Wall clock time and date at job start Mon Mar 30 2020 04:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47587 * 2 1 4 4 C 1.50697 * 109.47329 * 120.00383 * 2 1 3 5 5 H 1.08002 * 119.99947 * 119.99415 * 4 2 1 6 6 C 1.37874 * 120.00222 * 300.00113 * 4 2 1 7 7 N 1.31519 * 119.99728 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47343 * 59.99101 * 8 6 4 10 10 H 1.48497 * 109.47367 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46720 * 299.99334 * 8 6 4 12 12 C 1.50704 * 109.46869 * 240.00300 * 2 1 3 13 13 O 1.21279 * 119.99732 * 274.69284 * 12 2 1 14 14 N 1.34776 * 120.00098 * 94.68493 * 12 2 1 15 15 C 1.47055 * 120.97909 * 354.58687 * 14 12 2 16 16 C 1.53222 * 109.29725 * 115.88642 * 15 14 12 17 17 N 1.46707 * 109.23168 * 46.32125 * 16 15 14 18 18 C 1.36094 * 126.92841 * 161.29016 * 17 16 15 19 19 C 1.34970 * 108.26418 * 179.51509 * 18 17 16 20 20 C 1.41055 * 107.46616 * 0.12365 * 19 18 17 21 21 C 1.34211 * 107.28470 * 0.32191 * 20 19 18 22 22 C 1.47479 * 120.98250 * 174.55056 * 14 12 2 23 23 H 1.08999 * 109.95188 * 342.68168 * 22 14 12 24 24 C 1.52997 * 109.94668 * 103.86152 * 22 14 12 25 25 H 1.09001 * 109.46847 * 305.06855 * 1 2 3 26 26 H 1.09002 * 109.47902 * 65.06687 * 1 2 3 27 27 H 1.09002 * 109.47378 * 185.07124 * 1 2 3 28 28 H 0.97000 * 119.99852 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.50417 * 355.93441 * 15 14 12 30 30 H 1.09009 * 109.49698 * 235.83078 * 15 14 12 31 31 H 1.08997 * 109.50991 * 286.39085 * 16 15 14 32 32 H 1.09006 * 109.54928 * 166.27324 * 16 15 14 33 33 H 1.08001 * 125.86720 * 359.51426 * 18 17 16 34 34 H 1.07995 * 126.26100 * 180.10050 * 19 18 17 35 35 H 1.08002 * 126.35552 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.47346 * 60.00574 * 24 22 14 37 37 H 1.09005 * 109.46804 * 180.02562 * 24 22 14 38 38 H 1.09002 * 109.47593 * 299.99959 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.8076 -1.1194 4.0075 10 1 1.8280 -0.4196 5.2204 11 1 1.8280 -2.5200 4.0080 12 6 2.0322 -0.7104 -1.2305 13 8 2.1533 -1.9171 -1.2271 14 7 2.3467 -0.0047 -2.3349 15 6 2.0976 1.4429 -2.4045 16 6 3.4343 2.1812 -2.5308 17 7 4.2579 1.5190 -3.5484 18 6 5.3299 2.0446 -4.2017 19 6 5.8109 1.1085 -5.0466 20 6 5.0022 -0.0393 -4.9116 21 6 4.0593 0.2423 -3.9990 22 6 2.9515 -0.6613 -3.5088 23 1 3.3568 -1.6323 -3.2241 24 6 1.9015 -0.8359 -4.6078 25 1 -0.3633 0.5905 0.8411 26 1 -0.3635 0.4332 -0.9319 27 1 -0.3634 -1.0236 0.0908 28 1 0.7095 1.1615 3.4845 29 1 1.5864 1.7682 -1.4985 30 1 1.4765 1.6639 -3.2727 31 1 3.9533 2.1609 -1.5726 32 1 3.2535 3.2152 -2.8250 33 1 5.7273 3.0398 -4.0671 34 1 6.6594 1.2184 -5.7057 35 1 5.1173 -0.9702 -5.4471 36 1 1.5169 0.1408 -4.9014 37 1 2.3565 -1.3220 -5.4709 38 1 1.0832 -1.4514 -4.2341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596732355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:15 Heat of formation + Delta-G solvation = 18.489133 kcal Electronic energy + Delta-G solvation = -20382.591699 eV Core-core repulsion = 17419.031387 eV Total energy + Delta-G solvation = -2963.560312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41481 -38.98876 -35.77809 -34.09471 -33.33954 -31.26941 -29.90137 -28.28579 -27.71644 -25.26152 -23.76751 -23.43852 -21.77404 -20.42666 -19.01768 -17.66649 -17.19761 -16.71569 -15.84564 -15.58722 -14.96379 -14.44203 -14.28011 -13.83213 -13.44662 -13.22177 -12.96021 -12.69552 -12.50183 -12.17249 -12.02440 -11.83006 -11.70868 -11.47695 -11.31849 -11.02960 -11.02101 -10.76862 -10.73069 -10.33182 -10.10959 -9.09084 -8.67050 -8.48550 -8.37955 -8.29376 -7.85278 -6.11849 -4.15233 2.40942 2.92519 3.17035 3.31236 3.34013 3.38445 3.54424 3.58978 4.40058 4.69293 4.72346 5.06267 5.09922 5.22024 5.22114 5.41035 5.43567 5.62628 5.71567 5.74139 5.78075 5.84116 5.88144 6.13450 6.29664 6.40937 6.44611 6.57745 6.74895 6.85227 6.90666 7.19943 7.34589 7.39252 7.51586 7.67976 7.86793 7.98642 8.26427 8.88409 9.08093 9.49699 10.95712 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.005757 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.421808 B = 4862.084588 C = 5060.789861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.033 3.967 3 H 0.045 0.955 4 C -0.502 4.502 5 H 0.066 0.934 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.529 3.471 13 O -0.540 6.540 14 N -0.629 5.629 15 C 0.098 3.902 16 C 0.087 3.913 17 N -0.440 5.440 18 C -0.015 4.015 19 C -0.205 4.205 20 C -0.195 4.195 21 C 0.018 3.982 22 C 0.205 3.795 23 H 0.109 0.891 24 C -0.149 4.149 25 H 0.092 0.908 26 H 0.010 0.990 27 H 0.038 0.962 28 H 0.263 0.737 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 5.339 -13.051 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.012 3.988 3 H 0.063 0.937 4 C -0.540 4.540 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.321 3.679 13 O -0.415 6.415 14 N -0.365 5.365 15 C -0.026 4.026 16 C -0.036 4.036 17 N -0.116 5.116 18 C -0.145 4.145 19 C -0.230 4.230 20 C -0.219 4.219 21 C -0.094 4.094 22 C 0.101 3.899 23 H 0.127 0.873 24 C -0.207 4.207 25 H 0.110 0.890 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.176 0.824 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.145 4.967 -12.583 13.888 hybrid contribution 0.467 -0.177 0.773 0.921 sum 3.613 4.790 -11.809 13.246 Atomic orbital electron populations 1.21703 0.95967 1.01190 0.99813 1.18917 0.94406 0.96395 0.89052 0.93701 1.20955 1.31533 1.12498 0.89050 0.91602 1.24911 0.94943 0.95007 0.99042 1.69856 1.36770 1.22895 1.23814 0.86502 0.79214 0.79899 0.81556 1.20222 1.21224 1.20033 1.22091 0.74583 0.87866 0.83375 1.90542 1.52944 1.15050 1.83002 1.48631 1.64630 1.07830 1.15378 1.21935 0.94698 0.81209 1.04803 1.22414 0.92702 0.96905 0.91570 1.44110 1.24323 1.11805 1.31338 1.21692 0.92870 1.00180 0.99790 1.20830 1.03296 0.94349 1.04541 1.20383 0.98209 0.99890 1.03458 1.20605 1.01060 0.86605 1.01172 1.19760 0.89402 0.95245 0.85508 0.87329 1.22038 0.98881 1.01900 0.97890 0.88976 0.97073 0.94316 0.92768 0.86283 0.90972 0.89350 0.88824 0.82450 0.84967 0.84878 0.92725 0.91435 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.82 37.16 0.33 -2.63 16 2 C 0.03 0.81 1.85 -92.93 -0.17 0.63 16 3 H 0.05 1.07 6.16 -51.93 -0.32 0.75 16 4 C -0.50 -13.97 8.32 -34.44 -0.29 -14.25 16 5 H 0.07 1.94 7.25 -52.49 -0.38 1.56 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.32 11.38 55.43 0.63 -23.69 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.53 12.08 6.69 -10.98 -0.07 12.01 16 13 O -0.54 -14.10 15.69 5.56 0.09 -14.01 16 14 N -0.63 -11.45 2.63 -165.86 -0.44 -11.89 16 15 C 0.10 1.42 6.04 -3.62 -0.02 1.40 16 16 C 0.09 1.13 7.12 -3.81 -0.03 1.10 16 17 N -0.44 -6.40 3.15 -112.17 -0.35 -6.76 16 18 C -0.02 -0.20 11.49 -16.82 -0.19 -0.39 16 19 C -0.21 -2.73 10.87 -39.67 -0.43 -3.16 16 20 C -0.19 -2.82 10.81 -39.93 -0.43 -3.26 16 21 C 0.02 0.28 5.95 -81.57 -0.49 -0.20 16 22 C 0.21 3.39 3.19 -68.34 -0.22 3.18 16 23 H 0.11 2.00 7.29 -51.93 -0.38 1.62 16 24 C -0.15 -2.04 9.42 37.16 0.35 -1.69 16 25 H 0.09 2.27 6.22 -51.93 -0.32 1.95 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.12 1.79 5.54 -51.93 -0.29 1.51 16 30 H 0.07 0.91 7.51 -51.92 -0.39 0.52 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.05 0.71 7.52 -51.93 -0.39 0.32 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -31.28 308.41 -7.61 -38.89 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.41 Total: 2.04 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.76 Total: -5.68 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.16 Total: -42.33 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.28 -7.61 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596732355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.379 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds