Wall clock time and date at job start Mon Mar 30 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47199 * 324.99664 * 7 6 4 9 9 C 1.52996 * 109.47084 * 84.99619 * 7 6 4 10 10 C 1.50695 * 109.47162 * 204.99813 * 7 6 4 11 11 H 1.07999 * 120.00376 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00418 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99687 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00415 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.47329 * 60.00060 * 14 12 10 16 16 H 1.48503 * 109.47107 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46951 * 299.99678 * 14 12 10 18 18 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 19 19 C 1.38292 * 119.92152 * 299.73176 * 18 2 1 20 20 C 1.38105 * 120.06736 * 179.72577 * 19 18 2 21 21 C 1.38908 * 119.93173 * 0.54470 * 20 19 18 22 22 N 1.39668 * 120.08189 * 179.75156 * 21 20 19 23 23 C 1.38914 * 119.84294 * 359.72443 * 21 20 19 24 24 C 1.38104 * 119.92960 * 0.02562 * 23 21 20 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47646 * 60.00441 * 9 7 6 30 30 H 1.09000 * 109.47057 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.47281 * 299.99855 * 9 7 6 32 32 H 0.97003 * 120.00117 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.96360 * 359.97103 * 19 18 2 34 34 H 1.08004 * 120.03377 * 180.26677 * 20 19 18 35 35 H 0.96998 * 120.00666 * 179.97438 * 22 21 20 36 36 H 0.97001 * 119.99566 * 359.97438 * 22 21 20 37 37 H 1.08009 * 120.03514 * 179.97438 * 23 21 20 38 38 H 1.08001 * 119.96004 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 1 2.2325 -2.0130 3.4616 9 6 3.5978 -0.4342 3.9944 10 6 1.2656 -0.6655 4.8044 11 1 0.3976 -0.0390 4.6611 12 6 1.5234 -1.2130 6.0433 13 7 2.5807 -1.9755 6.2180 14 14 0.3713 -0.8719 7.4734 15 1 -0.9901 -1.3631 7.1405 16 1 0.8666 -1.5717 8.6859 17 1 0.3210 0.5898 7.7307 18 6 2.0324 -0.7104 -1.2304 19 6 1.7020 -2.0360 -1.4449 20 6 2.1561 -2.6884 -2.5743 21 6 2.9548 -2.0149 -3.4897 22 7 3.4201 -2.6731 -4.6303 23 6 3.2894 -0.6850 -3.2682 24 6 2.8277 -0.0371 -2.1394 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.1492 0.5389 2.5435 29 1 3.5608 0.6386 4.1837 30 1 3.9616 -0.9481 4.8841 31 1 4.2703 -0.6330 3.1599 32 1 2.7623 -2.3605 7.0897 33 1 1.0849 -2.5605 -0.7303 34 1 1.8941 -3.7224 -2.7434 35 1 3.9775 -2.2017 -5.2690 36 1 3.1857 -3.6018 -4.7838 37 1 3.9106 -0.1584 -3.9777 38 1 3.0872 0.9970 -1.9669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396416629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:24 Heat of formation + Delta-G solvation = -26.606509 kcal Electronic energy + Delta-G solvation = -19357.344360 eV Core-core repulsion = 16391.828555 eV Total energy + Delta-G solvation = -2965.515805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77495 -38.39447 -35.26441 -34.49325 -32.76331 -31.95209 -30.67191 -28.77059 -27.50783 -25.21902 -24.13675 -22.64627 -21.76993 -20.29840 -19.10620 -17.21812 -17.02864 -16.63837 -15.61314 -15.47919 -14.93619 -14.52350 -14.04645 -13.71368 -13.44667 -13.23432 -13.13157 -12.86510 -12.47555 -12.31196 -11.92625 -11.73898 -11.33720 -11.10023 -10.91947 -10.87739 -10.66815 -10.58643 -10.31652 -10.22990 -10.18810 -9.00318 -8.84313 -8.63145 -8.49516 -7.80202 -7.33567 -6.08202 -4.17426 1.68552 1.80268 3.27710 3.32886 3.34031 3.54001 3.87466 4.00223 4.29827 4.50151 4.95303 5.05570 5.18045 5.23674 5.37816 5.46348 5.63450 5.70530 5.76962 5.94939 6.00687 6.08674 6.28592 6.31420 6.49149 6.63834 6.88497 7.00360 7.03189 7.06135 7.21803 7.54419 7.55716 7.63740 7.74209 7.75629 7.97904 8.20575 8.76394 8.84791 9.25008 9.50723 10.97652 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039522 B = 0.004066 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.298921 B = 6884.092801 C = 7055.938520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 H 0.094 0.906 4 C 0.504 3.496 5 O -0.547 6.547 6 N -0.710 5.710 7 C 0.265 3.735 8 H 0.047 0.953 9 C -0.147 4.147 10 C -0.533 4.533 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.884 5.884 14 Si 0.901 3.099 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.113 4.113 19 C -0.032 4.032 20 C -0.199 4.199 21 C 0.207 3.793 22 N -0.884 5.884 23 C -0.203 4.203 24 C -0.067 4.067 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.387 0.613 29 H 0.025 0.975 30 H 0.089 0.911 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.394 0.606 36 H 0.395 0.605 37 H 0.115 0.885 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 3.506 -17.787 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 H 0.112 0.888 4 C 0.288 3.712 5 O -0.425 6.425 6 N -0.358 5.358 7 C 0.163 3.837 8 H 0.065 0.935 9 C -0.205 4.205 10 C -0.571 4.571 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.522 5.522 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.115 4.115 19 C -0.051 4.051 20 C -0.222 4.222 21 C 0.104 3.896 22 N -0.423 5.423 23 C -0.226 4.226 24 C -0.086 4.086 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.219 0.781 29 H 0.044 0.956 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.222 0.778 36 H 0.223 0.777 37 H 0.133 0.867 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.315 2.692 -17.628 17.881 hybrid contribution -0.585 0.371 0.620 0.929 sum -1.900 3.063 -17.008 17.385 Atomic orbital electron populations 1.21764 0.92813 1.02773 1.02173 1.20247 0.97136 0.99831 0.91876 0.88803 1.20348 0.81046 0.85063 0.84698 1.90660 1.38471 1.26648 1.86723 1.46507 1.51752 1.31172 1.06397 1.18693 0.91417 0.93336 0.80230 0.93487 1.22072 0.98063 0.99194 1.01205 1.21198 1.09731 1.31985 0.94228 0.92170 1.24891 0.95429 0.94746 0.98667 1.69901 1.26235 1.32086 1.23928 0.86520 0.80878 0.78402 0.81348 1.20195 1.21174 1.20184 1.19119 1.01728 0.94726 0.95909 1.20677 0.96455 0.93417 0.94544 1.20517 1.04833 1.00072 0.96749 1.17747 0.92899 0.91696 0.87236 1.42409 1.60147 1.15182 1.24601 1.20414 1.07608 0.93731 1.00850 1.20709 0.95531 0.99134 0.93191 0.91977 0.92086 0.91770 0.78066 0.95567 0.89265 0.96694 0.92579 0.86275 0.86642 0.77840 0.77742 0.86734 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.90 37.16 0.33 -1.43 16 2 C -0.07 -1.05 2.90 -92.92 -0.27 -1.32 16 3 H 0.09 1.23 7.87 -51.93 -0.41 0.82 16 4 C 0.50 10.25 6.98 -10.98 -0.08 10.17 16 5 O -0.55 -13.37 14.75 5.56 0.08 -13.29 16 6 N -0.71 -15.00 4.96 -54.94 -0.27 -15.27 16 7 C 0.27 6.87 2.56 -69.09 -0.18 6.69 16 8 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 9 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 10 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 13 N -0.88 -25.22 11.32 55.43 0.63 -24.60 16 14 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.11 -1.74 4.40 -104.59 -0.46 -2.20 16 19 C -0.03 -0.51 7.91 -39.61 -0.31 -0.82 16 20 C -0.20 -2.79 9.90 -39.38 -0.39 -3.18 16 21 C 0.21 2.63 6.75 -83.79 -0.57 2.06 16 22 N -0.88 -7.95 9.09 32.41 0.29 -7.66 16 23 C -0.20 -2.58 9.90 -39.38 -0.39 -2.97 16 24 C -0.07 -0.92 9.66 -39.62 -0.38 -1.30 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.82 7.40 -51.93 -0.38 0.44 16 27 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 28 H 0.39 7.06 7.96 -40.82 -0.32 6.74 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.12 1.96 7.51 -52.49 -0.39 1.57 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.39 2.74 8.84 -40.82 -0.36 2.38 16 36 H 0.39 2.90 8.84 -40.82 -0.36 2.54 16 37 H 0.11 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.12 1.36 7.94 -52.49 -0.42 0.94 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -32.10 318.29 -7.64 -39.74 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.41 Total: 11.09 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.75 Total: -10.57 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.65 Total: -47.52 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.10 -7.64 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396416629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.133 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds