Wall clock time and date at job start Mon Mar 30 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47199 * 324.99664 * 7 6 4 9 9 C 1.52996 * 109.47084 * 84.99619 * 7 6 4 10 10 C 1.50695 * 109.47162 * 204.99813 * 7 6 4 11 11 H 1.07999 * 120.00376 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00418 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99687 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00415 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.47329 * 60.00060 * 14 12 10 16 16 H 1.48503 * 109.47107 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46951 * 299.99678 * 14 12 10 18 18 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 19 19 C 1.38292 * 119.92152 * 299.73176 * 18 2 1 20 20 C 1.38105 * 120.06736 * 179.72577 * 19 18 2 21 21 C 1.38908 * 119.93173 * 0.54470 * 20 19 18 22 22 N 1.39668 * 120.08189 * 179.75156 * 21 20 19 23 23 C 1.38914 * 119.84294 * 359.72443 * 21 20 19 24 24 C 1.38104 * 119.92960 * 0.02562 * 23 21 20 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47646 * 60.00441 * 9 7 6 30 30 H 1.09000 * 109.47057 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.47281 * 299.99855 * 9 7 6 32 32 H 0.97003 * 120.00117 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.96360 * 359.97103 * 19 18 2 34 34 H 1.08004 * 120.03377 * 180.26677 * 20 19 18 35 35 H 0.96998 * 120.00666 * 179.97438 * 22 21 20 36 36 H 0.97001 * 119.99566 * 359.97438 * 22 21 20 37 37 H 1.08009 * 120.03514 * 179.97438 * 23 21 20 38 38 H 1.08001 * 119.96004 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 1 2.2325 -2.0130 3.4616 9 6 3.5978 -0.4342 3.9944 10 6 1.2656 -0.6655 4.8044 11 1 0.3976 -0.0390 4.6611 12 6 1.5234 -1.2130 6.0433 13 7 2.5807 -1.9755 6.2180 14 14 0.3713 -0.8719 7.4734 15 1 -0.9901 -1.3631 7.1405 16 1 0.8666 -1.5717 8.6859 17 1 0.3210 0.5898 7.7307 18 6 2.0324 -0.7104 -1.2304 19 6 1.7020 -2.0360 -1.4449 20 6 2.1561 -2.6884 -2.5743 21 6 2.9548 -2.0149 -3.4897 22 7 3.4201 -2.6731 -4.6303 23 6 3.2894 -0.6850 -3.2682 24 6 2.8277 -0.0371 -2.1394 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.1492 0.5389 2.5435 29 1 3.5608 0.6386 4.1837 30 1 3.9616 -0.9481 4.8841 31 1 4.2703 -0.6330 3.1599 32 1 2.7623 -2.3605 7.0897 33 1 1.0849 -2.5605 -0.7303 34 1 1.8941 -3.7224 -2.7434 35 1 3.9775 -2.2017 -5.2690 36 1 3.1857 -3.6018 -4.7838 37 1 3.9106 -0.1584 -3.9777 38 1 3.0872 0.9970 -1.9669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396416629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:24 Heat of formation + Delta-G solvation = -48.613694 kcal Electronic energy + Delta-G solvation = -19358.298663 eV Core-core repulsion = 16391.828555 eV Total energy + Delta-G solvation = -2966.470109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10576 -39.74416 -36.80392 -35.98801 -34.39996 -33.39460 -31.71210 -30.63504 -28.55662 -27.33023 -25.41757 -23.72773 -23.23927 -21.85104 -20.76113 -18.84210 -18.00976 -17.75924 -17.23565 -17.12411 -16.44976 -16.06142 -15.44540 -15.02081 -14.70430 -14.66007 -14.39307 -14.15139 -13.97244 -13.66229 -13.45979 -13.15740 -12.97124 -12.86076 -12.71907 -12.46163 -12.24517 -12.14648 -11.93962 -11.69753 -11.24634 -11.09503 -10.61634 -10.43175 -9.73534 -9.65602 -8.28395 -8.15270 -6.33449 0.63521 0.73264 1.45594 1.48032 1.55728 1.93637 2.38179 2.68782 3.08451 3.12579 3.15358 3.81822 3.95602 4.18226 4.21726 4.36193 4.45110 4.61440 4.75741 4.77251 4.93308 4.93651 5.00861 5.04961 5.12232 5.23890 5.30304 5.45809 5.48041 5.58775 5.64955 5.72645 5.91545 5.95429 6.06695 6.12650 6.66690 6.75114 7.06278 7.07417 7.34851 7.65926 8.90473 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039522 B = 0.004066 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.298921 B = 6884.092801 C = 7055.938520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 H 0.123 0.877 4 C 0.499 3.501 5 O -0.594 6.594 6 N -0.706 5.706 7 C 0.271 3.729 8 H -0.006 1.006 9 C -0.133 4.133 10 C -0.546 4.546 11 H 0.074 0.926 12 C 0.013 3.987 13 N -0.919 5.919 14 Si 0.973 3.027 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.263 1.263 18 C -0.137 4.137 19 C -0.054 4.054 20 C -0.217 4.217 21 C 0.209 3.791 22 N -0.869 5.869 23 C -0.208 4.208 24 C -0.070 4.070 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.404 0.596 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.009 0.991 32 H 0.265 0.735 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.407 0.593 36 H 0.404 0.596 37 H 0.143 0.857 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 5.515 -19.102 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.077 4.077 3 H 0.140 0.860 4 C 0.287 3.713 5 O -0.475 6.475 6 N -0.355 5.355 7 C 0.168 3.832 8 H 0.012 0.988 9 C -0.192 4.192 10 C -0.585 4.585 11 H 0.092 0.908 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.213 1.213 17 H -0.187 1.187 18 C -0.140 4.140 19 C -0.073 4.073 20 C -0.239 4.239 21 C 0.104 3.896 22 N -0.410 5.410 23 C -0.231 4.231 24 C -0.088 4.088 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.239 0.761 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.237 0.763 36 H 0.233 0.767 37 H 0.160 0.840 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.066 4.724 -18.997 19.685 hybrid contribution -0.293 -0.331 0.913 1.014 sum -2.359 4.393 -18.084 18.759 Atomic orbital electron populations 1.21766 0.90988 1.02354 1.03934 1.20224 0.98512 1.00229 0.88730 0.85954 1.21352 0.79812 0.84467 0.85711 1.90634 1.40543 1.28870 1.87445 1.46265 1.52095 1.31516 1.05608 1.18284 0.91959 0.90927 0.82071 0.98781 1.21890 0.97787 0.99656 0.99821 1.21538 1.10216 1.32160 0.94544 0.90755 1.25830 0.96934 0.94337 1.01598 1.70063 1.28073 1.33065 1.24557 0.85384 0.78595 0.78794 0.77475 1.19535 1.21282 1.18736 1.19228 1.03294 0.94811 0.96652 1.20665 0.97357 0.94171 0.95093 1.20671 1.05616 1.00769 0.96890 1.17870 0.92062 0.92010 0.87693 1.42379 1.59405 1.15656 1.23531 1.20777 1.07441 0.93770 1.01065 1.21014 0.94554 1.00274 0.92969 0.89198 0.93660 0.90919 0.76095 0.94026 0.91637 0.97214 0.92617 0.88528 0.85723 0.76315 0.76699 0.83955 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.90 71.98 0.64 -2.56 16 2 C -0.06 -1.63 2.90 -12.28 -0.04 -1.67 16 3 H 0.12 2.87 7.87 -2.39 -0.02 2.85 16 4 C 0.50 20.60 6.98 87.66 0.61 21.22 16 5 O -0.59 -30.34 14.75 -3.02 -0.04 -30.38 16 6 N -0.71 -29.95 4.96 -446.12 -2.21 -32.16 16 7 C 0.27 14.46 2.56 44.24 0.11 14.57 16 8 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 9 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 10 C -0.55 -29.34 8.73 25.60 0.22 -29.12 16 11 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 12 C 0.01 0.70 5.30 84.65 0.45 1.15 16 13 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 14 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 18 C -0.14 -4.15 4.40 -19.84 -0.09 -4.23 16 19 C -0.05 -1.75 7.91 22.25 0.18 -1.58 16 20 C -0.22 -6.06 9.90 22.40 0.22 -5.84 16 21 C 0.21 4.94 6.75 38.21 0.26 5.20 16 22 N -0.87 -13.55 9.09 -51.37 -0.47 -14.02 16 23 C -0.21 -4.74 9.90 22.40 0.22 -4.52 16 24 C -0.07 -1.75 9.66 22.25 0.21 -1.54 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.22 7.40 -2.39 -0.02 1.21 16 27 H 0.07 1.61 7.56 -2.39 -0.02 1.59 16 28 H 0.40 14.28 7.96 -92.70 -0.74 13.54 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 3.74 6.07 -2.39 -0.01 3.72 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.10 3.44 7.51 -2.91 -0.02 3.42 16 34 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.41 4.43 8.84 -92.71 -0.82 3.61 16 36 H 0.40 5.08 8.84 -92.71 -0.82 4.26 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.14 2.78 7.94 -2.91 -0.02 2.76 16 Total: -1.00 -71.76 318.29 1.93 -69.83 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -1.29 Total: 31.04 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.67 Total: -15.21 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -2.44 Total: -99.66 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.04 Total: -30.38 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -71.76 1.93 -69.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396416629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.218 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds