Wall clock time and date at job start Mon Mar 30 2020 04:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47435 * 2 1 4 4 C 1.46506 * 120.00119 * 275.05739 * 3 2 1 5 5 C 1.50699 * 109.47257 * 269.99790 * 4 3 2 6 6 C 1.38648 * 120.78879 * 269.71886 * 5 4 3 7 7 C 1.38208 * 119.16058 * 179.79814 * 6 5 4 8 8 N 1.31864 * 120.76490 * 0.48449 * 7 6 5 9 9 C 1.31875 * 121.72314 * 359.74670 * 8 7 6 10 10 C 1.38203 * 120.76964 * 0.02562 * 9 8 7 11 11 C 1.34775 * 119.99925 * 95.05674 * 3 2 1 12 12 O 1.21282 * 119.99772 * 183.92399 * 11 3 2 13 13 C 1.50702 * 120.00029 * 3.92177 * 11 3 2 14 14 H 1.08996 * 109.46973 * 313.37617 * 13 11 3 15 15 C 1.52996 * 109.46736 * 73.37685 * 13 11 3 16 16 C 1.50696 * 109.47134 * 193.37720 * 13 11 3 17 17 H 1.08004 * 120.00175 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00289 * 180.02562 * 16 13 11 19 19 N 1.31525 * 119.99667 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00268 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46966 * 269.99473 * 20 18 16 22 22 H 1.48495 * 109.47190 * 29.99637 * 20 18 16 23 23 H 1.48507 * 109.47126 * 150.00019 * 20 18 16 24 24 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47035 * 300.00108 * 1 2 3 26 26 H 1.09005 * 109.46886 * 59.99892 * 1 2 3 27 27 H 1.09006 * 109.47051 * 240.00354 * 2 1 3 28 28 H 1.08997 * 109.47148 * 120.00683 * 2 1 3 29 29 H 1.09004 * 109.46984 * 29.99954 * 4 3 2 30 30 H 1.09000 * 109.47022 * 149.99866 * 4 3 2 31 31 H 1.08002 * 120.42047 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.61681 * 180.25183 * 7 6 5 33 33 H 1.08003 * 119.61691 * 179.97438 * 9 8 7 34 34 H 1.07995 * 120.41955 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.47355 * 305.63422 * 15 13 11 36 36 H 1.09005 * 109.47406 * 65.63816 * 15 13 11 37 37 H 1.09002 * 109.47144 * 185.63694 * 15 13 11 38 38 H 0.96994 * 119.99803 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1571 2.1091 -1.2638 5 6 3.5390 1.8869 -1.8224 6 6 4.5818 2.7406 -1.4968 7 6 5.8367 2.5029 -2.0249 8 7 6.0451 1.4847 -2.8365 9 6 5.0761 0.6554 -3.1716 10 6 3.7964 0.8273 -2.6788 11 6 2.3400 1.9822 1.1626 12 8 2.6762 3.1474 1.1702 13 6 2.2818 1.2063 2.4533 14 1 1.3451 0.6511 2.5015 15 6 3.4576 0.2293 2.5143 16 6 2.3606 2.1605 3.6170 17 1 2.4440 3.2226 3.4398 18 6 2.3262 1.6777 4.9080 19 7 2.2242 0.3843 5.1238 20 14 2.4232 2.8606 6.3505 21 1 3.8446 3.0642 6.7289 22 1 1.8223 4.1625 5.9643 23 1 1.6797 2.2952 7.5051 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.4150 1.7467 -1.9752 30 1 2.0029 3.1738 -1.0887 31 1 4.4165 3.5787 -0.8359 32 1 6.6553 3.1609 -1.7730 33 1 5.2848 -0.1674 -3.8394 34 1 3.0070 0.1450 -2.9573 35 1 3.4577 -0.3954 1.6211 36 1 4.3921 0.7881 2.5671 37 1 3.3608 -0.4010 3.3984 38 1 2.1996 0.0447 6.0321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597042642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:23 Heat of formation + Delta-G solvation = -5.600455 kcal Electronic energy + Delta-G solvation = -20054.825156 eV Core-core repulsion = 17090.220241 eV Total energy + Delta-G solvation = -2964.604915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21467 -39.02580 -35.56517 -34.02319 -32.96133 -31.10615 -30.43306 -29.99121 -26.63362 -25.21198 -23.54663 -23.12474 -22.50375 -21.22796 -18.49764 -16.64442 -16.49190 -16.30799 -15.66170 -15.51187 -15.49950 -14.64698 -14.19647 -13.73796 -13.60649 -13.47259 -12.99972 -12.79315 -12.52173 -12.35869 -12.10899 -11.61747 -11.44163 -11.20064 -11.00715 -10.88610 -10.70265 -10.46329 -10.26968 -9.99170 -9.66113 -9.47610 -9.05251 -8.98552 -8.59412 -8.35270 -8.18176 -6.05033 -4.07586 1.22584 1.30521 3.32560 3.38403 3.43831 3.56712 3.63239 4.02760 4.45328 4.52581 4.76836 4.81070 5.15072 5.22686 5.25434 5.28781 5.35386 5.52839 5.63793 5.69317 5.80457 5.86238 5.94466 6.06975 6.08401 6.19678 6.44054 6.49484 6.62322 6.79985 6.81999 6.92755 7.04179 7.43872 7.72333 7.93789 8.03452 8.04883 8.34797 8.99639 9.15852 9.57591 11.03005 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.005801 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.370396 B = 4825.428247 C = 5336.656761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.622 5.622 4 C 0.150 3.850 5 C -0.053 4.053 6 C -0.147 4.147 7 C 0.094 3.906 8 N -0.490 5.490 9 C 0.090 3.910 10 C -0.164 4.164 11 C 0.524 3.476 12 O -0.542 6.542 13 C 0.032 3.968 14 H 0.050 0.950 15 C -0.131 4.131 16 C -0.501 4.501 17 H 0.072 0.928 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.014 0.986 36 H 0.033 0.967 37 H 0.091 0.909 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 -2.456 -14.415 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.021 4.021 3 N -0.357 5.357 4 C 0.027 3.973 5 C -0.062 4.062 6 C -0.167 4.167 7 C -0.063 4.063 8 N -0.199 5.199 9 C -0.067 4.067 10 C -0.184 4.184 11 C 0.316 3.684 12 O -0.417 6.417 13 C 0.011 3.989 14 H 0.068 0.932 15 C -0.189 4.189 16 C -0.540 4.540 17 H 0.090 0.910 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.727 3.273 21 H -0.207 1.207 22 H -0.198 1.198 23 H -0.213 1.213 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.568 -2.069 -14.562 14.719 hybrid contribution -0.805 0.538 1.110 1.473 sum -0.236 -1.532 -13.452 13.541 Atomic orbital electron populations 1.22190 0.96335 1.01830 1.02383 1.21664 0.94114 0.82909 1.03462 1.48272 1.67689 1.14337 1.05388 1.20213 0.91269 0.99406 0.86443 1.20834 0.97374 0.93855 0.94168 1.22262 0.93544 1.00999 0.99898 1.22747 0.96172 0.94432 0.92928 1.67635 1.35179 1.04069 1.13062 1.22664 0.88868 0.97392 0.97810 1.22018 0.98650 0.98570 0.99210 1.22087 0.73480 0.87583 0.85253 1.90503 1.46970 1.17527 1.86731 1.18866 0.97035 0.94788 0.88187 0.93227 1.21783 0.97722 0.98852 1.00495 1.21118 1.49736 0.93856 0.89244 0.90997 1.24937 0.95046 0.95262 0.98891 1.69880 1.50929 1.11836 1.20901 0.86465 0.78120 0.81168 0.81541 1.20659 1.19791 1.21290 0.91893 0.91703 0.93122 0.91801 0.88423 0.90177 0.88985 0.84161 0.82918 0.83122 0.85161 0.96699 0.94799 0.89073 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.46 5.54 -4.05 -0.02 1.44 16 3 N -0.62 -10.66 2.46 -175.06 -0.43 -11.09 16 4 C 0.15 2.16 5.63 -5.19 -0.03 2.13 16 5 C -0.05 -0.75 5.50 -104.32 -0.57 -1.32 16 6 C -0.15 -2.22 9.82 -39.44 -0.39 -2.61 16 7 C 0.09 1.33 11.18 -17.55 -0.20 1.13 16 8 N -0.49 -7.10 10.36 -13.25 -0.14 -7.24 16 9 C 0.09 1.11 11.18 -17.55 -0.20 0.92 16 10 C -0.16 -1.99 9.82 -39.44 -0.39 -2.38 16 11 C 0.52 11.67 6.89 -10.99 -0.08 11.60 16 12 O -0.54 -13.52 15.00 5.56 0.08 -13.44 16 13 C 0.03 0.79 1.78 -92.93 -0.17 0.62 16 14 H 0.05 1.24 7.16 -51.93 -0.37 0.87 16 15 C -0.13 -3.04 8.46 37.16 0.31 -2.73 16 16 C -0.50 -14.06 8.36 -34.44 -0.29 -14.35 16 17 H 0.07 2.13 6.84 -52.48 -0.36 1.77 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.90 -24.89 11.38 55.43 0.63 -24.26 16 20 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.98 7.96 -51.93 -0.41 0.57 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.10 1.59 4.47 -51.93 -0.23 1.36 16 29 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 30 H 0.09 1.45 7.33 -51.93 -0.38 1.07 16 31 H 0.14 2.26 7.93 -52.49 -0.42 1.84 16 32 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.01 0.29 6.13 -51.93 -0.32 -0.03 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 2.29 6.24 -51.93 -0.32 1.97 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -31.36 316.88 -7.15 -38.50 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.33 Total: 1.85 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.72 Total: -5.78 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.06 Total: -42.59 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.36 -7.15 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597042642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.904 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds