607 34 H 0.277 0.723 35 H 0.101 0.899 36 H 0.031 0.969 37 H 0.090 0.910 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 5.204 5.316 7.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 H 0.128 0.872 4 C -0.084 4.084 5 N -0.191 5.191 6 C -0.072 4.072 7 C -0.179 4.179 8 C -0.213 4.213 9 C 0.012 3.988 10 N -0.414 5.414 11 C 0.020 3.980 12 C -0.523 4.523 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.462 5.462 16 Si 0.792 3.208 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.180 1.180 20 C -0.192 4.192 21 C -0.120 4.120 22 C 0.044 3.956 23 H 0.112 0.888 24 O -0.382 6.382 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.223 0.777 33 H 0.221 0.779 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.155 6.029 4.758 7.767 hybrid contribution -0.588 -2.101 0.216 2.192 sum 0.567 3.928 4.974 6.364 Atomic orbital electron populations 1.21394 0.93515 1.01116 1.01903 1.22192 0.96813 0.99086 0.92164 0.87246 1.23335 0.88712 0.98090 0.98243 1.62470 1.22807 1.32129 1.01697 1.18713 0.96603 0.90489 1.01350 1.20269 0.96611 0.98444 1.02611 1.20257 1.01072 0.93512 1.06482 1.18239 0.95422 0.89558 0.95552 1.41825 1.33345 1.12556 1.53713 1.17517 0.91832 0.94950 0.93680 1.19345 0.92474 0.94263 1.46261 0.90836 1.26489 0.98355 1.00364 0.92661 1.69915 1.10245 1.29056 1.36955 0.85388 0.77440 0.78890 0.79102 1.19444 1.20274 1.18030 1.21363 1.00824 0.94461 1.02503 1.23774 0.99806 0.98411 0.90049 1.22693 0.86344 0.90365 0.96210 0.88770 1.86542 1.40612 1.55208 1.55798 0.91177 0.92180 0.94593 0.91072 0.95302 0.86985 0.86210 0.77713 0.77870 0.91242 0.88129 0.95033 0.89160 0.76297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.52 8.58 71.98 0.62 -2.90 16 2 C -0.08 -2.54 3.63 -9.59 -0.03 -2.57 16 3 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 4 C 0.04 1.71 5.86 86.65 0.51 2.21 16 5 N -0.47 -19.21 5.28 -682.78 -3.60 -22.81 16 6 C 0.02 1.13 4.86 38.13 0.19 1.31 16 7 C -0.16 -7.15 9.96 22.55 0.22 -6.92 16 8 C -0.19 -8.29 9.87 22.34 0.22 -8.07 16 9 C 0.12 5.47 6.79 38.97 0.26 5.73 16 10 N -0.87 -33.96 8.97 -50.31 -0.45 -34.41 16 11 C 0.03 1.37 5.58 -21.18 -0.12 1.26 16 12 C -0.49 -26.28 8.53 23.35 0.20 -26.08 16 13 H 0.07 3.70 6.63 -2.91 -0.02 3.68 16 14 C 0.03 1.73 5.18 85.23 0.44 2.18 16 15 N -0.83 -45.45 10.87 21.82 0.24 -45.21 16 16 Si 0.97 39.86 29.59 68.60 2.03 41.89 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 18 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 C -0.17 -9.01 6.50 22.81 0.15 -8.86 16 21 C 0.01 0.25 6.31 86.45 0.55 0.80 16 22 C 0.10 3.00 4.23 31.47 0.13 3.14 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 24 O -0.57 -17.58 11.69 -148.98 -1.74 -19.32 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.03 1.25 7.50 -2.39 -0.02 1.23 16 28 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.03 1.39 6.52 -2.38 -0.02 1.37 16 30 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.39 12.45 8.84 -92.71 -0.82 11.64 16 33 H 0.39 15.17 7.04 -92.70 -0.65 14.51 16 34 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 35 H 0.10 5.80 5.09 -2.91 -0.01 5.78 16 36 H 0.03 1.31 6.49 -2.39 -0.02 1.29 16 37 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.39 8.84 9.11 -74.06 -0.67 8.16 16 Total: -1.00 -63.75 304.07 -1.24 -64.99 By element: Atomic # 1 Polarization: 54.70 SS G_CDS: -1.04 Total: 53.66 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 3.33 Total: -38.78 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.82 Total: -102.43 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.74 Total: -19.32 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -63.75 -1.24 -64.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387860186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.865 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds