Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42911 * 109.47176 * 2 1 4 4 C 1.35669 * 116.99989 * 179.97438 * 3 2 1 5 5 C 1.38920 * 119.68578 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.11274 * 179.77040 * 5 4 3 7 7 C 1.38822 * 118.48565 * 0.45491 * 6 5 4 8 8 C 1.38049 * 119.28822 * 359.52021 * 7 6 5 9 9 C 1.50706 * 119.58228 * 180.27914 * 8 7 6 10 10 N 1.46899 * 109.46964 * 95.00189 * 9 8 7 11 11 C 1.47477 * 110.99816 * 265.96787 * 10 9 8 12 12 C 1.53508 * 87.93532 * 221.29829 * 11 10 9 13 13 C 1.50702 * 114.34756 * 139.68576 * 12 11 10 14 14 H 1.08002 * 119.99536 * 266.08385 * 13 12 11 15 15 C 1.37870 * 119.99817 * 86.07411 * 13 12 11 16 16 N 1.31521 * 120.00496 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46834 * 60.00392 * 17 15 13 19 19 H 1.48502 * 109.47580 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47327 * 300.00555 * 17 15 13 21 21 C 1.47479 * 110.99726 * 170.00367 * 10 9 8 22 22 N 1.31963 * 120.83798 * 0.25915 * 8 7 6 23 23 H 1.09005 * 109.47407 * 59.99639 * 1 2 3 24 24 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47171 * 300.00081 * 1 2 3 26 26 H 1.08993 * 109.47363 * 240.00114 * 2 1 3 27 27 H 1.09000 * 109.47442 * 119.99878 * 2 1 3 28 28 H 1.08007 * 120.44032 * 0.02562 * 5 4 3 29 29 H 1.08004 * 120.75375 * 180.24643 * 6 5 4 30 30 H 1.08002 * 120.35805 * 179.80589 * 7 6 5 31 31 H 1.09000 * 109.46723 * 215.00541 * 9 8 7 32 32 H 1.09001 * 109.46776 * 335.00311 * 9 8 7 33 33 H 1.09001 * 113.48051 * 336.07004 * 11 10 9 34 34 H 1.09006 * 113.47293 * 106.53203 * 11 10 9 35 35 H 1.09004 * 114.17526 * 272.38463 * 12 11 10 36 36 H 0.96993 * 119.99946 * 179.97438 * 16 15 13 37 37 H 1.09006 * 113.47408 * 253.47136 * 21 10 9 38 38 H 1.08999 * 113.48041 * 23.86938 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3513 1.5251 0.0005 5 6 3.8753 2.8117 0.0011 6 6 5.2489 2.9793 0.0065 7 6 6.0539 1.8483 0.0015 8 6 5.4646 0.5999 0.0014 9 6 6.3322 -0.6323 0.0023 10 7 6.5144 -1.1018 1.3823 11 6 7.7534 -0.5561 1.9670 12 6 8.0028 -1.9374 2.5884 13 6 9.4403 -2.3878 2.5451 14 1 9.7887 -3.0039 1.7293 15 6 10.3105 -2.0132 3.5466 16 7 9.8861 -1.2631 4.5402 17 14 12.0925 -2.5708 3.4926 18 1 12.7327 -2.0630 2.2526 19 1 12.8140 -2.0385 4.6764 20 1 12.1475 -4.0548 3.5060 21 6 7.1537 -2.4306 1.4084 22 7 4.1512 0.4719 0.0009 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2192 3.6697 0.0015 29 1 5.6847 3.9675 0.0111 30 1 7.1296 1.9440 0.0023 31 1 5.8534 -1.4141 -0.5873 32 1 7.3032 -0.3933 -0.4313 33 1 8.4976 -0.2742 1.2221 34 1 7.5772 0.2267 2.7049 35 1 7.5367 -2.0790 3.5635 36 1 10.4983 -0.9999 5.2449 37 1 6.4693 -3.2367 1.6728 38 1 7.7370 -2.6495 0.5140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = 8.398021 kcal Electronic energy + Delta-G solvation = -19123.459661 eV Core-core repulsion = 16159.461766 eV Total energy + Delta-G solvation = -2963.997895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70406 -40.58809 -38.97299 -34.90029 -33.82223 -33.13828 -32.01342 -30.01941 -27.61705 -26.56073 -25.19088 -24.49307 -23.38204 -22.45654 -20.48471 -19.32035 -18.59644 -17.62599 -17.29619 -16.91516 -16.71728 -16.38130 -15.87702 -15.46963 -15.13138 -14.76806 -14.51991 -14.11837 -13.88692 -13.47600 -13.36835 -13.22311 -13.13213 -12.89549 -12.78433 -12.45139 -12.40625 -12.07778 -11.75871 -11.66893 -11.21931 -10.90910 -10.78085 -10.56298 -10.48703 -9.72289 -9.41345 -8.13792 -6.25843 0.13664 0.35380 1.45059 1.46467 1.54305 2.06381 2.43665 2.70061 3.11965 3.16841 3.43828 3.87734 4.06393 4.06856 4.10903 4.16647 4.19697 4.27343 4.39140 4.45466 4.47842 4.57516 4.68742 4.76983 4.84800 4.86471 4.94264 4.94288 5.02364 5.19530 5.22581 5.24181 5.47022 5.52743 5.63116 5.84638 6.26397 6.28539 6.35313 6.83728 6.92657 7.43047 8.95866 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032037 B = 0.003972 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.788018 B = 7046.894942 C = 7502.805675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 O -0.317 6.317 4 C 0.298 3.702 5 C -0.198 4.198 6 C -0.033 4.033 7 C -0.209 4.209 8 C 0.168 3.832 9 C 0.068 3.932 10 N -0.481 5.481 11 C 0.021 3.979 12 C 0.022 3.978 13 C -0.530 4.530 14 H 0.063 0.937 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.270 1.270 21 C 0.012 3.988 22 N -0.549 5.549 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.164 0.836 29 H 0.178 0.822 30 H 0.145 0.855 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.360 7.085 -11.572 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.012 4.012 3 O -0.225 6.225 4 C 0.119 3.881 5 C -0.218 4.218 6 C -0.058 4.058 7 C -0.230 4.230 8 C 0.032 3.968 9 C -0.060 4.060 10 N -0.203 5.203 11 C -0.109 4.109 12 C 0.003 3.997 13 C -0.569 4.569 14 H 0.081 0.919 15 C -0.184 4.184 16 N -0.561 5.561 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.116 4.116 22 N -0.274 5.274 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.182 0.818 29 H 0.196 0.804 30 H 0.163 0.837 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.587 6.635 -11.128 18.774 hybrid contribution 2.007 0.158 -0.035 2.014 sum -11.579 6.793 -11.163 17.460 Atomic orbital electron populations 1.21810 0.90553 1.04177 1.03503 1.22701 0.96471 0.80398 1.01641 1.86195 1.16680 1.31545 1.88043 1.20176 0.84239 0.90666 0.93047 1.21382 0.96640 0.95523 1.08259 1.21791 0.91844 1.00351 0.91833 1.22074 1.02378 0.92745 1.05813 1.20793 0.88421 0.95087 0.92498 1.21574 0.97536 0.94471 0.92464 1.68822 1.31178 1.05194 1.15136 1.23874 0.89256 0.99812 0.97921 1.20016 0.94243 0.92539 0.92945 1.21341 0.94758 1.32344 1.08414 0.91884 1.25843 1.03078 0.94815 0.94696 1.70100 1.36953 1.37064 1.12031 0.85601 0.79531 0.78809 0.77656 1.19130 1.21239 1.19480 1.23855 0.96025 0.92164 0.99581 1.67007 1.06569 1.34216 1.19595 0.91019 0.88535 0.91572 0.92247 0.93207 0.81832 0.80422 0.83739 0.89554 0.90977 0.92066 0.93985 0.95623 0.92863 0.91137 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.06 1.53 6.03 71.98 0.43 1.97 16 3 O -0.32 -8.86 10.12 -89.86 -0.91 -9.76 16 4 C 0.30 9.01 7.49 84.79 0.63 9.65 16 5 C -0.20 -4.79 10.04 22.47 0.23 -4.57 16 6 C -0.03 -0.74 10.17 22.44 0.23 -0.52 16 7 C -0.21 -5.83 9.71 22.36 0.22 -5.62 16 8 C 0.17 5.57 6.36 42.50 0.27 5.84 16 9 C 0.07 2.33 5.12 85.56 0.44 2.76 16 10 N -0.48 -19.83 6.32 -932.62 -5.89 -25.72 16 11 C 0.02 0.94 7.28 83.56 0.61 1.55 16 12 C 0.02 1.11 3.76 -11.20 -0.04 1.07 16 13 C -0.53 -28.65 8.83 25.60 0.23 -28.42 16 14 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 15 C 0.02 0.83 5.46 84.65 0.46 1.29 16 16 N -0.92 -54.00 13.26 21.45 0.28 -53.71 16 17 Si 0.96 42.57 29.54 68.60 2.03 44.59 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 C 0.01 0.51 7.24 83.56 0.61 1.12 16 22 N -0.55 -18.68 9.13 -296.99 -2.71 -21.39 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 27 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.09 2.80 8.08 -2.39 -0.02 2.78 16 32 H 0.07 2.26 7.20 -2.39 -0.02 2.25 16 33 H 0.06 2.70 7.38 -2.39 -0.02 2.68 16 34 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 38 H 0.07 2.72 7.87 -2.39 -0.02 2.70 16 Total: -1.00 -64.84 323.32 -1.12 -65.97 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.03 Total: 15.53 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.05 Total: -15.49 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -8.32 Total: -100.83 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.91 Total: -9.76 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.84 -1.12 -65.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.365 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds