Wall clock time and date at job start Mon Mar 30 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42911 * 109.47176 * 2 1 4 4 C 1.35669 * 116.99989 * 179.97438 * 3 2 1 5 5 C 1.38920 * 119.68578 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.11274 * 179.77040 * 5 4 3 7 7 C 1.38822 * 118.48565 * 0.45491 * 6 5 4 8 8 C 1.38049 * 119.28822 * 359.52021 * 7 6 5 9 9 C 1.50706 * 119.58228 * 180.27914 * 8 7 6 10 10 N 1.46899 * 109.46964 * 95.00189 * 9 8 7 11 11 C 1.47477 * 110.99816 * 265.96787 * 10 9 8 12 12 C 1.53508 * 87.93532 * 221.29829 * 11 10 9 13 13 C 1.50702 * 114.34756 * 139.68576 * 12 11 10 14 14 H 1.08002 * 119.99536 * 266.08385 * 13 12 11 15 15 C 1.37870 * 119.99817 * 86.07411 * 13 12 11 16 16 N 1.31521 * 120.00496 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46834 * 60.00392 * 17 15 13 19 19 H 1.48502 * 109.47580 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47327 * 300.00555 * 17 15 13 21 21 C 1.47479 * 110.99726 * 170.00367 * 10 9 8 22 22 N 1.31963 * 120.83798 * 0.25915 * 8 7 6 23 23 H 1.09005 * 109.47407 * 59.99639 * 1 2 3 24 24 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47171 * 300.00081 * 1 2 3 26 26 H 1.08993 * 109.47363 * 240.00114 * 2 1 3 27 27 H 1.09000 * 109.47442 * 119.99878 * 2 1 3 28 28 H 1.08007 * 120.44032 * 0.02562 * 5 4 3 29 29 H 1.08004 * 120.75375 * 180.24643 * 6 5 4 30 30 H 1.08002 * 120.35805 * 179.80589 * 7 6 5 31 31 H 1.09000 * 109.46723 * 215.00541 * 9 8 7 32 32 H 1.09001 * 109.46776 * 335.00311 * 9 8 7 33 33 H 1.09001 * 113.48051 * 336.07004 * 11 10 9 34 34 H 1.09006 * 113.47293 * 106.53203 * 11 10 9 35 35 H 1.09004 * 114.17526 * 272.38463 * 12 11 10 36 36 H 0.96993 * 119.99946 * 179.97438 * 16 15 13 37 37 H 1.09006 * 113.47408 * 253.47136 * 21 10 9 38 38 H 1.08999 * 113.48041 * 23.86938 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8753 2.8117 0.0011 6 6 5.2489 2.9793 0.0065 7 6 6.0539 1.8483 0.0015 8 6 5.4646 0.5999 0.0014 9 6 6.3322 -0.6323 0.0023 10 7 6.5144 -1.1018 1.3823 11 6 7.7534 -0.5561 1.9670 12 6 8.0028 -1.9374 2.5884 13 6 9.4403 -2.3878 2.5451 14 1 9.7887 -3.0039 1.7293 15 6 10.3105 -2.0132 3.5466 16 7 9.8861 -1.2631 4.5402 17 14 12.0925 -2.5708 3.4926 18 1 12.7327 -2.0630 2.2526 19 1 12.8140 -2.0385 4.6764 20 1 12.1475 -4.0548 3.5060 21 6 7.1537 -2.4306 1.4084 22 7 4.1512 0.4719 0.0009 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2192 3.6697 0.0015 29 1 5.6847 3.9675 0.0111 30 1 7.1296 1.9440 0.0023 31 1 5.8534 -1.4141 -0.5873 32 1 7.3032 -0.3933 -0.4313 33 1 8.4976 -0.2742 1.2221 34 1 7.5772 0.2267 2.7049 35 1 7.5367 -2.0790 3.5635 36 1 10.4983 -0.9999 5.2449 37 1 6.4693 -3.2367 1.6728 38 1 7.7370 -2.6495 0.5140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:44 Heat of formation + Delta-G solvation = 29.357368 kcal Electronic energy + Delta-G solvation = -19122.550795 eV Core-core repulsion = 16159.461766 eV Total energy + Delta-G solvation = -2963.089030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54513 -38.96407 -37.82903 -33.16520 -32.38290 -32.11320 -30.79926 -28.54694 -25.90776 -24.80261 -23.94258 -23.12800 -22.28964 -21.16880 -18.64707 -18.17557 -16.70319 -16.41347 -16.22445 -15.85536 -14.95363 -14.64686 -14.28273 -14.13423 -13.92886 -13.62677 -13.22559 -12.81849 -12.62918 -12.33135 -12.07723 -11.87514 -11.61674 -11.51848 -11.19260 -10.97065 -10.74060 -10.65290 -10.31231 -9.91500 -9.72065 -9.37771 -9.24125 -8.96334 -8.45930 -8.28959 -8.00811 -6.06488 -4.11572 1.27575 1.43935 3.07248 3.29026 3.34493 3.36359 3.87509 4.30715 4.39192 4.83059 4.94829 4.97660 5.09093 5.19618 5.21960 5.24288 5.28752 5.39268 5.56673 5.65591 5.74249 5.75961 5.89831 5.95835 6.09329 6.12881 6.27427 6.35827 6.43983 6.57801 6.67014 6.69771 7.12598 7.14374 7.36031 7.71028 7.88879 8.02684 8.10468 8.35545 8.91675 9.53576 11.02992 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032037 B = 0.003972 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.788018 B = 7046.894942 C = 7502.805675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.312 6.312 4 C 0.320 3.680 5 C -0.203 4.203 6 C -0.041 4.041 7 C -0.203 4.203 8 C 0.196 3.804 9 C 0.064 3.936 10 N -0.475 5.475 11 C 0.003 3.997 12 C 0.042 3.958 13 C -0.518 4.518 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.003 4.003 22 N -0.526 5.526 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 6.222 -10.141 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.220 6.220 4 C 0.141 3.859 5 C -0.224 4.224 6 C -0.067 4.067 7 C -0.224 4.224 8 C 0.059 3.941 9 C -0.065 4.065 10 N -0.197 5.197 11 C -0.125 4.125 12 C 0.023 3.977 13 C -0.556 4.556 14 H 0.076 0.924 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.131 4.131 22 N -0.250 5.250 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.605 5.783 -9.678 17.669 hybrid contribution 2.114 0.398 -0.465 2.201 sum -11.491 6.181 -10.143 16.526 Atomic orbital electron populations 1.21812 0.93313 1.02760 1.03005 1.22568 0.94346 0.81217 1.02802 1.86188 1.17131 1.30605 1.88045 1.19764 0.83900 0.89958 0.92317 1.20963 0.95810 0.95559 1.10039 1.21340 0.92297 0.99271 0.93768 1.21858 1.01552 0.92737 1.06204 1.20820 0.88345 0.94618 0.90290 1.21599 0.96573 0.93656 0.94639 1.68904 1.32541 1.05771 1.12518 1.24170 0.88128 1.01902 0.98345 1.20079 0.94381 0.90004 0.93205 1.20992 0.93811 1.32539 1.08253 0.92412 1.25019 0.98724 0.94751 0.95073 1.69961 1.35482 1.35625 1.11216 0.86674 0.84817 0.79127 0.77467 1.20228 1.21251 1.20138 1.24023 0.96575 0.91626 1.00920 1.67115 1.06200 1.32903 1.18755 0.91917 0.90400 0.91754 0.91787 0.91321 0.84601 0.84346 0.84670 0.90134 0.92175 0.92693 0.91851 0.91796 0.92783 0.91841 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.15 0.38 -0.96 16 2 C 0.07 0.81 6.03 37.15 0.22 1.03 16 3 O -0.31 -4.47 10.12 -18.71 -0.19 -4.66 16 4 C 0.32 4.97 7.49 -17.12 -0.13 4.84 16 5 C -0.20 -2.70 10.04 -39.28 -0.39 -3.09 16 6 C -0.04 -0.52 10.17 -39.31 -0.40 -0.92 16 7 C -0.20 -2.99 9.71 -39.43 -0.38 -3.37 16 8 C 0.20 3.31 6.36 -82.60 -0.53 2.78 16 9 C 0.06 1.12 5.12 -4.97 -0.03 1.09 16 10 N -0.47 -9.78 6.32 -246.13 -1.55 -11.33 16 11 C 0.00 0.08 7.28 -7.57 -0.06 0.02 16 12 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16 13 C -0.52 -13.92 8.83 -34.44 -0.30 -14.22 16 14 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 15 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -25.40 13.26 55.43 0.74 -24.66 16 17 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.00 -0.06 7.24 -7.56 -0.05 -0.12 16 22 N -0.53 -9.00 9.13 -9.55 -0.09 -9.08 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 27 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 28 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 32 H 0.06 0.98 7.20 -51.93 -0.37 0.61 16 33 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 34 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.06 1.77 8.11 -51.93 -0.42 1.34 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.11 7.87 -51.93 -0.41 0.71 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -29.76 323.32 -9.12 -38.88 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.78 Total: 0.65 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.10 Total: -10.45 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.91 Total: -45.08 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.19 Total: -4.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.76 -9.12 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.238 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds