Wall clock time and date at job start Mon Mar 30 2020 04:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47587 * 2 1 4 4 C 1.50697 * 109.47329 * 120.00383 * 2 1 3 5 5 H 1.08002 * 119.99947 * 119.99415 * 4 2 1 6 6 C 1.37874 * 120.00222 * 300.00113 * 4 2 1 7 7 N 1.31519 * 119.99728 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47343 * 59.99101 * 8 6 4 10 10 H 1.48497 * 109.47367 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46720 * 299.99334 * 8 6 4 12 12 C 1.50704 * 109.46869 * 240.00300 * 2 1 3 13 13 O 1.21279 * 119.99732 * 274.69284 * 12 2 1 14 14 N 1.34776 * 120.00098 * 94.68493 * 12 2 1 15 15 C 1.47055 * 120.97909 * 354.58687 * 14 12 2 16 16 C 1.53222 * 109.29725 * 115.88642 * 15 14 12 17 17 N 1.46707 * 109.23168 * 46.32125 * 16 15 14 18 18 C 1.36094 * 126.92841 * 161.29016 * 17 16 15 19 19 C 1.34970 * 108.26418 * 179.51509 * 18 17 16 20 20 C 1.41055 * 107.46616 * 0.12365 * 19 18 17 21 21 C 1.34211 * 107.28470 * 0.32191 * 20 19 18 22 22 C 1.47479 * 120.98250 * 174.55056 * 14 12 2 23 23 H 1.08999 * 109.95188 * 342.68168 * 22 14 12 24 24 C 1.52997 * 109.94668 * 103.86152 * 22 14 12 25 25 H 1.09001 * 109.46847 * 305.06855 * 1 2 3 26 26 H 1.09002 * 109.47902 * 65.06687 * 1 2 3 27 27 H 1.09002 * 109.47378 * 185.07124 * 1 2 3 28 28 H 0.97000 * 119.99852 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.50417 * 355.93441 * 15 14 12 30 30 H 1.09009 * 109.49698 * 235.83078 * 15 14 12 31 31 H 1.08997 * 109.50991 * 286.39085 * 16 15 14 32 32 H 1.09006 * 109.54928 * 166.27324 * 16 15 14 33 33 H 1.08001 * 125.86720 * 359.51426 * 18 17 16 34 34 H 1.07995 * 126.26100 * 180.10050 * 19 18 17 35 35 H 1.08002 * 126.35552 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.47346 * 60.00574 * 24 22 14 37 37 H 1.09005 * 109.46804 * 180.02562 * 24 22 14 38 38 H 1.09002 * 109.47593 * 299.99959 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.8076 -1.1194 4.0075 10 1 1.8280 -0.4196 5.2204 11 1 1.8280 -2.5200 4.0080 12 6 2.0322 -0.7104 -1.2305 13 8 2.1533 -1.9171 -1.2271 14 7 2.3467 -0.0047 -2.3349 15 6 2.0976 1.4429 -2.4045 16 6 3.4343 2.1812 -2.5308 17 7 4.2579 1.5190 -3.5484 18 6 5.3299 2.0446 -4.2017 19 6 5.8109 1.1085 -5.0466 20 6 5.0022 -0.0393 -4.9116 21 6 4.0593 0.2423 -3.9990 22 6 2.9515 -0.6613 -3.5088 23 1 3.3568 -1.6323 -3.2241 24 6 1.9015 -0.8359 -4.6078 25 1 -0.3633 0.5905 0.8411 26 1 -0.3635 0.4332 -0.9319 27 1 -0.3634 -1.0236 0.0908 28 1 0.7095 1.1615 3.4845 29 1 1.5864 1.7682 -1.4985 30 1 1.4765 1.6639 -3.2727 31 1 3.9533 2.1609 -1.5726 32 1 3.2535 3.2152 -2.8250 33 1 5.7273 3.0398 -4.0671 34 1 6.6594 1.2184 -5.7057 35 1 5.1173 -0.9702 -5.4471 36 1 1.5169 0.1408 -4.9014 37 1 2.3565 -1.3220 -5.4709 38 1 1.0832 -1.4514 -4.2341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596732355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:14 Heat of formation + Delta-G solvation = 0.556491 kcal Electronic energy + Delta-G solvation = -20383.369316 eV Core-core repulsion = 17419.031387 eV Total energy + Delta-G solvation = -2964.337929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.54314 -40.60744 -37.25369 -35.94847 -34.63672 -32.93899 -31.49855 -29.45164 -28.80470 -27.31095 -25.32955 -24.60991 -23.30306 -21.51510 -20.47520 -18.95099 -18.56199 -18.49000 -17.51073 -17.04438 -16.49639 -16.07021 -15.70878 -15.11060 -14.90046 -14.60212 -14.41013 -14.12297 -13.90588 -13.44674 -13.28655 -13.06887 -13.04262 -12.97076 -12.81226 -12.68232 -12.62647 -12.45844 -12.26200 -12.20348 -12.10597 -11.11030 -10.64439 -10.30536 -9.83751 -9.47109 -8.93175 -8.20020 -6.30071 1.32770 1.38884 1.40301 1.48048 1.72429 1.81013 2.12984 2.26531 2.42798 3.09934 3.53004 3.59717 3.90680 3.98257 4.19732 4.24083 4.28162 4.36765 4.51336 4.65879 4.69663 4.73009 4.75348 4.76275 4.88320 4.91160 4.99457 5.16042 5.32873 5.38007 5.41926 5.55186 5.67742 5.86288 6.09409 6.15553 6.27592 6.43125 6.56004 6.72848 7.30584 7.40438 8.85692 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.005757 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.421808 B = 4862.084588 C = 5060.789861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.032 3.968 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.036 0.964 6 C 0.028 3.972 7 N -0.904 5.904 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.280 1.280 12 C 0.527 3.473 13 O -0.587 6.587 14 N -0.622 5.622 15 C 0.091 3.909 16 C 0.089 3.911 17 N -0.448 5.448 18 C -0.010 4.010 19 C -0.217 4.217 20 C -0.200 4.200 21 C -0.011 4.011 22 C 0.203 3.797 23 H 0.078 0.922 24 C -0.138 4.138 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.017 0.983 28 H 0.267 0.733 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.191 0.809 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 7.331 -14.196 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.011 3.989 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.055 0.945 6 C -0.172 4.172 7 N -0.542 5.542 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.206 1.206 12 C 0.319 3.681 13 O -0.466 6.466 14 N -0.356 5.356 15 C -0.031 4.031 16 C -0.033 4.033 17 N -0.125 5.125 18 C -0.139 4.139 19 C -0.241 4.241 20 C -0.225 4.225 21 C -0.123 4.123 22 C 0.100 3.900 23 H 0.096 0.904 24 C -0.196 4.196 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.154 0.846 33 H 0.208 0.792 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.636 7.013 -13.760 15.866 hybrid contribution 0.368 -0.753 1.070 1.359 sum 4.003 6.259 -12.690 14.705 Atomic orbital electron populations 1.21518 0.95189 0.99768 1.00901 1.18837 0.95027 0.96230 0.88771 0.93147 1.21081 1.32287 1.12366 0.91286 0.94529 1.25489 0.95009 0.95663 1.01061 1.69908 1.36610 1.23145 1.24586 0.85713 0.78703 0.78732 0.79122 1.20121 1.19525 1.20572 1.21784 0.74728 0.87287 0.84320 1.90508 1.55241 1.16833 1.84004 1.48534 1.63063 1.09432 1.14552 1.22201 0.96375 0.78826 1.05738 1.22473 0.91207 0.98658 0.90978 1.44278 1.25017 1.11536 1.31630 1.22294 0.91702 1.01392 0.98557 1.21176 1.03885 0.93870 1.05202 1.20687 0.97904 1.00814 1.03053 1.20507 1.01703 0.87393 1.02667 1.19802 0.90647 0.94198 0.85391 0.90380 1.21955 0.97662 1.02590 0.97389 0.90502 0.93662 0.96388 0.92330 0.86877 0.88181 0.90845 0.84560 0.79189 0.82783 0.83973 0.91378 0.89441 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.82 71.98 0.64 -4.72 16 2 C 0.03 1.60 1.85 -12.29 -0.02 1.57 16 3 H 0.05 2.41 6.16 -2.39 -0.01 2.39 16 4 C -0.53 -30.49 8.32 25.60 0.21 -30.28 16 5 H 0.04 2.26 7.25 -2.91 -0.02 2.24 16 6 C 0.03 1.54 5.30 84.65 0.45 1.99 16 7 N -0.90 -48.98 11.38 21.45 0.24 -48.73 16 8 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 C 0.53 24.76 6.69 87.66 0.59 25.34 16 13 O -0.59 -32.13 15.69 -3.03 -0.05 -32.18 16 14 N -0.62 -22.58 2.63 -797.06 -2.10 -24.68 16 15 C 0.09 2.48 6.04 86.35 0.52 3.00 16 16 C 0.09 2.08 7.12 86.41 0.62 2.70 16 17 N -0.45 -11.94 3.15 -508.79 -1.60 -13.54 16 18 C -0.01 -0.22 11.49 83.28 0.96 0.74 16 19 C -0.22 -5.16 10.87 22.21 0.24 -4.91 16 20 C -0.20 -5.46 10.81 22.04 0.24 -5.22 16 21 C -0.01 -0.32 5.95 40.99 0.24 -0.08 16 22 C 0.20 6.72 3.19 44.19 0.14 6.86 16 23 H 0.08 3.03 7.29 -2.39 -0.02 3.01 16 24 C -0.14 -3.62 9.42 71.98 0.68 -2.95 16 25 H 0.08 3.79 6.22 -2.39 -0.01 3.78 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 29 H 0.11 3.23 5.54 -2.39 -0.01 3.22 16 30 H 0.10 2.20 7.51 -2.38 -0.02 2.19 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.07 1.60 7.52 -2.38 -0.02 1.58 16 37 H 0.09 1.93 8.14 -2.38 -0.02 1.92 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -69.03 308.41 5.07 -63.96 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.05 Total: 14.85 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.50 Total: -5.95 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -3.45 Total: -86.95 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.03 5.07 -63.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596732355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.514 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds