Wall clock time and date at job start Mon Mar 30 2020 04:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47479 * 2 1 4 4 C 1.50701 * 109.46865 * 120.00592 * 2 1 3 5 5 H 1.08003 * 119.99885 * 120.00179 * 4 2 1 6 6 C 1.37872 * 119.99915 * 299.99455 * 4 2 1 7 7 N 1.31517 * 120.00104 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00064 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47233 * 89.99713 * 8 6 4 10 10 H 1.48499 * 109.47542 * 209.99802 * 8 6 4 11 11 H 1.48498 * 109.47453 * 330.00134 * 8 6 4 12 12 C 1.50706 * 109.46857 * 240.00311 * 2 1 3 13 13 O 1.21279 * 119.99752 * 335.50521 * 12 2 1 14 14 N 1.34780 * 119.99860 * 155.51029 * 12 2 1 15 15 C 1.47048 * 120.98367 * 355.41001 * 14 12 2 16 16 C 1.53220 * 109.29865 * 244.07234 * 15 14 12 17 17 N 1.46712 * 109.23637 * 313.69999 * 16 15 14 18 18 C 1.36092 * 126.92971 * 198.65273 * 17 16 15 19 19 C 1.34964 * 108.26351 * 180.24505 * 18 17 16 20 20 C 1.41045 * 107.46735 * 0.25927 * 19 18 17 21 21 C 1.34211 * 107.28419 * 359.53430 * 20 19 18 22 22 C 1.47475 * 120.98202 * 175.38989 * 14 12 2 23 23 H 1.09000 * 109.95624 * 17.43599 * 22 14 12 24 24 C 1.52994 * 109.95254 * 256.16560 * 22 14 12 25 25 H 1.09005 * 109.46707 * 65.18020 * 1 2 3 26 26 H 1.08998 * 109.47625 * 185.18121 * 1 2 3 27 27 H 1.08999 * 109.46989 * 305.18957 * 1 2 3 28 28 H 0.97001 * 120.00022 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.50280 * 124.12316 * 15 14 12 30 30 H 1.09008 * 109.50319 * 4.02130 * 15 14 12 31 31 H 1.09005 * 109.50906 * 193.76957 * 16 15 14 32 32 H 1.09004 * 109.54877 * 73.65422 * 16 15 14 33 33 H 1.07997 * 125.86505 * 0.49037 * 18 17 16 34 34 H 1.08005 * 126.25989 * 180.13178 * 19 18 17 35 35 H 1.08004 * 126.35733 * 179.78549 * 20 19 18 36 36 H 1.09001 * 109.47586 * 302.46619 * 24 22 14 37 37 H 1.08995 * 109.47871 * 62.47613 * 24 22 14 38 38 H 1.09006 * 109.46968 * 182.47188 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 2.1379 -0.8593 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8028 0.8726 2.6997 10 1 0.9759 1.9949 3.9069 11 1 0.8471 2.1764 1.4922 12 6 2.0323 -0.7104 -1.2306 13 8 1.3332 -1.5326 -1.7838 14 7 3.2584 -0.4320 -1.7161 15 6 4.0839 0.6307 -1.1233 16 6 4.3047 1.7378 -2.1594 17 7 4.6809 1.1319 -3.4415 18 6 5.2913 1.7490 -4.4897 19 6 5.4552 0.8432 -5.4767 20 6 4.9197 -0.3799 -5.0220 21 6 4.4614 -0.1763 -3.7771 22 6 3.8118 -1.1845 -2.8573 23 1 3.0114 -1.7056 -3.3826 24 6 4.8549 -2.1890 -2.3637 25 1 -0.3633 0.4314 -0.9328 26 1 -0.3634 -1.0234 0.0928 27 1 -0.3633 0.5922 0.8399 28 1 1.9039 -0.5277 4.4375 29 1 5.0465 0.2180 -0.8211 30 1 3.5750 1.0438 -0.2523 31 1 5.1025 2.3991 -1.8211 32 1 3.3854 2.3102 -2.2830 33 1 5.5960 2.7845 -4.5241 34 1 5.9110 1.0227 -6.4392 35 1 4.8884 -1.3089 -5.5719 36 1 5.6394 -1.6614 -1.8213 37 1 4.3784 -2.9119 -1.7016 38 1 5.2901 -2.7096 -3.2169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596732356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:16 Heat of formation + Delta-G solvation = 5.905077 kcal Electronic energy + Delta-G solvation = -20498.259829 eV Core-core repulsion = 17534.153832 eV Total energy + Delta-G solvation = -2964.105997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.55186 -40.70279 -37.31485 -35.99692 -34.65172 -33.34091 -31.92461 -29.46370 -28.82124 -27.23351 -25.57299 -24.59477 -23.28560 -21.46385 -20.42342 -19.02269 -18.87970 -18.59319 -17.77370 -17.17476 -16.43489 -16.26646 -15.59437 -15.17139 -15.00236 -14.69211 -14.55662 -14.29871 -13.93623 -13.74144 -13.54562 -13.40618 -13.09868 -12.99264 -12.79200 -12.76820 -12.71566 -12.45872 -12.23141 -12.06552 -11.49536 -11.33792 -10.80475 -10.55206 -9.86245 -9.46399 -8.92669 -8.34158 -6.43547 1.33217 1.36359 1.36687 1.49314 1.66751 1.76450 2.13745 2.26170 2.29752 3.00221 3.49835 3.57829 3.81633 3.96539 4.13445 4.19267 4.26673 4.35389 4.38467 4.50689 4.63031 4.65939 4.69025 4.73245 4.74529 4.82675 4.84427 4.94732 5.13757 5.30172 5.37536 5.40429 5.47187 5.55930 6.10609 6.14273 6.26709 6.34897 6.55035 6.59766 7.19185 7.24500 8.81606 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.006192 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.390367 B = 4520.737222 C = 4740.839962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.004 4.004 3 H 0.072 0.928 4 C -0.513 4.513 5 H 0.028 0.972 6 C 0.028 3.972 7 N -0.938 5.938 8 Si 0.946 3.054 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.231 1.231 12 C 0.539 3.461 13 O -0.589 6.589 14 N -0.615 5.615 15 C 0.091 3.909 16 C 0.091 3.909 17 N -0.449 5.449 18 C -0.007 4.007 19 C -0.217 4.217 20 C -0.198 4.198 21 C -0.010 4.010 22 C 0.205 3.795 23 H 0.088 0.912 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.270 0.730 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.193 0.807 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 9.416 -13.395 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 H 0.090 0.910 4 C -0.551 4.551 5 H 0.047 0.953 6 C -0.172 4.172 7 N -0.577 5.577 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.219 1.219 11 H -0.154 1.154 12 C 0.331 3.669 13 O -0.469 6.469 14 N -0.348 5.348 15 C -0.032 4.032 16 C -0.030 4.030 17 N -0.125 5.125 18 C -0.137 4.137 19 C -0.242 4.242 20 C -0.223 4.223 21 C -0.122 4.122 22 C 0.101 3.899 23 H 0.106 0.894 24 C -0.200 4.200 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.210 0.790 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.969 9.157 -13.148 17.473 hybrid contribution -0.528 -0.123 0.655 0.850 sum 6.441 9.034 -12.493 16.709 Atomic orbital electron populations 1.21901 0.96109 1.01129 0.99972 1.19352 0.94503 0.97719 0.90902 0.91021 1.20540 1.32429 1.12762 0.89350 0.95322 1.25752 0.96535 1.00074 0.94791 1.70012 1.46627 1.42204 0.98811 0.85882 0.78844 0.79805 0.78269 1.19978 1.21944 1.15441 1.21184 0.80045 0.81525 0.84182 1.90538 1.57623 1.37054 1.61716 1.48308 1.16340 1.36795 1.33325 1.22142 0.96813 0.87647 0.96558 1.22519 1.03640 0.95948 0.80919 1.44284 1.46028 1.08381 1.13827 1.22298 1.03533 1.00240 0.87596 1.21173 1.09061 0.92958 1.00966 1.20682 1.06968 1.00202 0.94449 1.20416 1.08743 0.85967 0.97033 1.19793 0.95165 0.90433 0.84492 0.89394 1.21975 0.97967 0.97939 1.02109 0.92510 0.93899 0.93284 0.92034 0.89962 0.86593 0.84800 0.89331 0.78993 0.82792 0.84036 0.92130 0.93741 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.04 71.98 0.58 -5.22 16 2 C 0.00 -0.16 1.41 -12.28 -0.02 -0.17 16 3 H 0.07 2.83 5.34 -2.39 -0.01 2.82 16 4 C -0.51 -27.76 9.00 25.60 0.23 -27.53 16 5 H 0.03 1.78 7.98 -2.91 -0.02 1.76 16 6 C 0.03 1.50 5.45 84.65 0.46 1.96 16 7 N -0.94 -55.51 13.96 21.45 0.30 -55.21 16 8 Si 0.95 40.79 24.32 68.60 1.67 42.45 16 9 H -0.27 -11.70 6.92 99.48 0.69 -11.01 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.23 -8.61 6.53 99.48 0.65 -7.96 16 12 C 0.54 24.06 6.76 87.66 0.59 24.65 16 13 O -0.59 -29.81 15.72 -3.02 -0.05 -29.86 16 14 N -0.62 -22.48 2.63 -797.05 -2.09 -24.58 16 15 C 0.09 2.65 6.14 86.35 0.53 3.18 16 16 C 0.09 1.97 7.12 86.41 0.62 2.58 16 17 N -0.45 -11.23 3.15 -508.78 -1.60 -12.84 16 18 C -0.01 -0.14 11.49 83.28 0.96 0.82 16 19 C -0.22 -4.86 10.87 22.20 0.24 -4.62 16 20 C -0.20 -5.21 10.81 22.04 0.24 -4.97 16 21 C -0.01 -0.28 5.96 41.00 0.24 -0.04 16 22 C 0.20 6.83 3.23 44.20 0.14 6.97 16 23 H 0.09 3.28 7.20 -2.39 -0.02 3.26 16 24 C -0.14 -4.24 9.45 71.98 0.68 -3.56 16 25 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 27 H 0.05 2.03 3.42 -2.39 -0.01 2.02 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.15 16 29 H 0.08 2.30 7.45 -2.39 -0.02 2.28 16 30 H 0.12 3.55 5.39 -2.38 -0.01 3.54 16 31 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.06 1.75 7.44 -2.39 -0.02 1.73 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -69.80 301.50 4.69 -65.10 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.98 Total: 20.86 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.49 Total: -5.94 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.40 Total: -92.62 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.05 Total: -29.86 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.67 Total: 42.45 kcal Total: -69.80 4.69 -65.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596732356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.008 kcal (2) G-P(sol) polarization free energy of solvation -69.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds