Wall clock time and date at job start Mon Mar 30 2020 04:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47347 * 31.38209 * 3 2 1 5 5 C 1.37094 * 120.00580 * 86.19597 * 4 3 2 6 6 H 1.07996 * 120.00536 * 210.76937 * 5 4 3 7 7 C 1.38951 * 119.99657 * 30.77209 * 5 4 3 8 8 N 1.31405 * 120.00590 * 41.35233 * 7 5 4 9 9 Si 1.86801 * 119.99635 * 221.35445 * 7 5 4 10 10 H 1.48503 * 109.47397 * 265.00826 * 9 7 5 11 11 H 1.48506 * 109.47090 * 145.01162 * 9 7 5 12 12 H 1.48502 * 109.47381 * 25.01164 * 9 7 5 13 13 C 1.34780 * 119.99236 * 266.20038 * 4 3 2 14 14 O 1.21294 * 120.00410 * 359.97438 * 13 4 3 15 15 C 1.50707 * 119.99497 * 179.97438 * 13 4 3 16 16 H 1.08999 * 110.32995 * 320.79598 * 15 13 4 17 17 C 1.54904 * 110.37381 * 83.17551 * 15 13 4 18 18 C 1.55141 * 101.65276 * 155.89853 * 17 15 13 19 19 C 1.54315 * 103.01778 * 324.34412 * 18 17 15 20 20 H 1.09002 * 109.88860 * 262.88296 * 19 18 17 21 21 C 1.52997 * 109.88762 * 141.69292 * 19 18 17 22 22 C 1.52999 * 117.49857 * 134.34547 * 21 19 18 23 23 C 1.52999 * 117.50217 * 65.72177 * 21 19 18 24 24 N 1.47440 * 107.23441 * 22.28348 * 19 18 17 25 25 H 4.40648 * 5.51390 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.47413 * 271.37233 * 3 2 1 27 27 H 1.09008 * 109.46751 * 151.37520 * 3 2 1 28 28 H 0.97000 * 119.99635 * 0.02562 * 8 7 5 29 29 H 1.09007 * 110.98687 * 273.99088 * 17 15 13 30 30 H 1.09000 * 110.99371 * 37.80046 * 17 15 13 31 31 H 1.09000 * 110.70118 * 205.96066 * 18 17 15 32 32 H 1.09001 * 110.85230 * 82.79665 * 18 17 15 33 33 H 1.09005 * 115.55187 * 280.04896 * 21 19 18 34 34 H 1.08993 * 117.50107 * 0.02562 * 22 21 19 35 35 H 1.08999 * 117.49822 * 145.01861 * 22 21 19 36 36 H 1.08997 * 117.50163 * 214.97641 * 23 21 19 37 37 H 1.08999 * 117.49805 * 359.97438 * 23 21 19 38 38 H 1.00903 * 110.99574 * 123.25925 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1783 -0.7193 5 6 3.2892 -1.1356 -2.0808 6 1 3.1574 -2.0326 -2.6677 7 6 3.6152 0.0618 -2.7058 8 7 4.5048 0.8640 -2.1658 9 14 2.7885 0.5313 -4.3138 10 1 3.6462 0.1135 -5.4518 11 1 2.5903 2.0024 -4.3575 12 1 1.4719 -0.1486 -4.4106 13 6 3.4329 -2.3050 -0.0422 14 8 3.2968 -2.3427 1.1624 15 6 3.9353 -3.5180 -0.7822 16 1 3.4040 -3.6322 -1.7270 17 6 5.4606 -3.4061 -1.0283 18 6 5.8633 -4.8964 -1.1821 19 6 4.9337 -5.6129 -0.1802 20 1 5.4610 -5.7831 0.7585 21 6 4.4651 -6.9461 -0.7667 22 6 4.5138 -8.1745 0.1440 23 6 5.5228 -8.0274 -0.9967 24 7 3.7749 -4.7305 0.0484 25 1 -1.0499 -0.0002 -0.0003 26 1 3.0093 -0.0238 1.0273 27 1 3.0088 0.9030 -0.4924 28 1 4.9343 0.6201 -1.3309 29 1 5.6688 -2.8490 -1.9418 30 1 5.9619 -2.9524 -0.1733 31 1 6.9087 -5.0431 -0.9107 32 1 5.6776 -5.2457 -2.1978 33 1 3.6462 -6.8826 -1.4833 34 1 4.8792 -8.0329 1.1611 35 1 3.7267 -8.9194 0.0268 36 1 5.3995 -8.6756 -1.8643 37 1 6.5525 -7.7889 -0.7306 38 1 2.9109 -5.2050 -0.1675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407387766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:44 Heat of formation + Delta-G solvation = 38.013631 kcal Electronic energy + Delta-G solvation = -19906.984527 eV Core-core repulsion = 16944.270861 eV Total energy + Delta-G solvation = -2962.713666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08908 -39.59219 -37.26691 -36.69245 -34.31716 -33.15478 -31.22506 -30.47464 -28.24937 -26.27161 -23.80958 -23.37724 -22.45170 -21.24279 -21.01762 -19.69236 -18.76849 -18.10280 -17.46508 -16.70021 -16.24640 -16.14239 -15.57610 -15.45725 -14.96791 -14.59138 -14.28219 -14.18794 -13.74089 -13.58353 -13.38708 -12.83410 -12.76097 -12.46919 -12.37929 -12.24600 -12.10214 -11.95146 -11.69425 -11.58038 -11.27939 -11.10487 -10.90752 -10.82664 -10.37167 -9.87737 -9.31897 -8.84739 -5.98694 1.48537 1.58920 1.64763 1.83575 1.90578 1.98612 2.42096 2.68183 2.89752 2.99190 3.52273 3.63302 3.65357 3.74569 3.85417 4.08608 4.14282 4.19374 4.27526 4.35441 4.42835 4.57569 4.63693 4.68366 4.81293 4.86605 4.96347 5.04644 5.06893 5.07740 5.17894 5.29016 5.39834 5.57470 5.85806 5.99795 6.29738 6.42502 6.68426 7.01847 7.52644 7.89266 8.39333 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.005925 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.838533 B = 4724.407621 C = 5360.860253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.227 4.227 3 C 0.207 3.793 4 N -0.451 5.451 5 C -0.459 4.459 6 H 0.085 0.915 7 C -0.004 4.004 8 N -0.858 5.858 9 Si 1.103 2.897 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.465 3.535 14 O -0.618 6.618 15 C 0.090 3.910 16 H 0.066 0.934 17 C -0.101 4.101 18 C -0.120 4.120 19 C 0.114 3.886 20 H 0.074 0.926 21 C -0.181 4.181 22 C -0.174 4.174 23 C -0.159 4.159 24 N -0.672 5.672 25 H 0.260 0.740 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.266 0.734 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -12.026 -2.661 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.228 4.228 3 C 0.084 3.916 4 N -0.171 5.171 5 C -0.584 4.584 6 H 0.103 0.897 7 C -0.212 4.212 8 N -0.489 5.489 9 Si 0.924 3.076 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.200 1.200 13 C 0.256 3.744 14 O -0.504 6.504 15 C -0.022 4.022 16 H 0.084 0.916 17 C -0.140 4.140 18 C -0.159 4.159 19 C 0.005 3.995 20 H 0.092 0.908 21 C -0.200 4.200 22 C -0.211 4.211 23 C -0.196 4.196 24 N -0.302 5.302 25 H 0.276 0.724 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.169 -10.561 -2.612 10.880 hybrid contribution -0.292 -1.027 0.611 1.230 sum -0.123 -11.587 -2.001 11.759 Atomic orbital electron populations 1.25687 0.96444 0.98899 0.99977 1.24028 0.95648 1.01933 1.01215 1.18155 0.84773 0.91603 0.97106 1.43700 1.55521 1.10358 1.07471 1.20109 1.57318 1.00152 0.80862 0.89739 1.27410 0.92997 0.93435 1.07359 1.70892 1.16416 1.43285 1.18286 0.83111 0.76281 0.76407 0.71767 1.19160 1.20678 1.19970 1.21026 0.80046 0.86368 0.86998 1.90483 1.58920 1.84994 1.16041 1.21838 0.97991 0.88968 0.93423 0.91631 1.22368 0.92065 0.98240 1.01344 1.22805 1.00505 0.92331 1.00213 1.21848 0.90672 0.89721 0.97236 0.90804 1.22757 1.03082 0.90236 1.03946 1.23047 1.02752 0.99312 0.95988 1.22969 0.95586 1.00500 1.00586 1.61448 1.05410 1.05711 1.57678 0.72396 0.90829 0.89192 0.92378 0.90557 0.93301 0.89132 0.89710 0.87963 0.88962 0.87865 0.87435 0.88146 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.25 19.25 74.32 1.43 -5.82 16 2 C -0.23 -10.51 13.65 31.12 0.42 -10.08 16 3 C 0.21 10.40 5.37 84.57 0.45 10.86 16 4 N -0.45 -23.29 2.38 -645.40 -1.54 -24.83 16 5 C -0.46 -23.29 8.45 84.04 0.71 -22.58 16 6 H 0.08 4.21 6.49 -2.91 -0.02 4.19 16 7 C 0.00 -0.19 4.47 84.93 0.38 0.19 16 8 N -0.86 -45.66 12.42 21.66 0.27 -45.40 16 9 Si 1.10 44.41 30.06 68.60 2.06 46.47 16 10 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 13 C 0.47 23.81 6.92 87.66 0.61 24.42 16 14 O -0.62 -35.21 16.11 -3.07 -0.05 -35.26 16 15 C 0.09 3.76 2.89 44.64 0.13 3.89 16 16 H 0.07 2.72 6.58 -2.39 -0.02 2.70 16 17 C -0.10 -3.80 6.38 31.98 0.20 -3.59 16 18 C -0.12 -3.32 6.29 31.77 0.20 -3.12 16 19 C 0.11 3.27 3.67 45.26 0.17 3.43 16 20 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 21 C -0.18 -4.00 4.82 -10.80 -0.05 -4.05 16 22 C -0.17 -3.27 10.18 30.59 0.31 -2.96 16 23 C -0.16 -2.72 10.05 30.59 0.31 -2.41 16 24 N -0.67 -24.70 6.62 -464.39 -3.07 -27.77 16 25 H 0.26 6.59 7.80 -4.42 -0.03 6.55 16 26 H 0.07 3.77 7.31 -2.39 -0.02 3.76 16 27 H 0.09 4.65 5.76 -2.38 -0.01 4.64 16 28 H 0.27 14.73 7.93 -92.71 -0.74 13.99 16 29 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.05 2.01 8.05 -2.39 -0.02 1.99 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.11 7.85 -2.39 -0.02 2.09 16 33 H 0.10 2.27 8.05 -2.38 -0.02 2.25 16 34 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.34 11.59 8.16 -89.69 -0.73 10.85 16 Total: -1.00 -64.97 322.06 3.30 -61.67 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.36 Total: 36.96 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.27 Total: -11.85 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -4.34 Total: -98.00 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.05 Total: -35.26 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.06 Total: 46.47 kcal Total: -64.97 3.30 -61.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407387766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.681 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds