Wall clock time and date at job start Mon Mar 30 2020 05:00:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 O 1.42911 * 109.47176 * 2 1
4 4 C 1.35669 * 116.99989 * 179.97438 * 3 2 1
5 5 C 1.38920 * 119.68578 * 180.02562 * 4 3 2
6 6 C 1.38380 * 119.11274 * 179.77040 * 5 4 3
7 7 C 1.38822 * 118.48565 * 0.45491 * 6 5 4
8 8 C 1.38049 * 119.28822 * 359.52021 * 7 6 5
9 9 C 1.50706 * 119.58228 * 180.27914 * 8 7 6
10 10 N 1.46899 * 109.46964 * 95.00189 * 9 8 7
11 11 C 1.47477 * 110.99816 * 265.96787 * 10 9 8
12 12 C 1.53508 * 87.93532 * 221.29829 * 11 10 9
13 13 C 1.50702 * 114.34756 * 139.68576 * 12 11 10
14 14 H 1.08002 * 119.99536 * 266.08385 * 13 12 11
15 15 C 1.37870 * 119.99817 * 86.07411 * 13 12 11
16 16 N 1.31521 * 120.00496 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 120.00052 * 180.02562 * 15 13 12
18 18 H 1.48499 * 109.46834 * 60.00392 * 17 15 13
19 19 H 1.48502 * 109.47580 * 180.02562 * 17 15 13
20 20 H 1.48505 * 109.47327 * 300.00555 * 17 15 13
21 21 C 1.47479 * 110.99726 * 170.00367 * 10 9 8
22 22 N 1.31963 * 120.83798 * 0.25915 * 8 7 6
23 23 H 1.09005 * 109.47407 * 59.99639 * 1 2 3
24 24 H 1.09000 * 109.47337 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.47171 * 300.00081 * 1 2 3
26 26 H 1.08993 * 109.47363 * 240.00114 * 2 1 3
27 27 H 1.09000 * 109.47442 * 119.99878 * 2 1 3
28 28 H 1.08007 * 120.44032 * 0.02562 * 5 4 3
29 29 H 1.08004 * 120.75375 * 180.24643 * 6 5 4
30 30 H 1.08002 * 120.35805 * 179.80589 * 7 6 5
31 31 H 1.09000 * 109.46723 * 215.00541 * 9 8 7
32 32 H 1.09001 * 109.46776 * 335.00311 * 9 8 7
33 33 H 1.09001 * 113.48051 * 336.07004 * 11 10 9
34 34 H 1.09006 * 113.47293 * 106.53203 * 11 10 9
35 35 H 1.09004 * 114.17526 * 272.38463 * 12 11 10
36 36 H 0.96993 * 119.99946 * 179.97438 * 16 15 13
37 37 H 1.09006 * 113.47408 * 253.47136 * 21 10 9
38 38 H 1.08999 * 113.48041 * 23.86938 * 21 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.3513 1.5251 0.0005
5 6 3.8753 2.8117 0.0011
6 6 5.2489 2.9793 0.0065
7 6 6.0539 1.8483 0.0015
8 6 5.4646 0.5999 0.0014
9 6 6.3322 -0.6323 0.0023
10 7 6.5144 -1.1018 1.3823
11 6 7.7534 -0.5561 1.9670
12 6 8.0028 -1.9374 2.5884
13 6 9.4403 -2.3878 2.5451
14 1 9.7887 -3.0039 1.7293
15 6 10.3105 -2.0132 3.5466
16 7 9.8861 -1.2631 4.5402
17 14 12.0925 -2.5708 3.4926
18 1 12.7327 -2.0630 2.2526
19 1 12.8140 -2.0385 4.6764
20 1 12.1475 -4.0548 3.5060
21 6 7.1537 -2.4306 1.4084
22 7 4.1512 0.4719 0.0009
23 1 -0.3634 0.5139 -0.8900
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3634 0.5139 0.8900
26 1 1.8933 -0.5138 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 3.2192 3.6697 0.0015
29 1 5.6847 3.9675 0.0111
30 1 7.1296 1.9440 0.0023
31 1 5.8534 -1.4141 -0.5873
32 1 7.3032 -0.3933 -0.4313
33 1 8.4976 -0.2742 1.2221
34 1 7.5772 0.2267 2.7049
35 1 7.5367 -2.0790 3.5635
36 1 10.4983 -0.9999 5.2449
37 1 6.4693 -3.2367 1.6728
38 1 7.7370 -2.6495 0.5140
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597193982.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:43
Heat of formation + Delta-G solvation = 8.398021 kcal
Electronic energy + Delta-G solvation = -19123.459661 eV
Core-core repulsion = 16159.461766 eV
Total energy + Delta-G solvation = -2963.997895 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 262.142 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.70406 -40.58809 -38.97299 -34.90029 -33.82223 -33.13828 -32.01342 -30.01941
-27.61705 -26.56073 -25.19088 -24.49307 -23.38204 -22.45654 -20.48471 -19.32035
-18.59644 -17.62599 -17.29619 -16.91516 -16.71728 -16.38130 -15.87702 -15.46963
-15.13138 -14.76806 -14.51991 -14.11837 -13.88692 -13.47600 -13.36835 -13.22311
-13.13213 -12.89549 -12.78433 -12.45139 -12.40625 -12.07778 -11.75871 -11.66893
-11.21931 -10.90910 -10.78085 -10.56298 -10.48703 -9.72289 -9.41345 -8.13792
-6.25843 0.13664 0.35380 1.45059 1.46467 1.54305 2.06381 2.43665
2.70061 3.11965 3.16841 3.43828 3.87734 4.06393 4.06856 4.10903
4.16647 4.19697 4.27343 4.39140 4.45466 4.47842 4.57516 4.68742
4.76983 4.84800 4.86471 4.94264 4.94288 5.02364 5.19530 5.22581
5.24181 5.47022 5.52743 5.63116 5.84638 6.26397 6.28539 6.35313
6.83728 6.92657 7.43047 8.95866
Molecular weight = 262.14amu
Principal moments of inertia in cm(-1)
A = 0.032037 B = 0.003972 C = 0.003731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 873.788018 B = 7046.894942 C = 7502.805675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.063 3.937
3 O -0.317 6.317
4 C 0.298 3.702
5 C -0.198 4.198
6 C -0.033 4.033
7 C -0.209 4.209
8 C 0.168 3.832
9 C 0.068 3.932
10 N -0.481 5.481
11 C 0.021 3.979
12 C 0.022 3.978
13 C -0.530 4.530
14 H 0.063 0.937
15 C 0.015 3.985
16 N -0.923 5.923
17 Si 0.959 3.041
18 H -0.266 1.266
19 H -0.287 1.287
20 H -0.270 1.270
21 C 0.012 3.988
22 N -0.549 5.549
23 H 0.071 0.929
24 H 0.096 0.904
25 H 0.065 0.935
26 H 0.059 0.941
27 H 0.049 0.951
28 H 0.164 0.836
29 H 0.178 0.822
30 H 0.145 0.855
31 H 0.086 0.914
32 H 0.072 0.928
33 H 0.061 0.939
34 H 0.042 0.958
35 H 0.026 0.974
36 H 0.263 0.737
37 H 0.070 0.930
38 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.360 7.085 -11.572 18.354
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.012 4.012
3 O -0.225 6.225
4 C 0.119 3.881
5 C -0.218 4.218
6 C -0.058 4.058
7 C -0.230 4.230
8 C 0.032 3.968
9 C -0.060 4.060
10 N -0.203 5.203
11 C -0.109 4.109
12 C 0.003 3.997
13 C -0.569 4.569
14 H 0.081 0.919
15 C -0.184 4.184
16 N -0.561 5.561
17 Si 0.784 3.216
18 H -0.191 1.191
19 H -0.212 1.212
20 H -0.195 1.195
21 C -0.116 4.116
22 N -0.274 5.274
23 H 0.090 0.910
24 H 0.115 0.885
25 H 0.084 0.916
26 H 0.078 0.922
27 H 0.068 0.932
28 H 0.182 0.818
29 H 0.196 0.804
30 H 0.163 0.837
31 H 0.104 0.896
32 H 0.090 0.910
33 H 0.079 0.921
34 H 0.060 0.940
35 H 0.044 0.956
36 H 0.071 0.929
37 H 0.089 0.911
38 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -13.587 6.635 -11.128 18.774
hybrid contribution 2.007 0.158 -0.035 2.014
sum -11.579 6.793 -11.163 17.460
Atomic orbital electron populations
1.21810 0.90553 1.04177 1.03503 1.22701 0.96471 0.80398 1.01641
1.86195 1.16680 1.31545 1.88043 1.20176 0.84239 0.90666 0.93047
1.21382 0.96640 0.95523 1.08259 1.21791 0.91844 1.00351 0.91833
1.22074 1.02378 0.92745 1.05813 1.20793 0.88421 0.95087 0.92498
1.21574 0.97536 0.94471 0.92464 1.68822 1.31178 1.05194 1.15136
1.23874 0.89256 0.99812 0.97921 1.20016 0.94243 0.92539 0.92945
1.21341 0.94758 1.32344 1.08414 0.91884 1.25843 1.03078 0.94815
0.94696 1.70100 1.36953 1.37064 1.12031 0.85601 0.79531 0.78809
0.77656 1.19130 1.21239 1.19480 1.23855 0.96025 0.92164 0.99581
1.67007 1.06569 1.34216 1.19595 0.91019 0.88535 0.91572 0.92247
0.93207 0.81832 0.80422 0.83739 0.89554 0.90977 0.92066 0.93985
0.95623 0.92863 0.91137 0.91184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.35 10.28 71.98 0.74 -1.61 16
2 C 0.06 1.53 6.03 71.98 0.43 1.97 16
3 O -0.32 -8.86 10.12 -89.86 -0.91 -9.76 16
4 C 0.30 9.01 7.49 84.79 0.63 9.65 16
5 C -0.20 -4.79 10.04 22.47 0.23 -4.57 16
6 C -0.03 -0.74 10.17 22.44 0.23 -0.52 16
7 C -0.21 -5.83 9.71 22.36 0.22 -5.62 16
8 C 0.17 5.57 6.36 42.50 0.27 5.84 16
9 C 0.07 2.33 5.12 85.56 0.44 2.76 16
10 N -0.48 -19.83 6.32 -932.62 -5.89 -25.72 16
11 C 0.02 0.94 7.28 83.56 0.61 1.55 16
12 C 0.02 1.11 3.76 -11.20 -0.04 1.07 16
13 C -0.53 -28.65 8.83 25.60 0.23 -28.42 16
14 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16
15 C 0.02 0.83 5.46 84.65 0.46 1.29 16
16 N -0.92 -54.00 13.26 21.45 0.28 -53.71 16
17 Si 0.96 42.57 29.54 68.60 2.03 44.59 16
18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16
19 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16
20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
21 C 0.01 0.51 7.24 83.56 0.61 1.12 16
22 N -0.55 -18.68 9.13 -296.99 -2.71 -21.39 16
23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16
24 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16
26 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16
27 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16
28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16
29 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16
30 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16
31 H 0.09 2.80 8.08 -2.39 -0.02 2.78 16
32 H 0.07 2.26 7.20 -2.39 -0.02 2.25 16
33 H 0.06 2.70 7.38 -2.39 -0.02 2.68 16
34 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16
35 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16
36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16
37 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16
38 H 0.07 2.72 7.87 -2.39 -0.02 2.70 16
Total: -1.00 -64.84 323.32 -1.12 -65.97
By element:
Atomic # 1 Polarization: 14.50 SS G_CDS: 1.03 Total: 15.53 kcal
Atomic # 6 Polarization: -20.54 SS G_CDS: 5.05 Total: -15.49 kcal
Atomic # 7 Polarization: -92.51 SS G_CDS: -8.32 Total: -100.83 kcal
Atomic # 8 Polarization: -8.86 SS G_CDS: -0.91 Total: -9.76 kcal
Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal
Total: -64.84 -1.12 -65.97 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597193982.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.365 kcal
(2) G-P(sol) polarization free energy of solvation -64.845 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.520 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds