Wall clock time and date at job start Mon Mar 30 2020 05:00:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 O 1.42911 * 109.47176 * 2 1
4 4 C 1.35669 * 116.99989 * 179.97438 * 3 2 1
5 5 C 1.38920 * 119.68578 * 180.02562 * 4 3 2
6 6 C 1.38380 * 119.11274 * 179.77040 * 5 4 3
7 7 C 1.38822 * 118.48565 * 0.45491 * 6 5 4
8 8 C 1.38049 * 119.28822 * 359.52021 * 7 6 5
9 9 C 1.50706 * 119.58228 * 180.27914 * 8 7 6
10 10 N 1.46899 * 109.46964 * 95.00189 * 9 8 7
11 11 C 1.47477 * 110.99816 * 265.96787 * 10 9 8
12 12 C 1.53508 * 87.93532 * 221.29829 * 11 10 9
13 13 C 1.50702 * 114.34756 * 139.68576 * 12 11 10
14 14 H 1.08002 * 119.99536 * 266.08385 * 13 12 11
15 15 C 1.37870 * 119.99817 * 86.07411 * 13 12 11
16 16 N 1.31521 * 120.00496 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 120.00052 * 180.02562 * 15 13 12
18 18 H 1.48499 * 109.46834 * 60.00392 * 17 15 13
19 19 H 1.48502 * 109.47580 * 180.02562 * 17 15 13
20 20 H 1.48505 * 109.47327 * 300.00555 * 17 15 13
21 21 C 1.47479 * 110.99726 * 170.00367 * 10 9 8
22 22 N 1.31963 * 120.83798 * 0.25915 * 8 7 6
23 23 H 1.09005 * 109.47407 * 59.99639 * 1 2 3
24 24 H 1.09000 * 109.47337 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.47171 * 300.00081 * 1 2 3
26 26 H 1.08993 * 109.47363 * 240.00114 * 2 1 3
27 27 H 1.09000 * 109.47442 * 119.99878 * 2 1 3
28 28 H 1.08007 * 120.44032 * 0.02562 * 5 4 3
29 29 H 1.08004 * 120.75375 * 180.24643 * 6 5 4
30 30 H 1.08002 * 120.35805 * 179.80589 * 7 6 5
31 31 H 1.09000 * 109.46723 * 215.00541 * 9 8 7
32 32 H 1.09001 * 109.46776 * 335.00311 * 9 8 7
33 33 H 1.09001 * 113.48051 * 336.07004 * 11 10 9
34 34 H 1.09006 * 113.47293 * 106.53203 * 11 10 9
35 35 H 1.09004 * 114.17526 * 272.38463 * 12 11 10
36 36 H 0.96993 * 119.99946 * 179.97438 * 16 15 13
37 37 H 1.09006 * 113.47408 * 253.47136 * 21 10 9
38 38 H 1.08999 * 113.48041 * 23.86938 * 21 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.3513 1.5251 0.0005
5 6 3.8753 2.8117 0.0011
6 6 5.2489 2.9793 0.0065
7 6 6.0539 1.8483 0.0015
8 6 5.4646 0.5999 0.0014
9 6 6.3322 -0.6323 0.0023
10 7 6.5144 -1.1018 1.3823
11 6 7.7534 -0.5561 1.9670
12 6 8.0028 -1.9374 2.5884
13 6 9.4403 -2.3878 2.5451
14 1 9.7887 -3.0039 1.7293
15 6 10.3105 -2.0132 3.5466
16 7 9.8861 -1.2631 4.5402
17 14 12.0925 -2.5708 3.4926
18 1 12.7327 -2.0630 2.2526
19 1 12.8140 -2.0385 4.6764
20 1 12.1475 -4.0548 3.5060
21 6 7.1537 -2.4306 1.4084
22 7 4.1512 0.4719 0.0009
23 1 -0.3634 0.5139 -0.8900
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3634 0.5139 0.8900
26 1 1.8933 -0.5138 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 3.2192 3.6697 0.0015
29 1 5.6847 3.9675 0.0111
30 1 7.1296 1.9440 0.0023
31 1 5.8534 -1.4141 -0.5873
32 1 7.3032 -0.3933 -0.4313
33 1 8.4976 -0.2742 1.2221
34 1 7.5772 0.2267 2.7049
35 1 7.5367 -2.0790 3.5635
36 1 10.4983 -0.9999 5.2449
37 1 6.4693 -3.2367 1.6728
38 1 7.7370 -2.6495 0.5140
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597193982.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:44
Heat of formation + Delta-G solvation = 29.357368 kcal
Electronic energy + Delta-G solvation = -19122.550795 eV
Core-core repulsion = 16159.461766 eV
Total energy + Delta-G solvation = -2963.089030 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.54513 -38.96407 -37.82903 -33.16520 -32.38290 -32.11320 -30.79926 -28.54694
-25.90776 -24.80261 -23.94258 -23.12800 -22.28964 -21.16880 -18.64707 -18.17557
-16.70319 -16.41347 -16.22445 -15.85536 -14.95363 -14.64686 -14.28273 -14.13423
-13.92886 -13.62677 -13.22559 -12.81849 -12.62918 -12.33135 -12.07723 -11.87514
-11.61674 -11.51848 -11.19260 -10.97065 -10.74060 -10.65290 -10.31231 -9.91500
-9.72065 -9.37771 -9.24125 -8.96334 -8.45930 -8.28959 -8.00811 -6.06488
-4.11572 1.27575 1.43935 3.07248 3.29026 3.34493 3.36359 3.87509
4.30715 4.39192 4.83059 4.94829 4.97660 5.09093 5.19618 5.21960
5.24288 5.28752 5.39268 5.56673 5.65591 5.74249 5.75961 5.89831
5.95835 6.09329 6.12881 6.27427 6.35827 6.43983 6.57801 6.67014
6.69771 7.12598 7.14374 7.36031 7.71028 7.88879 8.02684 8.10468
8.35545 8.91675 9.53576 11.02992
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.032037 B = 0.003972 C = 0.003731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 873.788018 B = 7046.894942 C = 7502.805675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.066 3.934
3 O -0.312 6.312
4 C 0.320 3.680
5 C -0.203 4.203
6 C -0.041 4.041
7 C -0.203 4.203
8 C 0.196 3.804
9 C 0.064 3.936
10 N -0.475 5.475
11 C 0.003 3.997
12 C 0.042 3.958
13 C -0.518 4.518
14 H 0.058 0.942
15 C 0.067 3.933
16 N -0.886 5.886
17 Si 0.892 3.108
18 H -0.277 1.277
19 H -0.287 1.287
20 H -0.276 1.276
21 C -0.003 4.003
22 N -0.526 5.526
23 H 0.062 0.938
24 H 0.077 0.923
25 H 0.063 0.937
26 H 0.064 0.936
27 H 0.068 0.932
28 H 0.136 0.864
29 H 0.139 0.861
30 H 0.135 0.865
31 H 0.080 0.920
32 H 0.060 0.940
33 H 0.055 0.945
34 H 0.063 0.937
35 H 0.064 0.936
36 H 0.262 0.738
37 H 0.063 0.937
38 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.389 6.222 -10.141 17.177
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.009 4.009
3 O -0.220 6.220
4 C 0.141 3.859
5 C -0.224 4.224
6 C -0.067 4.067
7 C -0.224 4.224
8 C 0.059 3.941
9 C -0.065 4.065
10 N -0.197 5.197
11 C -0.125 4.125
12 C 0.023 3.977
13 C -0.556 4.556
14 H 0.076 0.924
15 C -0.136 4.136
16 N -0.523 5.523
17 Si 0.719 3.281
18 H -0.202 1.202
19 H -0.213 1.213
20 H -0.201 1.201
21 C -0.131 4.131
22 N -0.250 5.250
23 H 0.081 0.919
24 H 0.096 0.904
25 H 0.082 0.918
26 H 0.082 0.918
27 H 0.087 0.913
28 H 0.154 0.846
29 H 0.157 0.843
30 H 0.153 0.847
31 H 0.099 0.901
32 H 0.078 0.922
33 H 0.073 0.927
34 H 0.081 0.919
35 H 0.082 0.918
36 H 0.072 0.928
37 H 0.082 0.918
38 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -13.605 5.783 -9.678 17.669
hybrid contribution 2.114 0.398 -0.465 2.201
sum -11.491 6.181 -10.143 16.526
Atomic orbital electron populations
1.21812 0.93313 1.02760 1.03005 1.22568 0.94346 0.81217 1.02802
1.86188 1.17131 1.30605 1.88045 1.19764 0.83900 0.89958 0.92317
1.20963 0.95810 0.95559 1.10039 1.21340 0.92297 0.99271 0.93768
1.21858 1.01552 0.92737 1.06204 1.20820 0.88345 0.94618 0.90290
1.21599 0.96573 0.93656 0.94639 1.68904 1.32541 1.05771 1.12518
1.24170 0.88128 1.01902 0.98345 1.20079 0.94381 0.90004 0.93205
1.20992 0.93811 1.32539 1.08253 0.92412 1.25019 0.98724 0.94751
0.95073 1.69961 1.35482 1.35625 1.11216 0.86674 0.84817 0.79127
0.77467 1.20228 1.21251 1.20138 1.24023 0.96575 0.91626 1.00920
1.67115 1.06200 1.32903 1.18755 0.91917 0.90400 0.91754 0.91787
0.91321 0.84601 0.84346 0.84670 0.90134 0.92175 0.92693 0.91851
0.91796 0.92783 0.91841 0.92636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.35 10.28 37.15 0.38 -0.96 16
2 C 0.07 0.81 6.03 37.15 0.22 1.03 16
3 O -0.31 -4.47 10.12 -18.71 -0.19 -4.66 16
4 C 0.32 4.97 7.49 -17.12 -0.13 4.84 16
5 C -0.20 -2.70 10.04 -39.28 -0.39 -3.09 16
6 C -0.04 -0.52 10.17 -39.31 -0.40 -0.92 16
7 C -0.20 -2.99 9.71 -39.43 -0.38 -3.37 16
8 C 0.20 3.31 6.36 -82.60 -0.53 2.78 16
9 C 0.06 1.12 5.12 -4.97 -0.03 1.09 16
10 N -0.47 -9.78 6.32 -246.13 -1.55 -11.33 16
11 C 0.00 0.08 7.28 -7.57 -0.06 0.02 16
12 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16
13 C -0.52 -13.92 8.83 -34.44 -0.30 -14.22 16
14 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16
15 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16
16 N -0.89 -25.40 13.26 55.43 0.74 -24.66 16
17 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16
18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
21 C 0.00 -0.06 7.24 -7.56 -0.05 -0.12 16
22 N -0.53 -9.00 9.13 -9.55 -0.09 -9.08 16
23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16
27 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16
28 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16
29 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16
30 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16
31 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16
32 H 0.06 0.98 7.20 -51.93 -0.37 0.61 16
33 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16
34 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16
35 H 0.06 1.77 8.11 -51.93 -0.42 1.34 16
36 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16
37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
38 H 0.06 1.11 7.87 -51.93 -0.41 0.71 16
LS Contribution 323.32 15.07 4.87 4.87
Total: -1.00 -29.76 323.32 -9.12 -38.88
By element:
Atomic # 1 Polarization: 6.42 SS G_CDS: -5.78 Total: 0.65 kcal
Atomic # 6 Polarization: -8.34 SS G_CDS: -2.10 Total: -10.45 kcal
Atomic # 7 Polarization: -44.17 SS G_CDS: -0.91 Total: -45.08 kcal
Atomic # 8 Polarization: -4.47 SS G_CDS: -0.19 Total: -4.66 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -29.76 -9.12 -38.88 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597193982.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.238 kcal
(2) G-P(sol) polarization free energy of solvation -29.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds