Wall clock time and date at job start Mon Mar 30 2020 04:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.27056 * 2 1 4 4 C 1.54945 * 110.30910 * 237.80216 * 2 1 3 5 5 C 1.55452 * 100.98714 * 204.68812 * 4 2 1 6 6 H 1.08998 * 110.83285 * 275.88987 * 5 4 2 7 7 N 1.46498 * 110.92225 * 152.22957 * 5 4 2 8 8 C 1.39852 * 120.00017 * 160.75518 * 7 5 4 9 9 C 1.39607 * 119.83817 * 359.97438 * 8 7 5 10 10 C 1.38059 * 120.54796 * 179.97438 * 9 8 7 11 11 C 1.38740 * 120.21971 * 0.04575 * 10 9 8 12 12 N 1.38872 * 120.16177 * 179.97438 * 11 10 9 13 13 C 1.41559 * 119.67379 * 359.97438 * 11 10 9 14 14 C 1.41028 * 120.26218 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00540 * 329.54618 * 14 13 11 16 16 C 1.39891 * 119.99569 * 149.54351 * 14 13 11 17 17 N 1.30902 * 119.99820 * 162.12933 * 16 14 13 18 18 Si 1.86802 * 120.00179 * 342.13003 * 16 14 13 19 19 H 1.48493 * 109.47130 * 95.39399 * 18 16 14 20 20 H 1.48501 * 109.47284 * 215.40057 * 18 16 14 21 21 H 1.48505 * 109.46948 * 335.39440 * 18 16 14 22 22 C 1.38003 * 119.83873 * 179.72510 * 8 7 5 23 23 C 1.54380 * 102.18807 * 34.04136 * 5 4 2 24 24 O 1.43247 * 107.66234 * 338.73863 * 23 5 4 25 25 H 1.09004 * 109.46969 * 299.36197 * 1 2 3 26 26 H 1.08992 * 109.47389 * 59.36772 * 1 2 3 27 27 H 1.08999 * 109.46692 * 179.36730 * 1 2 3 28 28 H 1.08994 * 111.12551 * 322.55693 * 4 2 1 29 29 H 1.09004 * 111.12342 * 86.71822 * 4 2 1 30 30 H 0.97004 * 120.00145 * 340.74521 * 7 5 4 31 31 H 1.07997 * 119.72382 * 359.97438 * 9 8 7 32 32 H 1.07999 * 119.89080 * 180.02562 * 10 9 8 33 33 H 0.96997 * 119.99375 * 0.02562 * 12 11 10 34 34 H 0.96998 * 119.99588 * 180.02562 * 12 11 10 35 35 H 0.96999 * 119.99755 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.11876 * 359.97438 * 22 8 7 37 37 H 1.09002 * 109.83251 * 219.18326 * 23 5 4 38 38 H 1.08993 * 109.83056 * 98.29749 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2297 5 6 3.4710 -1.2053 -0.7179 6 1 4.1992 -0.4078 -0.8654 7 7 3.9094 -2.4410 -1.3714 8 6 5.2643 -2.7872 -1.3753 9 6 6.1964 -1.9526 -0.7558 10 6 7.5374 -2.2805 -0.7504 11 6 7.9738 -3.4461 -1.3634 12 7 9.3231 -3.7745 -1.3577 13 6 7.0369 -4.2990 -1.9947 14 6 7.4668 -5.4866 -2.6221 15 1 8.4517 -5.5390 -3.0620 16 6 6.6175 -6.5970 -2.6744 17 7 6.8490 -7.5582 -3.5324 18 14 5.1531 -6.7080 -1.5201 19 1 3.9393 -6.2025 -2.2102 20 1 4.9429 -8.1231 -1.1217 21 1 5.4129 -5.8868 -0.3104 22 6 5.6729 -3.9549 -1.9870 23 6 3.2113 -1.4412 0.7855 24 8 2.0286 -0.7156 1.1414 25 1 -0.3633 0.5039 0.8957 26 1 -0.3634 0.5236 -0.8842 27 1 -0.3633 -1.0276 -0.0113 28 1 1.4471 -1.6429 -1.4491 29 1 2.1496 -0.1223 -2.0994 30 1 3.2598 -3.0191 -1.8014 31 1 5.8655 -1.0430 -0.2769 32 1 8.2493 -1.6273 -0.2676 33 1 9.9630 -3.1885 -0.9241 34 1 9.6256 -4.5898 -1.7873 35 1 6.2598 -8.3279 -3.5690 36 1 4.9485 -4.6004 -2.4614 37 1 4.0576 -1.0776 1.3684 38 1 3.0631 -2.5046 0.9727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402011591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:31 Heat of formation + Delta-G solvation = -26.006214 kcal Electronic energy + Delta-G solvation = -19641.472696 eV Core-core repulsion = 16675.982922 eV Total energy + Delta-G solvation = -2965.489775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67114 -38.09041 -35.37013 -33.42363 -32.52788 -32.01082 -30.26443 -29.56893 -26.23094 -25.81590 -24.76208 -21.96737 -21.21548 -21.07047 -19.54015 -17.33756 -16.98239 -16.35370 -16.01693 -15.55267 -15.16322 -14.88215 -14.55202 -13.80481 -13.55083 -13.08799 -12.95779 -12.81880 -12.55222 -12.29989 -12.08191 -11.89019 -11.70451 -11.48971 -11.31213 -11.14657 -10.79325 -10.73811 -10.50601 -10.06980 -9.80949 -9.54295 -9.46312 -9.04761 -8.02709 -7.54245 -6.83437 -5.87591 -4.23135 2.72528 2.98556 3.18136 3.33722 3.42193 3.71294 4.08776 4.14626 4.50387 4.65444 4.79108 4.94978 5.17055 5.22042 5.25321 5.27038 5.52024 5.56270 5.63705 5.74599 5.87950 5.98350 6.02829 6.08690 6.16428 6.33906 6.70146 6.76620 7.04434 7.13112 7.24527 7.36028 7.49228 7.69052 7.93243 8.26205 8.38813 8.53776 8.59955 8.86053 9.03981 9.10943 10.19889 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005755 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.078002 B = 4864.459410 C = 5679.283615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 H 0.070 0.930 4 C -0.160 4.160 5 C 0.135 3.865 6 H 0.090 0.910 7 N -0.751 5.751 8 C 0.194 3.806 9 C -0.255 4.255 10 C -0.144 4.144 11 C 0.101 3.899 12 N -0.885 5.885 13 C 0.081 3.919 14 C -0.451 4.451 15 H 0.087 0.913 16 C 0.085 3.915 17 N -0.821 5.821 18 Si 0.915 3.085 19 H -0.276 1.276 20 H -0.297 1.297 21 H -0.245 1.245 22 C -0.271 4.271 23 C 0.033 3.967 24 O -0.384 6.384 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.390 0.610 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.377 0.623 34 H 0.393 0.607 35 H 0.281 0.719 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 10.665 4.651 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.088 0.912 4 C -0.198 4.198 5 C 0.027 3.973 6 H 0.108 0.892 7 N -0.385 5.385 8 C 0.096 3.904 9 C -0.279 4.279 10 C -0.169 4.169 11 C -0.001 4.001 12 N -0.427 5.427 13 C 0.076 3.924 14 C -0.480 4.480 15 H 0.105 0.895 16 C -0.132 4.132 17 N -0.446 5.446 18 Si 0.743 3.257 19 H -0.203 1.203 20 H -0.225 1.225 21 H -0.168 1.168 22 C -0.295 4.295 23 C -0.046 4.046 24 O -0.303 6.303 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.224 0.776 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.202 0.798 34 H 0.222 0.778 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.145 10.566 4.793 14.176 hybrid contribution -0.431 -0.539 0.038 0.691 sum -8.576 10.026 4.831 14.051 Atomic orbital electron populations 1.21880 0.93889 1.02769 1.02189 1.22851 0.94753 0.95525 0.84957 0.91177 1.23578 0.96414 1.01208 0.98622 1.22124 0.95085 0.89156 0.90954 0.89182 1.44309 1.05766 1.24099 1.64357 1.17338 0.82224 0.94065 0.96816 1.19624 0.92451 1.01927 1.13905 1.19791 0.94884 0.96785 1.05437 1.17767 0.84879 0.96202 1.01272 1.41878 1.04758 1.28655 1.67444 1.17123 0.90076 0.93283 0.91949 1.19096 1.02576 0.95051 1.31319 0.89530 1.26053 0.97922 0.94989 0.94240 1.69735 1.37033 1.08584 1.29276 0.86237 0.80507 0.76160 0.82804 1.20291 1.22547 1.16809 1.20192 0.96070 0.99019 1.14217 1.23807 0.87146 0.97025 0.96605 1.88405 1.43098 1.65057 1.33767 0.91963 0.91345 0.91984 0.90036 0.89572 0.77589 0.89124 0.89087 0.79765 0.77814 0.90845 0.88315 0.91187 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.62 37.16 0.36 -1.03 16 2 C 0.08 0.87 4.08 -25.70 -0.10 0.76 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.16 -1.84 6.20 -24.40 -0.15 -1.99 16 5 C 0.13 1.95 2.91 -65.91 -0.19 1.76 16 6 H 0.09 1.32 6.68 -51.93 -0.35 0.97 16 7 N -0.75 -13.18 5.32 -50.22 -0.27 -13.44 16 8 C 0.19 4.15 6.64 -83.77 -0.56 3.59 16 9 C -0.26 -5.29 9.22 -39.14 -0.36 -5.65 16 10 C -0.14 -3.05 9.86 -39.46 -0.39 -3.44 16 11 C 0.10 2.30 6.79 -83.22 -0.56 1.74 16 12 N -0.89 -17.36 8.98 32.75 0.29 -17.06 16 13 C 0.08 2.05 5.11 -106.66 -0.54 1.50 16 14 C -0.45 -12.02 8.91 -37.91 -0.34 -12.36 16 15 H 0.09 2.38 7.03 -52.49 -0.37 2.01 16 16 C 0.08 2.24 5.41 -17.33 -0.09 2.15 16 17 N -0.82 -22.12 13.93 55.55 0.77 -21.34 16 18 Si 0.92 21.45 24.52 -169.99 -4.17 17.29 16 19 H -0.28 -6.27 6.71 56.52 0.38 -5.89 16 20 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.24 -5.96 6.85 56.52 0.39 -5.58 16 22 C -0.27 -6.51 6.98 -38.75 -0.27 -6.78 16 23 C 0.03 0.48 7.55 37.88 0.29 0.77 16 24 O -0.38 -5.54 11.04 -35.23 -0.39 -5.93 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.39 6.52 8.52 -40.82 -0.35 6.17 16 31 H 0.09 1.68 6.28 -52.49 -0.33 1.35 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.38 6.14 8.83 -40.82 -0.36 5.78 16 34 H 0.39 7.80 7.13 -40.82 -0.29 7.50 16 35 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 36 H 0.10 2.40 4.75 -52.49 -0.25 2.15 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.19 8.02 -51.93 -0.42 0.77 16 LS Contribution 304.09 15.07 4.58 4.58 Total: -1.00 -28.57 304.09 -7.35 -35.92 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -5.25 Total: 18.98 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.92 Total: -18.99 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.80 Total: -51.85 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.39 Total: -5.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.17 Total: 17.29 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.57 -7.35 -35.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402011591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.913 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds