Wall clock time and date at job start Mon Mar 30 2020 04:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47347 * 31.38209 * 3 2 1 5 5 C 1.37094 * 120.00580 * 86.19597 * 4 3 2 6 6 H 1.07996 * 120.00536 * 210.76937 * 5 4 3 7 7 C 1.38951 * 119.99657 * 30.77209 * 5 4 3 8 8 N 1.31405 * 120.00590 * 41.35233 * 7 5 4 9 9 Si 1.86801 * 119.99635 * 221.35445 * 7 5 4 10 10 H 1.48503 * 109.47397 * 265.00826 * 9 7 5 11 11 H 1.48506 * 109.47090 * 145.01162 * 9 7 5 12 12 H 1.48502 * 109.47381 * 25.01164 * 9 7 5 13 13 C 1.34780 * 119.99236 * 266.20038 * 4 3 2 14 14 O 1.21294 * 120.00410 * 359.97438 * 13 4 3 15 15 C 1.50707 * 119.99497 * 179.97438 * 13 4 3 16 16 H 1.08999 * 110.32995 * 320.79598 * 15 13 4 17 17 C 1.54904 * 110.37381 * 83.17551 * 15 13 4 18 18 C 1.55141 * 101.65276 * 155.89853 * 17 15 13 19 19 C 1.54315 * 103.01778 * 324.34412 * 18 17 15 20 20 H 1.09002 * 109.88860 * 262.88296 * 19 18 17 21 21 C 1.52997 * 109.88762 * 141.69292 * 19 18 17 22 22 C 1.52999 * 117.49857 * 134.34547 * 21 19 18 23 23 C 1.52999 * 117.50217 * 65.72177 * 21 19 18 24 24 N 1.47440 * 107.23441 * 22.28348 * 19 18 17 25 25 H 4.40648 * 5.51390 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.47413 * 271.37233 * 3 2 1 27 27 H 1.09008 * 109.46751 * 151.37520 * 3 2 1 28 28 H 0.97000 * 119.99635 * 0.02562 * 8 7 5 29 29 H 1.09007 * 110.98687 * 273.99088 * 17 15 13 30 30 H 1.09000 * 110.99371 * 37.80046 * 17 15 13 31 31 H 1.09000 * 110.70118 * 205.96066 * 18 17 15 32 32 H 1.09001 * 110.85230 * 82.79665 * 18 17 15 33 33 H 1.09005 * 115.55187 * 280.04896 * 21 19 18 34 34 H 1.08993 * 117.50107 * 0.02562 * 22 21 19 35 35 H 1.08999 * 117.49822 * 145.01861 * 22 21 19 36 36 H 1.08997 * 117.50163 * 214.97641 * 23 21 19 37 37 H 1.08999 * 117.49805 * 359.97438 * 23 21 19 38 38 H 1.00903 * 110.99574 * 123.25925 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1783 -0.7193 5 6 3.2892 -1.1356 -2.0808 6 1 3.1574 -2.0326 -2.6677 7 6 3.6152 0.0618 -2.7058 8 7 4.5048 0.8640 -2.1658 9 14 2.7885 0.5313 -4.3138 10 1 3.6462 0.1135 -5.4518 11 1 2.5903 2.0024 -4.3575 12 1 1.4719 -0.1486 -4.4106 13 6 3.4329 -2.3050 -0.0422 14 8 3.2968 -2.3427 1.1624 15 6 3.9353 -3.5180 -0.7822 16 1 3.4040 -3.6322 -1.7270 17 6 5.4606 -3.4061 -1.0283 18 6 5.8633 -4.8964 -1.1821 19 6 4.9337 -5.6129 -0.1802 20 1 5.4610 -5.7831 0.7585 21 6 4.4651 -6.9461 -0.7667 22 6 4.5138 -8.1745 0.1440 23 6 5.5228 -8.0274 -0.9967 24 7 3.7749 -4.7305 0.0484 25 1 -1.0499 -0.0002 -0.0003 26 1 3.0093 -0.0238 1.0273 27 1 3.0088 0.9030 -0.4924 28 1 4.9343 0.6201 -1.3309 29 1 5.6688 -2.8490 -1.9418 30 1 5.9619 -2.9524 -0.1733 31 1 6.9087 -5.0431 -0.9107 32 1 5.6776 -5.2457 -2.1978 33 1 3.6462 -6.8826 -1.4833 34 1 4.8792 -8.0329 1.1611 35 1 3.7267 -8.9194 0.0268 36 1 5.3995 -8.6756 -1.8643 37 1 6.5525 -7.7889 -0.7306 38 1 2.9109 -5.2050 -0.1675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407387766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:44 Heat of formation + Delta-G solvation = 55.600092 kcal Electronic energy + Delta-G solvation = -19906.221921 eV Core-core repulsion = 16944.270861 eV Total energy + Delta-G solvation = -2961.951060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.47742 -38.13079 -35.88308 -34.95276 -32.53347 -31.25727 -29.82648 -28.98966 -26.50860 -24.35858 -22.52689 -22.44185 -21.12230 -20.02779 -19.21374 -17.98980 -17.00904 -16.41234 -16.12515 -15.08757 -14.89073 -14.39336 -14.07380 -13.86066 -13.68492 -12.88239 -12.69676 -12.40505 -12.25867 -12.03424 -11.73478 -11.61089 -11.39827 -11.15575 -11.03815 -10.82758 -10.42459 -10.39091 -10.30158 -10.23416 -9.91053 -9.82889 -9.34067 -8.97347 -8.50765 -7.90449 -7.80453 -6.86847 -3.98913 3.19606 3.31582 3.36728 3.48884 3.62121 3.69953 3.85554 4.18274 4.41054 4.62972 4.78199 4.84446 4.95012 5.10033 5.17512 5.24919 5.33914 5.41788 5.52918 5.56519 5.81634 5.84604 5.93885 6.02182 6.05719 6.12430 6.19068 6.38902 6.48928 6.54825 6.58655 6.65562 6.68151 7.30716 7.54029 7.77288 7.96895 8.29382 8.37560 8.96258 9.46508 9.83188 10.40521 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.005925 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.838533 B = 4724.407621 C = 5360.860253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.154 4.154 3 C 0.203 3.797 4 N -0.445 5.445 5 C -0.452 4.452 6 H 0.083 0.917 7 C 0.029 3.971 8 N -0.841 5.841 9 Si 1.056 2.944 10 H -0.284 1.284 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.481 3.519 14 O -0.582 6.582 15 C 0.083 3.917 16 H 0.067 0.933 17 C -0.103 4.103 18 C -0.134 4.134 19 C 0.112 3.888 20 H 0.080 0.920 21 C -0.168 4.168 22 C -0.176 4.176 23 C -0.175 4.175 24 N -0.656 5.656 25 H 0.210 0.790 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.280 0.720 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -10.389 -1.106 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.155 4.155 3 C 0.080 3.920 4 N -0.165 5.165 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.184 4.184 8 N -0.471 5.471 9 Si 0.882 3.118 10 H -0.211 1.211 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.269 3.731 14 O -0.465 6.465 15 C -0.029 4.029 16 H 0.085 0.915 17 C -0.142 4.142 18 C -0.173 4.173 19 C 0.002 3.998 20 H 0.098 0.902 21 C -0.187 4.187 22 C -0.213 4.213 23 C -0.213 4.213 24 N -0.285 5.285 25 H 0.226 0.774 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.040 -8.907 -1.051 9.029 hybrid contribution -0.508 -1.556 0.031 1.637 sum 0.532 -10.463 -1.020 10.526 Atomic orbital electron populations 1.24598 0.95612 1.02532 1.03668 1.23975 0.95144 0.98569 0.97805 1.18382 0.83142 0.92280 0.98175 1.43488 1.55738 1.10048 1.07248 1.19968 1.57221 0.99790 0.80825 0.89894 1.26167 0.93561 0.93728 1.04910 1.70788 1.15133 1.42756 1.18440 0.83743 0.76698 0.76846 0.74533 1.21067 1.20453 1.20796 1.20181 0.80632 0.85206 0.87040 1.90531 1.57320 1.84147 1.14482 1.21992 0.97164 0.89717 0.94053 0.91479 1.22442 0.93417 0.95430 1.02896 1.22836 0.99379 0.95785 0.99298 1.21863 0.91953 0.88782 0.97165 0.90209 1.22953 1.01695 0.91206 1.02852 1.22974 1.02124 1.00191 0.96021 1.22868 0.95837 1.02192 1.00424 1.61553 1.03801 1.05506 1.57660 0.77351 0.89410 0.87928 0.90854 0.89565 0.91120 0.91221 0.91285 0.88045 0.88623 0.89114 0.89067 0.88734 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.92 19.25 29.55 0.57 -4.35 16 2 C -0.15 -3.54 13.65 -37.12 -0.51 -4.04 16 3 C 0.20 4.88 5.37 -6.83 -0.04 4.85 16 4 N -0.44 -11.09 2.38 -117.93 -0.28 -11.37 16 5 C -0.45 -11.30 8.45 -14.93 -0.13 -11.43 16 6 H 0.08 2.05 6.49 -52.49 -0.34 1.71 16 7 C 0.03 0.72 4.47 -17.47 -0.08 0.64 16 8 N -0.84 -21.85 12.42 55.50 0.69 -21.16 16 9 Si 1.06 22.37 30.06 -169.99 -5.11 17.26 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.48 11.84 6.92 -10.98 -0.08 11.76 16 14 O -0.58 -15.86 16.11 5.55 0.09 -15.77 16 15 C 0.08 1.69 2.89 -67.34 -0.19 1.50 16 16 H 0.07 1.38 6.58 -51.93 -0.34 1.03 16 17 C -0.10 -1.90 6.38 -24.59 -0.16 -2.06 16 18 C -0.13 -1.96 6.29 -24.91 -0.16 -2.11 16 19 C 0.11 1.66 3.67 -66.73 -0.24 1.42 16 20 H 0.08 1.22 7.97 -51.93 -0.41 0.81 16 21 C -0.17 -2.03 4.82 -90.62 -0.44 -2.47 16 22 C -0.18 -1.87 10.18 -26.73 -0.27 -2.14 16 23 C -0.18 -1.78 10.05 -26.73 -0.27 -2.05 16 24 N -0.66 -12.00 6.62 -98.13 -0.65 -12.65 16 25 H 0.21 3.17 7.80 -54.10 -0.42 2.75 16 26 H 0.09 2.09 7.31 -51.93 -0.38 1.71 16 27 H 0.10 2.51 5.76 -51.92 -0.30 2.21 16 28 H 0.28 7.41 7.93 -40.82 -0.32 7.08 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 33 H 0.10 1.23 8.05 -51.93 -0.42 0.82 16 34 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.34 5.72 8.16 -39.29 -0.32 5.40 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -29.28 322.06 -7.81 -37.09 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.41 Total: 12.25 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.99 Total: -10.49 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.24 Total: -45.19 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.11 Total: 17.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.28 -7.81 -37.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407387766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.686 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds