Wall clock time and date at job start Mon Mar 30 2020 04:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34776 * 119.99682 * 2 1 4 4 O 1.21281 * 120.00078 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99787 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46745 * 60.00005 * 5 3 2 7 7 C 1.52992 * 109.47012 * 299.99705 * 5 3 2 8 8 N 1.46900 * 109.47031 * 179.97438 * 5 3 2 9 9 C 1.46895 * 111.00161 * 204.99988 * 8 5 3 10 10 C 1.50698 * 109.47306 * 180.02562 * 9 8 5 11 11 C 1.38641 * 119.74385 * 269.72885 * 10 9 8 12 12 C 1.37616 * 120.24699 * 179.72362 * 11 10 9 13 13 C 1.40719 * 119.74240 * 0.56682 * 12 11 10 14 14 C 1.41399 * 120.24410 * 179.68488 * 13 12 11 15 15 H 1.07995 * 119.99762 * 24.40476 * 14 13 12 16 16 C 1.39945 * 120.00056 * 204.40225 * 14 13 12 17 17 N 1.30819 * 119.99707 * 17.86481 * 16 14 13 18 18 Si 1.86802 * 120.00171 * 197.86825 * 16 14 13 19 19 H 1.48504 * 109.46888 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47479 * 119.99790 * 18 16 14 21 21 H 1.48501 * 109.47078 * 240.00336 * 18 16 14 22 22 C 1.40714 * 119.51244 * 359.70195 * 13 12 11 23 23 C 1.37619 * 119.74799 * 0.02562 * 22 13 12 24 24 H 1.08995 * 109.46987 * 300.00358 * 1 2 3 25 25 H 1.08996 * 109.46592 * 60.00521 * 1 2 3 26 26 H 1.08995 * 109.46440 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99823 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47027 * 300.00409 * 7 5 3 29 29 H 1.09000 * 109.47357 * 59.99899 * 7 5 3 30 30 H 1.09000 * 109.47195 * 180.02562 * 7 5 3 31 31 H 1.00904 * 110.99870 * 81.04298 * 8 5 3 32 32 H 1.09008 * 109.46802 * 300.00160 * 9 8 5 33 33 H 1.08997 * 109.47117 * 59.99955 * 9 8 5 34 34 H 1.08000 * 119.87477 * 359.96946 * 11 10 9 35 35 H 1.07997 * 120.12990 * 180.27701 * 12 11 10 36 36 H 0.97009 * 120.00110 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.12737 * 179.97438 * 22 13 12 38 38 H 1.07994 * 119.87914 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6460 1.1673 -0.0006 6 1 4.0089 0.6536 -0.8908 7 6 4.1564 0.4458 1.2483 8 7 4.1356 2.5523 -0.0011 9 6 5.4827 2.6342 -0.5812 10 6 5.9507 4.0666 -0.5641 11 6 5.6891 4.8886 -1.6495 12 6 6.1068 6.1999 -1.6425 13 6 6.8121 6.7020 -0.5332 14 6 7.2520 8.0457 -0.5176 15 1 6.7469 8.7862 -1.1200 16 6 8.3418 8.4161 0.2784 17 7 9.1643 7.5031 0.7269 18 14 8.6218 10.2141 0.7006 19 1 7.5586 11.0408 0.0750 20 1 8.5821 10.3885 2.1747 21 1 9.9477 10.6424 0.1870 22 6 7.0767 5.8569 0.5604 23 6 6.6446 4.5506 0.5341 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.9501 -0.8401 0.0004 28 1 3.7933 0.9595 2.1385 29 1 3.7931 -0.5818 1.2483 30 1 5.2464 0.4462 1.2481 31 1 4.1182 2.9423 0.9294 32 1 6.1682 2.0213 0.0042 33 1 5.4584 2.2718 -1.6088 34 1 5.1522 4.4996 -2.5019 35 1 5.8981 6.8398 -2.4871 36 1 9.9200 7.7597 1.2784 37 1 7.6176 6.2318 1.4168 38 1 6.8469 3.9000 1.3720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399059262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:35 Heat of formation + Delta-G solvation = -45.341638 kcal Electronic energy + Delta-G solvation = -18851.018010 eV Core-core repulsion = 15884.689788 eV Total energy + Delta-G solvation = -2966.328222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78701 -39.52099 -37.25978 -35.56407 -35.48740 -32.80975 -31.16499 -30.52728 -27.86021 -27.61547 -25.18958 -23.80663 -22.86827 -21.67158 -21.17894 -19.20883 -18.42447 -17.20155 -17.10756 -16.53008 -16.07304 -15.82234 -15.61357 -15.39767 -14.93887 -14.69137 -14.22009 -14.05683 -13.78608 -13.66273 -13.37300 -13.22077 -13.05960 -12.93361 -12.80631 -12.61319 -12.42347 -12.29875 -12.04126 -11.40539 -11.26094 -10.99516 -10.75641 -10.06463 -9.38915 -9.25206 -9.11100 -8.63405 -6.32204 0.94698 1.17901 1.37512 1.49210 1.53023 1.73152 2.21233 2.26821 2.71975 3.43712 3.81444 3.88924 4.08212 4.15883 4.33577 4.37955 4.49357 4.60898 4.64096 4.65641 4.73042 4.84925 4.86740 4.97399 5.05699 5.17409 5.20095 5.39482 5.49897 5.51308 5.73055 5.95106 6.11782 6.15814 6.24065 6.41291 6.44372 6.69417 6.72276 6.95868 7.06077 7.39583 8.33946 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.041436 B = 0.003499 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.580903 B = 8000.536813 C = 8182.046701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.725 5.725 3 C 0.509 3.491 4 O -0.575 6.575 5 C 0.068 3.932 6 H 0.122 0.878 7 C -0.170 4.170 8 N -0.684 5.684 9 C 0.136 3.864 10 C -0.202 4.202 11 C -0.074 4.074 12 C -0.248 4.248 13 C 0.079 3.921 14 C -0.504 4.504 15 H 0.070 0.930 16 C 0.035 3.965 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.263 1.263 22 C -0.191 4.191 23 C -0.095 4.095 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.114 0.886 27 H 0.418 0.582 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.341 0.659 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.288 0.712 37 H 0.100 0.900 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -17.506 1.713 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.379 5.379 3 C 0.295 3.705 4 O -0.452 6.452 5 C -0.046 4.046 6 H 0.140 0.860 7 C -0.229 4.229 8 N -0.315 5.315 9 C 0.008 3.992 10 C -0.203 4.203 11 C -0.093 4.093 12 C -0.267 4.267 13 C 0.077 3.923 14 C -0.533 4.533 15 H 0.089 0.911 16 C -0.179 4.179 17 N -0.451 5.451 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.188 1.188 22 C -0.210 4.210 23 C -0.114 4.114 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.132 0.868 27 H 0.255 0.745 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.886 -16.646 1.238 18.910 hybrid contribution 0.934 0.453 0.797 1.309 sum -7.952 -16.192 2.035 18.154 Atomic orbital electron populations 1.21621 0.79201 1.04098 1.00990 1.45735 1.08078 1.08502 1.75546 1.21162 0.90825 0.83569 0.74914 1.90701 1.71053 1.33505 1.49976 1.21568 0.90640 0.90596 1.01762 0.86049 1.22399 1.02605 1.01944 0.95991 1.60158 1.25324 1.17444 1.28569 1.20512 0.87250 0.92020 0.99373 1.19357 1.07713 0.96819 0.96451 1.20657 0.97698 0.93239 0.97705 1.21169 1.10453 0.96397 0.98720 1.17977 0.89916 0.93707 0.90741 1.19842 1.13592 0.94919 1.24972 0.91140 1.26738 0.93813 1.04321 0.93040 1.69878 1.10940 1.37486 1.26776 0.85172 0.78985 0.76611 0.78990 1.18500 1.18750 1.18817 1.21262 1.05969 0.94727 0.99063 1.20796 0.98171 0.95071 0.97375 0.93688 0.93825 0.86770 0.74512 0.92972 0.88638 0.90849 0.84066 0.93827 0.90657 0.87346 0.89080 0.90148 0.88181 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.70 127.76 1.37 2.59 16 2 N -0.72 -11.47 5.61 -484.51 -2.72 -14.18 16 3 C 0.51 13.08 7.22 87.66 0.63 13.72 16 4 O -0.57 -21.64 16.43 -3.03 -0.05 -21.69 16 5 C 0.07 1.49 3.00 44.17 0.13 1.62 16 6 H 0.12 2.16 7.80 -2.39 -0.02 2.14 16 7 C -0.17 -2.66 9.06 71.98 0.65 -2.01 16 8 N -0.68 -21.52 5.73 -499.48 -2.86 -24.38 16 9 C 0.14 4.36 5.60 85.56 0.48 4.84 16 10 C -0.20 -8.66 5.41 -19.67 -0.11 -8.77 16 11 C -0.07 -3.46 9.67 22.22 0.21 -3.25 16 12 C -0.25 -13.04 9.80 22.73 0.22 -12.81 16 13 C 0.08 4.49 5.58 -21.29 -0.12 4.37 16 14 C -0.50 -28.61 9.05 23.46 0.21 -28.40 16 15 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 16 C 0.04 1.86 5.14 85.26 0.44 2.29 16 17 N -0.82 -44.22 10.95 21.83 0.24 -43.98 16 18 Si 0.98 39.64 29.60 68.60 2.03 41.67 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.19 -10.36 8.70 22.73 0.20 -10.16 16 23 C -0.10 -4.43 9.67 22.22 0.21 -4.21 16 24 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.42 3.24 8.25 -92.71 -0.76 2.47 16 28 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.09 0.84 7.56 -2.39 -0.02 0.83 16 30 H 0.07 1.14 7.45 -2.39 -0.02 1.12 16 31 H 0.34 11.43 8.46 -89.69 -0.76 10.67 16 32 H 0.04 1.23 7.37 -2.38 -0.02 1.21 16 33 H 0.08 2.24 7.99 -2.39 -0.02 2.22 16 34 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.09 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 37 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 38 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -72.24 322.21 0.73 -71.51 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.45 Total: 31.23 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 4.54 Total: -40.17 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -5.34 Total: -82.54 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -72.24 0.73 -71.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399059262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.167 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds