Wall clock time and date at job start Mon Mar 30 2020 04:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47435 * 2 1 4 4 C 1.46506 * 120.00119 * 275.05739 * 3 2 1 5 5 C 1.50699 * 109.47257 * 269.99790 * 4 3 2 6 6 C 1.38648 * 120.78879 * 269.71886 * 5 4 3 7 7 C 1.38208 * 119.16058 * 179.79814 * 6 5 4 8 8 N 1.31864 * 120.76490 * 0.48449 * 7 6 5 9 9 C 1.31875 * 121.72314 * 359.74670 * 8 7 6 10 10 C 1.38203 * 120.76964 * 0.02562 * 9 8 7 11 11 C 1.34775 * 119.99925 * 95.05674 * 3 2 1 12 12 O 1.21282 * 119.99772 * 183.92399 * 11 3 2 13 13 C 1.50702 * 120.00029 * 3.92177 * 11 3 2 14 14 H 1.08996 * 109.46973 * 313.37617 * 13 11 3 15 15 C 1.52996 * 109.46736 * 73.37685 * 13 11 3 16 16 C 1.50696 * 109.47134 * 193.37720 * 13 11 3 17 17 H 1.08004 * 120.00175 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00289 * 180.02562 * 16 13 11 19 19 N 1.31525 * 119.99667 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00268 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46966 * 269.99473 * 20 18 16 22 22 H 1.48495 * 109.47190 * 29.99637 * 20 18 16 23 23 H 1.48507 * 109.47126 * 150.00019 * 20 18 16 24 24 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47035 * 300.00108 * 1 2 3 26 26 H 1.09005 * 109.46886 * 59.99892 * 1 2 3 27 27 H 1.09006 * 109.47051 * 240.00354 * 2 1 3 28 28 H 1.08997 * 109.47148 * 120.00683 * 2 1 3 29 29 H 1.09004 * 109.46984 * 29.99954 * 4 3 2 30 30 H 1.09000 * 109.47022 * 149.99866 * 4 3 2 31 31 H 1.08002 * 120.42047 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.61681 * 180.25183 * 7 6 5 33 33 H 1.08003 * 119.61691 * 179.97438 * 9 8 7 34 34 H 1.07995 * 120.41955 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.47355 * 305.63422 * 15 13 11 36 36 H 1.09005 * 109.47406 * 65.63816 * 15 13 11 37 37 H 1.09002 * 109.47144 * 185.63694 * 15 13 11 38 38 H 0.96994 * 119.99803 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1571 2.1091 -1.2638 5 6 3.5390 1.8869 -1.8224 6 6 4.5818 2.7406 -1.4968 7 6 5.8367 2.5029 -2.0249 8 7 6.0451 1.4847 -2.8365 9 6 5.0761 0.6554 -3.1716 10 6 3.7964 0.8273 -2.6788 11 6 2.3400 1.9822 1.1626 12 8 2.6762 3.1474 1.1702 13 6 2.2818 1.2063 2.4533 14 1 1.3451 0.6511 2.5015 15 6 3.4576 0.2293 2.5143 16 6 2.3606 2.1605 3.6170 17 1 2.4440 3.2226 3.4398 18 6 2.3262 1.6777 4.9080 19 7 2.2242 0.3843 5.1238 20 14 2.4232 2.8606 6.3505 21 1 3.8446 3.0642 6.7289 22 1 1.8223 4.1625 5.9643 23 1 1.6797 2.2952 7.5051 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.4150 1.7467 -1.9752 30 1 2.0029 3.1738 -1.0887 31 1 4.4165 3.5787 -0.8359 32 1 6.6553 3.1609 -1.7730 33 1 5.2848 -0.1674 -3.8394 34 1 3.0070 0.1450 -2.9573 35 1 3.4577 -0.3954 1.6211 36 1 4.3921 0.7881 2.5671 37 1 3.3608 -0.4010 3.3984 38 1 2.1996 0.0447 6.0321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597042642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:23 Heat of formation + Delta-G solvation = -24.423345 kcal Electronic energy + Delta-G solvation = -20055.641378 eV Core-core repulsion = 17090.220241 eV Total energy + Delta-G solvation = -2965.421136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40344 -40.47709 -37.04182 -35.91255 -34.25452 -32.36052 -32.11530 -31.17760 -27.93451 -27.26358 -24.86195 -24.37182 -23.70253 -22.67261 -20.02101 -18.44806 -17.75772 -17.64727 -17.13854 -17.01398 -16.52504 -16.36835 -15.81690 -15.03830 -14.69620 -14.62517 -14.57091 -14.31714 -14.09931 -13.58500 -13.27504 -13.15490 -13.00233 -12.81113 -12.67717 -12.48659 -12.29414 -12.20594 -12.02023 -11.76935 -11.05521 -10.83364 -10.58050 -10.52478 -10.16974 -10.06458 -9.58498 -8.16593 -6.25979 0.21144 0.23146 1.38707 1.39919 1.51069 1.91029 2.22420 2.45337 2.95010 3.13495 3.58073 3.71659 3.74702 4.08681 4.15262 4.20001 4.25306 4.42369 4.48401 4.59819 4.65880 4.71271 4.77427 4.88880 4.91814 4.94220 5.00473 5.04602 5.10155 5.38414 5.41978 5.47331 5.68973 5.73835 5.79805 5.92066 6.17409 6.57526 6.81624 7.01684 7.38958 7.50445 8.89706 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.005801 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.370396 B = 4825.428247 C = 5336.656761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.611 5.611 4 C 0.151 3.849 5 C -0.065 4.065 6 C -0.169 4.169 7 C 0.084 3.916 8 N -0.509 5.509 9 C 0.088 3.912 10 C -0.152 4.152 11 C 0.522 3.478 12 O -0.581 6.581 13 C 0.031 3.969 14 H 0.043 0.957 15 C -0.114 4.114 16 C -0.529 4.529 17 H 0.045 0.955 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.273 1.273 24 H 0.087 0.913 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.048 0.952 36 H 0.012 0.988 37 H 0.071 0.929 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 -4.314 -16.320 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.344 5.344 4 C 0.029 3.971 5 C -0.075 4.075 6 C -0.189 4.189 7 C -0.072 4.072 8 N -0.219 5.219 9 C -0.069 4.069 10 C -0.171 4.171 11 C 0.313 3.687 12 O -0.460 6.460 13 C 0.010 3.990 14 H 0.061 0.939 15 C -0.172 4.172 16 C -0.567 4.567 17 H 0.064 0.936 18 C -0.178 4.178 19 N -0.549 5.549 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.203 1.203 23 H -0.198 1.198 24 H 0.106 0.894 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.182 0.818 33 H 0.204 0.796 34 H 0.187 0.813 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.090 0.910 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.059 -3.964 -16.497 16.966 hybrid contribution -0.629 1.055 1.617 2.030 sum -0.688 -2.909 -14.880 15.177 Atomic orbital electron populations 1.22135 0.94896 1.03306 1.01757 1.21917 0.95297 0.81089 1.04404 1.48145 1.65921 1.15404 1.04903 1.20396 0.92878 0.98243 0.85622 1.20877 0.96648 0.94753 0.95180 1.22220 0.94803 1.01299 1.00616 1.22916 0.96206 0.94954 0.93090 1.67691 1.36349 1.04484 1.13349 1.23324 0.88626 0.97466 0.97492 1.22361 0.99576 0.97754 0.97448 1.21614 0.73886 0.86928 0.86310 1.90482 1.49099 1.18961 1.87506 1.18740 0.96936 0.94470 0.88892 0.93947 1.21571 0.96149 0.98328 1.01195 1.21274 1.50839 0.93349 0.91285 0.93649 1.25564 0.94593 0.96798 1.00831 1.69949 1.50707 1.12666 1.21566 0.85637 0.78236 0.79184 0.79080 1.20279 1.20305 1.19807 0.89388 0.94999 0.91048 0.87648 0.90568 0.85807 0.91109 0.86515 0.81833 0.79640 0.81272 0.93302 0.96840 0.91024 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.09 2.44 5.54 86.38 0.48 2.92 16 3 N -0.61 -20.13 2.46 -826.15 -2.03 -22.16 16 4 C 0.15 4.05 5.63 85.63 0.48 4.53 16 5 C -0.07 -1.73 5.50 -19.67 -0.11 -1.84 16 6 C -0.17 -5.17 9.82 22.36 0.22 -4.95 16 7 C 0.08 2.37 11.18 84.68 0.95 3.32 16 8 N -0.51 -13.83 10.36 -195.84 -2.03 -15.86 16 9 C 0.09 1.86 11.18 84.68 0.95 2.81 16 10 C -0.15 -3.03 9.82 22.36 0.22 -2.81 16 11 C 0.52 23.72 6.89 87.66 0.60 24.32 16 12 O -0.58 -30.38 15.00 -3.04 -0.05 -30.43 16 13 C 0.03 1.54 1.78 -12.29 -0.02 1.52 16 14 H 0.04 2.17 7.16 -2.39 -0.02 2.15 16 15 C -0.11 -5.39 8.46 71.98 0.61 -4.79 16 16 C -0.53 -30.77 8.36 25.60 0.21 -30.56 16 17 H 0.05 2.83 6.84 -2.91 -0.02 2.81 16 18 C 0.02 1.20 5.30 84.65 0.45 1.65 16 19 N -0.91 -50.97 11.38 21.45 0.24 -50.72 16 20 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.03 0.93 7.96 -2.39 -0.02 0.91 16 26 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.11 1.89 8.11 -2.38 -0.02 1.88 16 28 H 0.08 2.32 4.47 -2.39 -0.01 2.31 16 29 H 0.12 2.24 8.03 -2.39 -0.02 2.22 16 30 H 0.07 2.23 7.33 -2.39 -0.02 2.21 16 31 H 0.12 4.06 7.93 -2.91 -0.02 4.03 16 32 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.05 1.91 6.13 -2.39 -0.01 1.89 16 36 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.07 3.65 6.24 -2.39 -0.01 3.63 16 38 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -70.87 316.88 4.99 -65.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.05 Total: 12.96 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.78 Total: -6.83 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -3.81 Total: -88.74 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.05 Total: -30.43 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.87 4.99 -65.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597042642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.462 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds