Wall clock time and date at job start Mon Mar 30 2020 04:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47363 * 60.99212 * 3 2 1 5 5 C 1.37102 * 119.99948 * 95.93341 * 4 3 2 6 6 H 1.08000 * 119.99835 * 162.23852 * 5 4 3 7 7 C 1.38950 * 119.99508 * 341.96192 * 5 4 3 8 8 N 1.31412 * 120.00389 * 339.33096 * 7 5 4 9 9 Si 1.86803 * 119.99523 * 159.33875 * 7 5 4 10 10 H 1.48499 * 109.47485 * 59.99715 * 9 7 5 11 11 H 1.48505 * 109.46936 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47068 * 299.99572 * 9 7 5 13 13 C 1.34773 * 120.00249 * 275.93352 * 4 3 2 14 14 O 1.21290 * 120.00376 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99748 * 359.97438 * 13 4 3 16 16 H 1.08997 * 110.36862 * 40.70601 * 15 13 4 17 17 C 1.54382 * 110.41271 * 278.34892 * 15 13 4 18 18 C 1.54252 * 105.06127 * 217.37130 * 17 15 13 19 19 C 1.54379 * 105.06168 * 359.97438 * 18 17 15 20 20 H 1.09004 * 110.41385 * 265.07338 * 19 18 17 21 21 C 1.53005 * 110.41025 * 142.75126 * 19 18 17 22 22 C 1.52994 * 117.49923 * 248.74665 * 21 19 18 23 23 C 1.53004 * 117.49710 * 180.08724 * 21 19 18 24 24 N 1.48566 * 110.41130 * 163.05260 * 15 13 4 25 25 H 4.40640 * 5.51402 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.47129 * 300.99228 * 3 2 1 27 27 H 1.09001 * 109.47022 * 180.99299 * 3 2 1 28 28 H 0.97002 * 119.99992 * 180.02562 * 8 7 5 29 29 H 1.09003 * 110.31858 * 336.26442 * 17 15 13 30 30 H 1.09001 * 110.32006 * 98.36828 * 17 15 13 31 31 H 1.09006 * 110.32865 * 118.89478 * 18 17 15 32 32 H 1.09004 * 110.32433 * 240.99998 * 18 17 15 33 33 H 1.08998 * 115.54942 * 34.41782 * 21 19 18 34 34 H 1.09008 * 117.50035 * 359.97438 * 22 21 19 35 35 H 1.08998 * 117.50245 * 145.02241 * 22 21 19 36 36 H 1.08996 * 117.49766 * 214.97960 * 23 21 19 37 37 H 1.09002 * 117.49835 * 359.97438 * 23 21 19 38 38 H 1.00904 * 110.99807 * 277.81615 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6689 -1.2079 5 6 3.4786 0.0705 -2.3100 6 1 4.0957 -0.3655 -3.0817 7 6 3.0284 1.3789 -2.4368 8 7 1.9797 1.7820 -1.7552 9 14 3.9139 2.5649 -3.5765 10 1 3.8789 2.0374 -4.9642 11 1 3.2412 3.8882 -3.5334 12 1 5.3251 2.7120 -3.1383 13 6 3.2462 -2.0117 -1.2358 14 8 3.6504 -2.5661 -2.2360 15 6 2.8687 -2.8245 -0.0241 16 1 1.9627 -2.4263 0.4325 17 6 4.0260 -2.8371 0.9976 18 6 4.0178 -4.2593 1.5949 19 6 2.8559 -4.9862 0.8843 20 1 1.9475 -4.9281 1.4841 21 6 3.2245 -6.4468 0.6163 22 6 3.4372 -6.8660 -0.8396 23 6 2.1839 -7.3203 -0.0873 24 7 2.6782 -4.2503 -0.3955 25 1 -1.0498 0.0001 -0.0003 26 1 3.0096 -0.5284 0.8810 27 1 3.0089 1.0283 0.0178 28 1 1.6653 2.6953 -1.8440 29 1 4.9747 -2.6421 0.4974 30 1 3.8505 -2.0962 1.7775 31 1 4.9624 -4.7624 1.3880 32 1 3.8392 -4.2177 2.6694 33 1 3.8502 -6.9201 1.3729 34 1 3.3141 -6.1013 -1.6067 35 1 4.2026 -7.6154 -1.0409 36 1 2.1253 -8.3684 0.2061 37 1 1.2365 -6.8545 -0.3590 38 1 1.7573 -4.4043 -0.7781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407387762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:39 Heat of formation + Delta-G solvation = 49.127557 kcal Electronic energy + Delta-G solvation = -20100.367656 eV Core-core repulsion = 17138.135926 eV Total energy + Delta-G solvation = -2962.231730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.03264 -39.38899 -37.08055 -36.59568 -33.99539 -33.01708 -31.24360 -30.28545 -28.18084 -26.69714 -24.30475 -23.09558 -22.31866 -20.55115 -20.45861 -19.67326 -18.47936 -18.01575 -17.61115 -16.81136 -16.27349 -15.89533 -15.68841 -15.41225 -14.61752 -14.44760 -14.18356 -13.99755 -13.94409 -13.45317 -13.04469 -12.88012 -12.79246 -12.51738 -12.37817 -12.25802 -12.16920 -12.11000 -11.61508 -11.16751 -11.11027 -10.96448 -10.78565 -10.62788 -10.25942 -9.79147 -9.40366 -8.29851 -5.90770 1.38265 1.42142 1.51765 1.89493 2.15112 2.31946 2.37180 2.87025 3.04820 3.07685 3.50469 3.65456 3.81790 3.85268 4.01566 4.14053 4.15929 4.21740 4.31681 4.39404 4.61318 4.68236 4.79271 4.81623 4.89379 4.96389 4.99257 5.09334 5.18837 5.25370 5.34605 5.41042 5.47958 5.55298 5.79047 6.11821 6.31466 6.51101 7.12192 7.19361 7.46217 8.06624 8.68329 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.005584 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.153182 B = 5013.054800 C = 5385.671335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.153 4.153 3 C 0.235 3.765 4 N -0.455 5.455 5 C -0.351 4.351 6 H 0.071 0.929 7 C 0.003 3.997 8 N -0.874 5.874 9 Si 0.982 3.018 10 H -0.282 1.282 11 H -0.272 1.272 12 H -0.267 1.267 13 C 0.453 3.547 14 O -0.613 6.613 15 C 0.066 3.934 16 H 0.066 0.934 17 C -0.111 4.111 18 C -0.105 4.105 19 C 0.092 3.908 20 H 0.065 0.935 21 C -0.139 4.139 22 C -0.179 4.179 23 C -0.174 4.174 24 N -0.647 5.647 25 H 0.233 0.767 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.271 0.729 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -9.325 11.478 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.155 4.155 3 C 0.112 3.888 4 N -0.175 5.175 5 C -0.479 4.479 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.511 5.511 9 Si 0.806 3.194 10 H -0.208 1.208 11 H -0.197 1.197 12 H -0.192 1.192 13 C 0.242 3.758 14 O -0.498 6.498 15 C -0.047 4.047 16 H 0.084 0.916 17 C -0.150 4.150 18 C -0.143 4.143 19 C -0.017 4.017 20 H 0.083 0.917 21 C -0.157 4.157 22 C -0.217 4.217 23 C -0.211 4.211 24 N -0.276 5.276 25 H 0.249 0.751 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.139 -9.522 10.705 14.328 hybrid contribution -0.853 1.178 -0.753 1.638 sum -0.714 -8.344 9.952 13.007 Atomic orbital electron populations 1.25137 0.96348 1.03168 1.01939 1.23520 0.95068 0.98205 0.98707 1.18331 0.84505 0.99275 0.86646 1.43859 1.56647 1.04433 1.12512 1.19489 1.31233 0.95416 1.01731 0.91123 1.25922 0.95398 0.99052 0.99617 1.70160 1.19902 1.18517 1.42546 0.85177 0.78854 0.77234 0.78117 1.20757 1.19666 1.19168 1.20780 0.82878 0.82177 0.89935 1.90475 1.51673 1.71116 1.36504 1.22210 0.99440 0.90061 0.93009 0.91601 1.22278 0.96463 0.99513 0.96722 1.22302 0.98645 0.93030 1.00305 1.22103 0.98109 0.92399 0.89099 0.91717 1.22298 1.03583 0.93453 0.96406 1.22861 1.00279 1.02874 0.95666 1.22991 0.93469 1.00250 1.04352 1.63303 1.34692 1.03837 1.25762 0.75089 0.88731 0.89032 0.91876 0.92918 0.88674 0.90771 0.88056 0.85692 0.89939 0.88842 0.87314 0.89783 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.76 19.25 74.32 1.43 -8.33 16 2 C -0.15 -6.73 10.53 31.13 0.33 -6.40 16 3 C 0.23 10.36 4.81 84.58 0.41 10.76 16 4 N -0.46 -23.63 2.60 -645.40 -1.68 -25.31 16 5 C -0.35 -20.19 9.32 84.04 0.78 -19.40 16 6 H 0.07 4.41 7.39 -2.91 -0.02 4.39 16 7 C 0.00 0.17 4.88 84.93 0.41 0.59 16 8 N -0.87 -45.92 9.45 21.66 0.20 -45.72 16 9 Si 0.98 42.72 29.60 68.60 2.03 44.75 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 C 0.45 22.90 6.74 87.66 0.59 23.49 16 14 O -0.61 -36.53 16.23 -3.06 -0.05 -36.58 16 15 C 0.07 2.47 2.61 44.32 0.12 2.59 16 16 H 0.07 2.38 6.57 -2.39 -0.02 2.36 16 17 C -0.11 -3.35 5.96 31.49 0.19 -3.16 16 18 C -0.11 -2.44 6.54 31.49 0.21 -2.23 16 19 C 0.09 2.31 3.51 45.04 0.16 2.46 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.14 -3.10 5.59 -10.79 -0.06 -3.16 16 22 C -0.18 -4.70 9.87 30.62 0.30 -4.39 16 23 C -0.17 -3.65 10.24 30.62 0.31 -3.33 16 24 N -0.65 -22.20 4.86 -460.78 -2.24 -24.44 16 25 H 0.23 7.07 7.80 -4.43 -0.03 7.03 16 26 H 0.10 3.39 5.51 -2.38 -0.01 3.38 16 27 H 0.09 4.31 6.45 -2.39 -0.02 4.29 16 28 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.05 1.83 7.85 -2.39 -0.02 1.82 16 30 H 0.09 2.36 7.09 -2.39 -0.02 2.35 16 31 H 0.07 1.73 7.86 -2.38 -0.02 1.71 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.13 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.08 2.80 6.96 -2.38 -0.02 2.78 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.33 11.34 8.93 -89.69 -0.80 10.54 16 Total: -1.00 -69.88 313.49 3.71 -66.17 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.26 Total: 31.66 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 5.18 Total: -10.52 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -3.71 Total: -95.47 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.05 Total: -36.58 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.88 3.71 -66.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407387762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.295 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds