Wall clock time and date at job start Mon Mar 30 2020 04:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.27056 * 2 1 4 4 C 1.54945 * 110.30910 * 237.80216 * 2 1 3 5 5 C 1.55452 * 100.98714 * 204.68812 * 4 2 1 6 6 H 1.08998 * 110.83285 * 275.88987 * 5 4 2 7 7 N 1.46498 * 110.92225 * 152.22957 * 5 4 2 8 8 C 1.39852 * 120.00017 * 160.75518 * 7 5 4 9 9 C 1.39607 * 119.83817 * 359.97438 * 8 7 5 10 10 C 1.38059 * 120.54796 * 179.97438 * 9 8 7 11 11 C 1.38740 * 120.21971 * 0.04575 * 10 9 8 12 12 N 1.38872 * 120.16177 * 179.97438 * 11 10 9 13 13 C 1.41559 * 119.67379 * 359.97438 * 11 10 9 14 14 C 1.41028 * 120.26218 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00540 * 329.54618 * 14 13 11 16 16 C 1.39891 * 119.99569 * 149.54351 * 14 13 11 17 17 N 1.30902 * 119.99820 * 162.12933 * 16 14 13 18 18 Si 1.86802 * 120.00179 * 342.13003 * 16 14 13 19 19 H 1.48493 * 109.47130 * 95.39399 * 18 16 14 20 20 H 1.48501 * 109.47284 * 215.40057 * 18 16 14 21 21 H 1.48505 * 109.46948 * 335.39440 * 18 16 14 22 22 C 1.38003 * 119.83873 * 179.72510 * 8 7 5 23 23 C 1.54380 * 102.18807 * 34.04136 * 5 4 2 24 24 O 1.43247 * 107.66234 * 338.73863 * 23 5 4 25 25 H 1.09004 * 109.46969 * 299.36197 * 1 2 3 26 26 H 1.08992 * 109.47389 * 59.36772 * 1 2 3 27 27 H 1.08999 * 109.46692 * 179.36730 * 1 2 3 28 28 H 1.08994 * 111.12551 * 322.55693 * 4 2 1 29 29 H 1.09004 * 111.12342 * 86.71822 * 4 2 1 30 30 H 0.97004 * 120.00145 * 340.74521 * 7 5 4 31 31 H 1.07997 * 119.72382 * 359.97438 * 9 8 7 32 32 H 1.07999 * 119.89080 * 180.02562 * 10 9 8 33 33 H 0.96997 * 119.99375 * 0.02562 * 12 11 10 34 34 H 0.96998 * 119.99588 * 180.02562 * 12 11 10 35 35 H 0.96999 * 119.99755 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.11876 * 359.97438 * 22 8 7 37 37 H 1.09002 * 109.83251 * 219.18326 * 23 5 4 38 38 H 1.08993 * 109.83056 * 98.29749 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2297 5 6 3.4710 -1.2053 -0.7179 6 1 4.1992 -0.4078 -0.8654 7 7 3.9094 -2.4410 -1.3714 8 6 5.2643 -2.7872 -1.3753 9 6 6.1964 -1.9526 -0.7558 10 6 7.5374 -2.2805 -0.7504 11 6 7.9738 -3.4461 -1.3634 12 7 9.3231 -3.7745 -1.3577 13 6 7.0369 -4.2990 -1.9947 14 6 7.4668 -5.4866 -2.6221 15 1 8.4517 -5.5390 -3.0620 16 6 6.6175 -6.5970 -2.6744 17 7 6.8490 -7.5582 -3.5324 18 14 5.1531 -6.7080 -1.5201 19 1 3.9393 -6.2025 -2.2102 20 1 4.9429 -8.1231 -1.1217 21 1 5.4129 -5.8868 -0.3104 22 6 5.6729 -3.9549 -1.9870 23 6 3.2113 -1.4412 0.7855 24 8 2.0286 -0.7156 1.1414 25 1 -0.3633 0.5039 0.8957 26 1 -0.3634 0.5236 -0.8842 27 1 -0.3633 -1.0276 -0.0113 28 1 1.4471 -1.6429 -1.4491 29 1 2.1496 -0.1223 -2.0994 30 1 3.2598 -3.0191 -1.8014 31 1 5.8655 -1.0430 -0.2769 32 1 8.2493 -1.6273 -0.2676 33 1 9.9630 -3.1885 -0.9241 34 1 9.6256 -4.5898 -1.7873 35 1 6.2598 -8.3279 -3.5690 36 1 4.9485 -4.6004 -2.4614 37 1 4.0576 -1.0776 1.3684 38 1 3.0631 -2.5046 0.9727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402011591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:30 Heat of formation + Delta-G solvation = -46.068489 kcal Electronic energy + Delta-G solvation = -19642.342662 eV Core-core repulsion = 16675.982922 eV Total energy + Delta-G solvation = -2966.359740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80951 -39.72031 -36.85032 -35.30990 -33.94015 -33.00059 -32.08395 -30.88839 -27.70152 -26.97831 -26.49498 -23.59758 -22.48939 -22.16678 -21.13757 -19.10029 -18.30099 -17.73470 -17.63416 -16.86678 -16.68360 -16.30375 -16.04275 -15.06369 -14.91340 -14.71125 -14.39178 -14.24805 -13.87314 -13.60421 -13.46373 -13.34182 -13.04571 -12.82478 -12.67177 -12.58607 -12.33243 -12.14057 -11.77527 -11.67628 -11.56135 -11.32255 -10.91148 -10.50319 -9.54641 -9.37983 -8.78610 -7.54625 -6.16311 0.90887 1.19147 1.28362 1.52048 1.52778 2.18532 2.53776 2.75316 3.01411 3.48770 3.67557 3.70783 3.87723 3.98943 4.10088 4.24693 4.40799 4.44679 4.66177 4.69061 4.76471 4.82739 4.89225 4.94362 4.96806 5.07741 5.16715 5.30553 5.37568 5.47078 5.63886 5.78366 5.95963 6.06083 6.16842 6.33584 6.66704 6.82492 6.95062 7.05251 7.29205 7.57452 8.30235 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005755 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.078002 B = 4864.459410 C = 5679.283615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.086 0.914 4 C -0.151 4.151 5 C 0.130 3.870 6 H 0.096 0.904 7 N -0.746 5.746 8 C 0.189 3.811 9 C -0.242 4.242 10 C -0.144 4.144 11 C 0.086 3.914 12 N -0.878 5.878 13 C 0.051 3.949 14 C -0.475 4.475 15 H 0.062 0.938 16 C 0.049 3.951 17 N -0.863 5.863 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.260 1.260 22 C -0.280 4.280 23 C 0.037 3.963 24 O -0.400 6.400 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.394 0.606 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.394 0.606 34 H 0.390 0.610 35 H 0.287 0.713 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 13.343 5.722 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.104 0.896 4 C -0.189 4.189 5 C 0.023 3.977 6 H 0.114 0.886 7 N -0.380 5.380 8 C 0.088 3.912 9 C -0.266 4.266 10 C -0.168 4.168 11 C -0.017 4.017 12 N -0.421 5.421 13 C 0.046 3.954 14 C -0.506 4.506 15 H 0.080 0.920 16 C -0.163 4.163 17 N -0.491 5.491 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.184 1.184 22 C -0.304 4.304 23 C -0.042 4.042 24 O -0.320 6.320 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.228 0.772 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.222 0.778 34 H 0.218 0.782 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.623 13.278 5.875 17.418 hybrid contribution 0.005 -1.106 -0.208 1.126 sum -9.617 12.171 5.666 16.515 Atomic orbital electron populations 1.21894 0.92386 1.02732 1.03462 1.23121 0.95992 0.95802 0.83664 0.89616 1.23569 0.94250 1.01621 0.99421 1.22306 0.96907 0.87731 0.90711 0.88644 1.44364 1.04345 1.25188 1.64098 1.17417 0.84229 0.93272 0.96242 1.20056 0.92210 1.02260 1.12035 1.20196 0.95840 0.96343 1.04446 1.17989 0.85746 0.96598 1.01377 1.41805 1.04164 1.28852 1.67255 1.17295 0.91332 0.93576 0.93218 1.19100 1.02005 0.96440 1.33037 0.91979 1.26597 0.99852 0.94718 0.95148 1.69770 1.38693 1.09616 1.31029 0.85458 0.78668 0.76043 0.80603 1.19241 1.21761 1.18428 1.20291 0.95618 0.99996 1.14541 1.23657 0.87561 0.96168 0.96784 1.88400 1.42859 1.65325 1.35369 0.91719 0.89064 0.92716 0.89963 0.87574 0.77212 0.86215 0.85962 0.77754 0.78166 0.90321 0.89233 0.91138 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.62 71.98 0.69 -1.56 16 2 C 0.07 1.37 4.08 31.26 0.13 1.49 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.15 -2.94 6.20 32.10 0.20 -2.74 16 5 C 0.13 3.36 2.91 46.30 0.13 3.49 16 6 H 0.10 2.40 6.68 -2.39 -0.02 2.38 16 7 N -0.75 -24.45 5.32 -312.80 -1.66 -26.12 16 8 C 0.19 7.71 6.64 38.14 0.25 7.96 16 9 C -0.24 -9.25 9.22 22.56 0.21 -9.05 16 10 C -0.14 -5.67 9.86 22.35 0.22 -5.45 16 11 C 0.09 3.85 6.79 38.97 0.26 4.11 16 12 N -0.88 -33.90 8.98 -50.30 -0.45 -34.35 16 13 C 0.05 2.61 5.11 -21.18 -0.11 2.50 16 14 C -0.47 -26.29 8.91 23.35 0.21 -26.08 16 15 H 0.06 3.61 7.03 -2.91 -0.02 3.59 16 16 C 0.05 2.67 5.41 85.23 0.46 3.13 16 17 N -0.86 -48.27 13.93 21.82 0.30 -47.96 16 18 Si 0.97 45.14 24.52 68.60 1.68 46.82 16 19 H -0.27 -11.81 6.71 99.48 0.67 -11.15 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.26 -12.63 6.85 99.48 0.68 -11.95 16 22 C -0.28 -13.37 6.98 22.81 0.16 -13.21 16 23 C 0.04 1.01 7.55 72.45 0.55 1.56 16 24 O -0.40 -10.53 11.04 -148.98 -1.64 -12.17 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.62 7.91 -2.39 -0.02 1.60 16 29 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.39 12.39 8.52 -92.71 -0.79 11.60 16 31 H 0.12 3.88 6.28 -2.91 -0.02 3.86 16 32 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 33 H 0.39 12.19 8.83 -92.71 -0.82 11.37 16 34 H 0.39 15.77 7.13 -92.71 -0.66 15.10 16 35 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 36 H 0.09 4.36 4.75 -2.91 -0.01 4.35 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.71 8.02 -2.39 -0.02 1.69 16 Total: -1.00 -62.17 304.09 0.36 -61.80 By element: Atomic # 1 Polarization: 47.05 SS G_CDS: -1.23 Total: 45.82 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 3.37 Total: -33.84 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -1.81 Total: -108.43 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.64 Total: -12.17 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.68 Total: 46.82 kcal Total: -62.17 0.36 -61.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402011591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.734 kcal (2) G-P(sol) polarization free energy of solvation -62.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds