Wall clock time and date at job start Mon Mar 30 2020 04:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47363 * 60.99212 * 3 2 1 5 5 C 1.37102 * 119.99948 * 95.93341 * 4 3 2 6 6 H 1.08000 * 119.99835 * 162.23852 * 5 4 3 7 7 C 1.38950 * 119.99508 * 341.96192 * 5 4 3 8 8 N 1.31412 * 120.00389 * 339.33096 * 7 5 4 9 9 Si 1.86803 * 119.99523 * 159.33875 * 7 5 4 10 10 H 1.48499 * 109.47485 * 59.99715 * 9 7 5 11 11 H 1.48505 * 109.46936 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47068 * 299.99572 * 9 7 5 13 13 C 1.34773 * 120.00249 * 275.93352 * 4 3 2 14 14 O 1.21290 * 120.00376 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99748 * 359.97438 * 13 4 3 16 16 H 1.08997 * 110.36862 * 40.70601 * 15 13 4 17 17 C 1.54382 * 110.41271 * 278.34892 * 15 13 4 18 18 C 1.54252 * 105.06127 * 217.37130 * 17 15 13 19 19 C 1.54379 * 105.06168 * 359.97438 * 18 17 15 20 20 H 1.09004 * 110.41385 * 265.07338 * 19 18 17 21 21 C 1.53005 * 110.41025 * 142.75126 * 19 18 17 22 22 C 1.52994 * 117.49923 * 248.74665 * 21 19 18 23 23 C 1.53004 * 117.49710 * 180.08724 * 21 19 18 24 24 N 1.48566 * 110.41130 * 163.05260 * 15 13 4 25 25 H 4.40640 * 5.51402 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.47129 * 300.99228 * 3 2 1 27 27 H 1.09001 * 109.47022 * 180.99299 * 3 2 1 28 28 H 0.97002 * 119.99992 * 180.02562 * 8 7 5 29 29 H 1.09003 * 110.31858 * 336.26442 * 17 15 13 30 30 H 1.09001 * 110.32006 * 98.36828 * 17 15 13 31 31 H 1.09006 * 110.32865 * 118.89478 * 18 17 15 32 32 H 1.09004 * 110.32433 * 240.99998 * 18 17 15 33 33 H 1.08998 * 115.54942 * 34.41782 * 21 19 18 34 34 H 1.09008 * 117.50035 * 359.97438 * 22 21 19 35 35 H 1.08998 * 117.50245 * 145.02241 * 22 21 19 36 36 H 1.08996 * 117.49766 * 214.97960 * 23 21 19 37 37 H 1.09002 * 117.49835 * 359.97438 * 23 21 19 38 38 H 1.00904 * 110.99807 * 277.81615 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6689 -1.2079 5 6 3.4786 0.0705 -2.3100 6 1 4.0957 -0.3655 -3.0817 7 6 3.0284 1.3789 -2.4368 8 7 1.9797 1.7820 -1.7552 9 14 3.9139 2.5649 -3.5765 10 1 3.8789 2.0374 -4.9642 11 1 3.2412 3.8882 -3.5334 12 1 5.3251 2.7120 -3.1383 13 6 3.2462 -2.0117 -1.2358 14 8 3.6504 -2.5661 -2.2360 15 6 2.8687 -2.8245 -0.0241 16 1 1.9627 -2.4263 0.4325 17 6 4.0260 -2.8371 0.9976 18 6 4.0178 -4.2593 1.5949 19 6 2.8559 -4.9862 0.8843 20 1 1.9475 -4.9281 1.4841 21 6 3.2245 -6.4468 0.6163 22 6 3.4372 -6.8660 -0.8396 23 6 2.1839 -7.3203 -0.0873 24 7 2.6782 -4.2503 -0.3955 25 1 -1.0498 0.0001 -0.0003 26 1 3.0096 -0.5284 0.8810 27 1 3.0089 1.0283 0.0178 28 1 1.6653 2.6953 -1.8440 29 1 4.9747 -2.6421 0.4974 30 1 3.8505 -2.0962 1.7775 31 1 4.9624 -4.7624 1.3880 32 1 3.8392 -4.2177 2.6694 33 1 3.8502 -6.9201 1.3729 34 1 3.3141 -6.1013 -1.6067 35 1 4.2026 -7.6154 -1.0409 36 1 2.1253 -8.3684 0.2061 37 1 1.2365 -6.8545 -0.3590 38 1 1.7573 -4.4043 -0.7781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407387762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:39 Heat of formation + Delta-G solvation = 68.238637 kcal Electronic energy + Delta-G solvation = -20099.538938 eV Core-core repulsion = 17138.135926 eV Total energy + Delta-G solvation = -2961.403011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50367 -37.93280 -35.61803 -34.93220 -32.10033 -31.18907 -30.00963 -28.91307 -26.39408 -24.88856 -22.88808 -22.11362 -21.06434 -19.43610 -18.80447 -17.85737 -16.73425 -16.48614 -16.10292 -15.36381 -14.80734 -14.34436 -13.94857 -13.90045 -13.19103 -13.13333 -12.64005 -12.31621 -12.22486 -11.85942 -11.64777 -11.52928 -11.26283 -11.08101 -11.05468 -10.89465 -10.53792 -10.46966 -10.28717 -9.97688 -9.79078 -9.37306 -9.24057 -8.87263 -8.49483 -7.96832 -7.80225 -6.28890 -3.81663 3.19938 3.26889 3.30366 3.65478 3.92329 3.96745 4.04057 4.17717 4.41604 4.74818 4.87788 5.07125 5.11898 5.13196 5.28135 5.29384 5.33323 5.47037 5.62370 5.66253 5.78604 5.81621 5.92801 5.99856 6.03614 6.15764 6.22049 6.32070 6.34917 6.45528 6.65517 6.75766 7.01793 7.05572 7.59385 7.60517 8.12432 8.49184 8.79156 9.20068 9.41227 9.99857 10.72127 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.005584 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.153182 B = 5013.054800 C = 5385.671335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.111 4.111 3 C 0.231 3.769 4 N -0.445 5.445 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.867 5.867 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.465 3.535 14 O -0.560 6.560 15 C 0.056 3.944 16 H 0.060 0.940 17 C -0.113 4.113 18 C -0.113 4.113 19 C 0.093 3.907 20 H 0.048 0.952 21 C -0.143 4.143 22 C -0.159 4.159 23 C -0.190 4.190 24 N -0.629 5.629 25 H 0.198 0.802 26 H 0.060 0.940 27 H 0.109 0.891 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 -8.949 9.251 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.113 4.113 3 C 0.108 3.892 4 N -0.165 5.165 5 C -0.440 4.440 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.505 5.505 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.252 3.748 14 O -0.441 6.441 15 C -0.057 4.057 16 H 0.078 0.922 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.017 4.017 20 H 0.066 0.934 21 C -0.162 4.162 22 C -0.196 4.196 23 C -0.227 4.227 24 N -0.258 5.258 25 H 0.215 0.785 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.874 -9.156 8.433 12.479 hybrid contribution -1.014 1.063 -0.019 1.470 sum -0.140 -8.093 8.413 11.675 Atomic orbital electron populations 1.24268 0.95380 1.04956 1.03764 1.23273 0.94448 0.96546 0.97039 1.18300 0.84116 1.00044 0.86774 1.43665 1.56794 1.03885 1.12169 1.19602 1.29719 0.93978 1.00669 0.87960 1.25260 0.95180 0.98571 0.98348 1.70069 1.19881 1.18238 1.42306 0.86085 0.79547 0.79069 0.80544 1.19925 1.21117 1.19937 1.19746 0.84247 0.82102 0.88716 1.90524 1.49429 1.70103 1.34040 1.22374 0.98203 0.89961 0.95185 0.92203 1.22250 0.99067 0.96649 0.97140 1.22267 0.98819 0.95412 0.98564 1.21940 0.97083 0.91998 0.90628 0.93399 1.22195 1.03112 0.93997 0.96860 1.22982 0.98193 1.02863 0.95591 1.22938 0.94501 0.99170 1.06057 1.63314 1.34652 1.04484 1.23330 0.78456 0.92163 0.87288 0.92204 0.90523 0.91103 0.90859 0.91573 0.88018 0.86330 0.89894 0.89566 0.89346 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.47 19.25 29.55 0.57 -4.91 16 2 C -0.11 -2.49 10.53 -37.12 -0.39 -2.88 16 3 C 0.23 5.08 4.81 -6.83 -0.03 5.05 16 4 N -0.45 -11.20 2.60 -117.93 -0.31 -11.50 16 5 C -0.31 -8.62 9.32 -14.93 -0.14 -8.75 16 6 H 0.10 2.98 7.39 -52.49 -0.39 2.60 16 7 C 0.03 0.79 4.88 -17.47 -0.09 0.70 16 8 N -0.87 -22.80 9.45 55.50 0.52 -22.27 16 9 Si 0.92 20.60 29.60 -169.99 -5.03 15.57 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.46 11.31 6.74 -10.98 -0.07 11.24 16 14 O -0.56 -15.75 16.23 5.55 0.09 -15.66 16 15 C 0.06 1.05 2.61 -67.22 -0.18 0.88 16 16 H 0.06 1.11 6.57 -51.93 -0.34 0.77 16 17 C -0.11 -1.77 5.96 -25.35 -0.15 -1.92 16 18 C -0.11 -1.47 6.54 -25.35 -0.17 -1.64 16 19 C 0.09 1.28 3.51 -66.00 -0.23 1.05 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 C -0.14 -1.77 5.59 -90.62 -0.51 -2.28 16 22 C -0.16 -2.12 9.87 -26.70 -0.26 -2.39 16 23 C -0.19 -2.19 10.24 -26.69 -0.27 -2.47 16 24 N -0.63 -10.80 4.86 -96.99 -0.47 -11.27 16 25 H 0.20 3.33 7.80 -54.10 -0.42 2.91 16 26 H 0.06 1.11 5.51 -51.92 -0.29 0.82 16 27 H 0.11 2.53 6.45 -51.93 -0.33 2.20 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.08 1.33 7.85 -51.93 -0.41 0.92 16 30 H 0.07 0.97 7.09 -51.93 -0.37 0.61 16 31 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 34 H 0.12 1.93 6.96 -51.92 -0.36 1.56 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.33 5.63 8.93 -39.29 -0.35 5.28 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -30.88 313.49 -7.73 -38.61 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.34 Total: 10.11 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.92 Total: -8.32 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.25 Total: -45.04 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.09 Total: -15.66 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.88 -7.73 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407387762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.847 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds